RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 AP1S3Q96PC3 154 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 RNF5Q99942 180 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 GABARAPL1Q9H0R8 117 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 XAGE1AQ9HD64 81 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 EPDR1Q9UM22 224 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 SNX12Q9UMY4 172 aa1.86□□□□□ -2.11
VPS35-209ENST00000568642 FAT1Q14517 4588 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 TRBV24-1A0A075B6N3 115 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 A0A096LNJ9 63 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 A0A0G2JMM0 328 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 LOC107986453A0A1B0GWG9 222 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 A0A1W2PP18 115 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 A0A1W2PPB8 328 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 A6NED7 52 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 OR2T8A6NH00 312 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 C17orf51A8MQB3 221 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 KIR3DP1A8MWS1 328 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 A8MWV9 139 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 C16orf90A8MZG2 172 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 H3BQF6 201 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 UQCRQO14949 82 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 SLC25A20O43772 301 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 MRPS14O60783 128 aaKnown RBP1.85□□□□□ -2.11
VPS35-209ENST00000568642 HIST1H2BKO60814 126 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 GAS8-AS1O95177 125 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 HIST1H2BJP06899 126 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 CTSDP07339 412 aaPredicted RBP1.85□□□□□ -2.11
VPS35-209ENST00000568642 TRGC1P0CF51 173 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 DNAH10OSP0CZ25 163 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 RPL27AP46776 148 aaKnown RBP1.85□□□□□ -2.11
VPS35-209ENST00000568642 TMEM258P61165 79 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 SS18Q15532 418 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 SPANXN3Q5MJ09 141 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 COL5A1-AS1Q5SY13 56 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 IZUMO2Q6UXV1 221 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 MIR17HGQ75NE6 70 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 CROCCP2Q86T23 111 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 Q8IYB0 196 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 C10orf111Q8N326 155 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 SIGLECL1Q8N7X8 197 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 RHOXF1Q8NHV9 184 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 SLC35B3Q9H1N7 401 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 LINC00312Q9Y6C7 94 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 ARHGAP32A7KAX9 2087 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 HEATR5BQ9P2D3 2071 aa1.85□□□□□ -2.11
VPS35-209ENST00000568642 TRAV12-2A0A075B6T6 113 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 NDUFAF8A1L188 74 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 OOSP1A8MZH6 123 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 J3QR89 54 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 SYNGR2O43760 224 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 IGHV1-69P01742 117 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 HBDP02042 147 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 IGKV2-30P06310 120 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 P0C880 135 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 YPEL3P61236 119 aaPredicted RBP1.84□□□□□ -2.11
VPS35-209ENST00000568642 DYNLT1P63172 113 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 HES1Q14469 280 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 Q6AWC8 147 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 GTSCR1Q86UQ5 136 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 OR10P1Q8NGE3 313 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 MRPS24Q96EL2 167 aaKnown RBP1.84□□□□□ -2.11
VPS35-209ENST00000568642 PRELID3AQ96N28 172 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 CIB3Q96Q77 187 aaPredicted RBP1.84□□□□□ -2.11
VPS35-209ENST00000568642 HIST1H2BLQ99880 126 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 MIEN1Q9BRT3 115 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 AGPAT4-IT1Q9H0P7 198 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 SLC39A9Q9NUM3 307 aa1.84□□□□□ -2.11
VPS35-209ENST00000568642 TRBV20-1A0A075B6N2 111 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 K7ERS5 55 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 NDUFB3O43676 98 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 SNAPC5O75971 98 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 PYYP10082 97 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 DEFA4P12838 97 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 HIST1H1DP16402 221 aaKnown RBP1.83□□□□□ -2.12
VPS35-209ENST00000568642 EIF5AP63241 154 aaKnown RBP1.83□□□□□ -2.12
VPS35-209ENST00000568642 IGLV3-21P80748 117 aaPredicted RBP1.83□□□□□ -2.12
VPS35-209ENST00000568642 DCDP81605 110 aaKnown RBP1.83□□□□□ -2.12
VPS35-209ENST00000568642 MIAQ16674 131 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 ZNF322Q6U7Q0 402 aaPredicted RBP1.83□□□□□ -2.12
VPS35-209ENST00000568642 Q6ZUT4 128 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 ZNF767PQ75MW2 155 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 BPIFA4PQ86YQ2 179 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 HIST3H2BBQ8N257 126 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 TTC9CQ8N5M4 171 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 LINC00612Q8N6U2 182 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 Q8NAQ8 132 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 OTOSQ8NHW6 89 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 LINC00526Q96FQ7 95 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 NPCDR1Q9BY65 106 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 PRO1933Q9H354 126 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 SMDT1Q9H4I9 107 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 OSTCQ9NRP0 149 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 FKBP11Q9NYL4 201 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 RPL26L1Q9UNX3 145 aaKnown RBP1.83□□□□□ -2.12
VPS35-209ENST00000568642 ICOSQ9Y6W8 199 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 HSPE1-MOB4S4R3N1 261 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 SORL1Q92673 2214 aa1.83□□□□□ -2.12
VPS35-209ENST00000568642 PKD1P98161 4303 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 SYNE2Q8WXH0 6885 aaKnown RBP1.82□□□□□ -2.12
VPS35-209ENST00000568642 DNAH6Q9C0G6 4158 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms