RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 NTN5Q8WTR8 489 aaPredicted RBP12.51□□□□□ -0.41
CLN3-227ENST00000567495 RMI2Q96E14 147 aa12.51□□□□□ -0.41
CLN3-227ENST00000567495 NUDT11Q96G61 164 aa12.51□□□□□ -0.41
CLN3-227ENST00000567495 DAZ3Q9NR90 486 aaKnown RBP12.51□□□□□ -0.41
CLN3-227ENST00000567495 TRBV6-8A0A0A6YYG3 113 aa12.5□□□□□ -0.41
CLN3-227ENST00000567495 LRCOL1A6NCL2 159 aa12.5□□□□□ -0.41
CLN3-227ENST00000567495 PKIAP61925 76 aa12.5□□□□□ -0.41
CLN3-227ENST00000567495 Q8N3U1 123 aa12.5□□□□□ -0.41
CLN3-227ENST00000567495 OCC1Q8TAD7 63 aa12.5□□□□□ -0.41
CLN3-227ENST00000567495 RPP21Q9H633 154 aaKnown RBP12.5□□□□□ -0.41
CLN3-227ENST00000567495 CTRLP40313 264 aa12.49□□□□□ -0.41
CLN3-227ENST00000567495 NKX2-5P52952 324 aaPredicted RBP12.49□□□□□ -0.41
CLN3-227ENST00000567495 LYZL1Q6UWQ5 148 aa12.49□□□□□ -0.41
CLN3-227ENST00000567495 DNAJC30Q96LL9 226 aa12.49□□□□□ -0.41
CLN3-227ENST00000567495 A0A1B0GVG6 124 aa12.48□□□□□ -0.41
CLN3-227ENST00000567495 CNFNQ9BYD5 112 aa12.48□□□□□ -0.41
CLN3-227ENST00000567495 K7EN84 100 aa12.47□□□□□ -0.41
CLN3-227ENST00000567495 M0QY20 66 aa12.47□□□□□ -0.41
CLN3-227ENST00000567495 MGPP08493 103 aa12.47□□□□□ -0.41
CLN3-227ENST00000567495 NTF3P20783 257 aa12.47□□□□□ -0.41
CLN3-227ENST00000567495 EIF5A2Q9GZV4 153 aaKnown RBP12.47□□□□□ -0.41
CLN3-227ENST00000567495 DNAH5Q8TE73 4624 aa12.46□□□□□ -0.41
CLN3-227ENST00000567495 TMEM262E9PQX1 116 aa12.46□□□□□ -0.41
CLN3-227ENST00000567495 Q0VG73 95 aa12.46□□□□□ -0.41
CLN3-227ENST00000567495 Q8N814 137 aa12.46□□□□□ -0.41
CLN3-227ENST00000567495 MAPKAPK5-AS1Q8N8E1 139 aa12.46□□□□□ -0.41
CLN3-227ENST00000567495 RNASE7Q9H1E1 156 aaKnown RBP12.46□□□□□ -0.41
CLN3-227ENST00000567495 DPH3P1Q9H4G8 78 aa12.46□□□□□ -0.41
CLN3-227ENST00000567495 KLK12Q9UKR0 248 aa12.46□□□□□ -0.41
CLN3-227ENST00000567495 IGLV5-52A0A0A0MRZ9 124 aa12.45□□□□□ -0.42
CLN3-227ENST00000567495 GCSHP23434 173 aa12.45□□□□□ -0.42
CLN3-227ENST00000567495 FAM231DQ6ZW35 169 aa12.45□□□□□ -0.42
CLN3-227ENST00000567495 HSPG2P98160 4391 aa12.44□□□□□ -0.42
CLN3-227ENST00000567495 FUSP35637 526 aaKnown RBP eCLIP12.44□□□□□ -0.42
CLN3-227ENST00000567495 TWIST1Q15672 202 aa12.44□□□□□ -0.42
CLN3-227ENST00000567495 SUMO4Q6EEV6 95 aa12.44□□□□□ -0.42
CLN3-227ENST00000567495 RASL11AQ6T310 242 aa12.44□□□□□ -0.42
CLN3-227ENST00000567495 UBE2WQ96B02 151 aa12.44□□□□□ -0.42
CLN3-227ENST00000567495 FAM210AQ96ND0 272 aa12.44□□□□□ -0.42
CLN3-227ENST00000567495 CHCHD5Q9BSY4 110 aa12.44□□□□□ -0.42
CLN3-227ENST00000567495 A8MWL6 223 aa12.43□□□□□ -0.42
CLN3-227ENST00000567495 CEBPGP53567 150 aa12.43□□□□□ -0.42
CLN3-227ENST00000567495 Q8N1X5 172 aa12.43□□□□□ -0.42
CLN3-227ENST00000567495 FRZBQ92765 325 aa12.43□□□□□ -0.42
CLN3-227ENST00000567495 TRBV25-1A0A075B6N4 114 aa12.42□□□□□ -0.42
CLN3-227ENST00000567495 GATCO43716 136 aaKnown RBP12.42□□□□□ -0.42
CLN3-227ENST00000567495 CT83Q5H943 113 aa12.42□□□□□ -0.42
CLN3-227ENST00000567495 ATRAIDQ6UW56 229 aa12.42□□□□□ -0.42
CLN3-227ENST00000567495 SMIM15Q7Z3B0 74 aa12.42□□□□□ -0.42
CLN3-227ENST00000567495 SMIM7Q9BQ49 75 aa12.42□□□□□ -0.42
CLN3-227ENST00000567495 KRTAP17-1Q9BYP8 105 aa12.42□□□□□ -0.42
CLN3-227ENST00000567495 IGKV2D-24A0A075B6R9 120 aa12.41□□□□□ -0.42
CLN3-227ENST00000567495 KRTAP10-1P60331 282 aa12.41□□□□□ -0.42
CLN3-227ENST00000567495 IQCJQ1A5X6 159 aa12.41□□□□□ -0.42
CLN3-227ENST00000567495 NTM-AS1Q6ZSK4 140 aa12.41□□□□□ -0.42
CLN3-227ENST00000567495 NIT2Q9NQR4 276 aa12.41□□□□□ -0.42
CLN3-227ENST00000567495 IGHV1-24A0A0C4DH33 117 aa12.4□□□□□ -0.42
CLN3-227ENST00000567495 CRPP02741 224 aa12.4□□□□□ -0.42
CLN3-227ENST00000567495 GTSF1Q8WW33 167 aa12.4□□□□□ -0.42
CLN3-227ENST00000567495 APOBP04114 4563 aaKnown RBP12.39□□□□□ -0.43
CLN3-227ENST00000567495 ZNF727A8MUV8 499 aa12.39□□□□□ -0.43
CLN3-227ENST00000567495 FOXA3P55318 350 aaPredicted RBP12.39□□□□□ -0.43
CLN3-227ENST00000567495 MPV17L2Q567V2 206 aa12.39□□□□□ -0.43
CLN3-227ENST00000567495 TEX261Q6UWH6 196 aa12.39□□□□□ -0.43
CLN3-227ENST00000567495 LINC01551Q86U37 167 aa12.39□□□□□ -0.43
CLN3-227ENST00000567495 C15orf54Q8N8G6 183 aa12.39□□□□□ -0.43
CLN3-227ENST00000567495 Q8N976 141 aa12.39□□□□□ -0.43
CLN3-227ENST00000567495 ANGP03950 147 aaKnown RBP12.38□□□□□ -0.43
CLN3-227ENST00000567495 SRP19P09132 144 aaKnown RBP12.38□□□□□ -0.43
CLN3-227ENST00000567495 PGLYRP4Q96LB8 373 aa12.38□□□□□ -0.43
CLN3-227ENST00000567495 TMEM70Q9BUB7 260 aa12.38□□□□□ -0.43
CLN3-227ENST00000567495 C1orf43Q9BWL3 253 aa12.38□□□□□ -0.43
CLN3-227ENST00000567495 PCLOQ9Y6V0 5065 aa12.38□□□□□ -0.43
CLN3-227ENST00000567495 MIAQ16674 131 aa12.37□□□□□ -0.43
CLN3-227ENST00000567495 FAM74A3Q4VXF1 159 aa12.37□□□□□ -0.43
CLN3-227ENST00000567495 BAALCQ8WXS3 180 aa12.37□□□□□ -0.43
CLN3-227ENST00000567495 BORCS7Q96B45 105 aa12.37□□□□□ -0.43
CLN3-227ENST00000567495 KRTAP4-5Q9BYR2 181 aa12.37□□□□□ -0.43
CLN3-227ENST00000567495 GFRA4Q9GZZ7 299 aa12.37□□□□□ -0.43
CLN3-227ENST00000567495 OSTCQ9NRP0 149 aa12.37□□□□□ -0.43
CLN3-227ENST00000567495 FAM231BA6NCW3 169 aa12.36□□□□□ -0.43
CLN3-227ENST00000567495 XGP55808 180 aa12.36□□□□□ -0.43
CLN3-227ENST00000567495 RBX1P62877 108 aa12.36□□□□□ -0.43
CLN3-227ENST00000567495 GAGE6Q13070 117 aa12.36□□□□□ -0.43
CLN3-227ENST00000567495 WFDC2Q14508 124 aa12.36□□□□□ -0.43
CLN3-227ENST00000567495 ENHOQ6UWT2 76 aa12.36□□□□□ -0.43
CLN3-227ENST00000567495 TMEM243Q9BU79 118 aa12.36□□□□□ -0.43
CLN3-227ENST00000567495 LECT2O14960 151 aa12.35□□□□□ -0.43
CLN3-227ENST00000567495 COTL1Q14019 142 aa12.35□□□□□ -0.43
CLN3-227ENST00000567495 TSKUQ8WUA8 353 aa12.35□□□□□ -0.43
CLN3-227ENST00000567495 SMDT1Q9H4I9 107 aa12.35□□□□□ -0.43
CLN3-227ENST00000567495 PRR34Q9NV39 138 aa12.35□□□□□ -0.43
CLN3-227ENST00000567495 TMEM241Q24JQ0 296 aa12.34□□□□□ -0.43
CLN3-227ENST00000567495 C14orf177Q52M58 125 aa12.34□□□□□ -0.43
CLN3-227ENST00000567495 GATD1Q8NB37 220 aa12.34□□□□□ -0.43
CLN3-227ENST00000567495 A0A1B0GUV1 79 aa12.33□□□□□ -0.44
CLN3-227ENST00000567495 PEA15Q15121 130 aa12.33□□□□□ -0.44
CLN3-227ENST00000567495 A0A1B0GUT8 65 aa12.32□□□□□ -0.44
CLN3-227ENST00000567495 HIGD1CA8MV81 97 aa12.32□□□□□ -0.44
CLN3-227ENST00000567495 EPM2AB3EWF7 344 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms