RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 LINC00528Q8N1L1 170 aa9.79□□□□□ -0.84
CLN3-222ENST00000566083 NEXN-AS1Q8NBZ9 246 aa9.79□□□□□ -0.84
CLN3-222ENST00000566083 DEFB104AQ8WTQ1 72 aa9.79□□□□□ -0.84
CLN3-222ENST00000566083 MANBALQ9NQG1 85 aa9.79□□□□□ -0.84
CLN3-222ENST00000566083 J3QL48 77 aa9.78□□□□□ -0.84
CLN3-222ENST00000566083 RAB5CP51148 216 aa9.78□□□□□ -0.84
CLN3-222ENST00000566083 RPL19P84098 196 aaKnown RBP9.78□□□□□ -0.84
CLN3-222ENST00000566083 MIAQ16674 131 aa9.78□□□□□ -0.84
CLN3-222ENST00000566083 EIF5AL1Q6IS14 154 aaKnown RBP9.78□□□□□ -0.84
CLN3-222ENST00000566083 AP1S3Q96PC3 154 aa9.78□□□□□ -0.84
CLN3-222ENST00000566083 CHCHD5Q9BSY4 110 aa9.78□□□□□ -0.84
CLN3-222ENST00000566083 VAX2Q9UIW0 290 aa9.78□□□□□ -0.84
CLN3-222ENST00000566083 A0A1B0GV50 99 aa9.77□□□□□ -0.85
CLN3-222ENST00000566083 H7C1H1 209 aa9.77□□□□□ -0.85
CLN3-222ENST00000566083 ANGP03950 147 aaKnown RBP9.77□□□□□ -0.85
CLN3-222ENST00000566083 RPS20P60866 119 aaKnown RBP9.77□□□□□ -0.85
CLN3-222ENST00000566083 SMIM12Q96EX1 92 aa9.77□□□□□ -0.85
CLN3-222ENST00000566083 CHAC1Q9BUX1 264 aa9.77□□□□□ -0.85
CLN3-222ENST00000566083 TRAV1-1A0A0B4J248 108 aa9.76□□□□□ -0.85
CLN3-222ENST00000566083 RPL35P42766 123 aaKnown RBP9.76□□□□□ -0.85
CLN3-222ENST00000566083 C15orf54Q8N8G6 183 aa9.76□□□□□ -0.85
CLN3-222ENST00000566083 DAZAP1Q96EP5 407 aaKnown RBP9.76□□□□□ -0.85
CLN3-222ENST00000566083 TRBV25-1A0A075B6N4 114 aa9.75□□□□□ -0.85
CLN3-222ENST00000566083 XKRY2A2RUG3 117 aa9.75□□□□□ -0.85
CLN3-222ENST00000566083 MPV17L2Q567V2 206 aa9.75□□□□□ -0.85
CLN3-222ENST00000566083 ENHOQ6UWT2 76 aa9.75□□□□□ -0.85
CLN3-222ENST00000566083 SCXQ7RTU7 201 aa9.75□□□□□ -0.85
CLN3-222ENST00000566083 C9orf62Q8N4C0 152 aa9.75□□□□□ -0.85
CLN3-222ENST00000566083 C11orf52Q96A22 123 aa9.75□□□□□ -0.85
CLN3-222ENST00000566083 DNAJC30Q96LL9 226 aa9.75□□□□□ -0.85
CLN3-222ENST00000566083 BIN3Q9NQY0 253 aa9.75□□□□□ -0.85
CLN3-222ENST00000566083 CACNG7P62955 275 aa9.74□□□□□ -0.85
CLN3-222ENST00000566083 MYCBP2O75592 4640 aa9.74□□□□□ -0.85
CLN3-222ENST00000566083 DGAT2L7PQ6IED9 249 aa9.73□□□□□ -0.85
CLN3-222ENST00000566083 FER1L6-AS1Q8NA97 138 aa9.73□□□□□ -0.85
CLN3-222ENST00000566083 DERL1Q9BUN8 251 aa9.73□□□□□ -0.85
CLN3-222ENST00000566083 GNG13Q9P2W3 67 aa9.73□□□□□ -0.85
CLN3-222ENST00000566083 KIF25-AS1Q9Y6Z4 181 aa9.73□□□□□ -0.85
CLN3-222ENST00000566083 KRTAP29-1A8MX34 341 aaPredicted RBP9.73□□□□□ -0.85
CLN3-222ENST00000566083 F2Z2F3 143 aa9.73□□□□□ -0.85
CLN3-222ENST00000566083 LINC01620Q4KN68 170 aa9.73□□□□□ -0.85
CLN3-222ENST00000566083 PRR34Q9NV39 138 aa9.73□□□□□ -0.85
CLN3-222ENST00000566083 DNAH8Q96JB1 4490 aa9.73□□□□□ -0.85
CLN3-222ENST00000566083 IGHV1-24A0A0C4DH33 117 aa9.72□□□□□ -0.85
CLN3-222ENST00000566083 MUC21A0A0G2JKD1 596 aa9.72□□□□□ -0.85
CLN3-222ENST00000566083 MUC21A0A140T8X8 626 aa9.72□□□□□ -0.85
CLN3-222ENST00000566083 PDE6DO43924 150 aa9.72□□□□□ -0.85
CLN3-222ENST00000566083 IFNA1P01562 189 aa9.72□□□□□ -0.85
CLN3-222ENST00000566083 IGLV2-8P01709 118 aa9.72□□□□□ -0.85
CLN3-222ENST00000566083 CCL20P78556 96 aa9.72□□□□□ -0.85
CLN3-222ENST00000566083 IQCJQ1A5X6 159 aa9.72□□□□□ -0.85
CLN3-222ENST00000566083 CENPWQ5EE01 88 aa9.72□□□□□ -0.85
CLN3-222ENST00000566083 OR2D3Q8NGH3 330 aa9.72□□□□□ -0.85
CLN3-222ENST00000566083 USP17L23D6RBM5 183 aa9.71□□□□□ -0.86
CLN3-222ENST00000566083 HLA-DQA1P01909 254 aa9.71□□□□□ -0.86
CLN3-222ENST00000566083 TRGC1P0CF51 173 aa9.71□□□□□ -0.86
CLN3-222ENST00000566083 IGLC6P0CF74 106 aa9.71□□□□□ -0.86
CLN3-222ENST00000566083 GNG4P50150 75 aa9.71□□□□□ -0.86
CLN3-222ENST00000566083 SSTP61278 116 aa9.71□□□□□ -0.86
CLN3-222ENST00000566083 RBX1P62877 108 aa9.71□□□□□ -0.86
CLN3-222ENST00000566083 CLRN3Q8NCR9 226 aa9.71□□□□□ -0.86
CLN3-222ENST00000566083 CIRBP-AS1Q8TBR5 109 aa9.71□□□□□ -0.86
CLN3-222ENST00000566083 TPPP3Q9BW30 176 aa9.71□□□□□ -0.86
CLN3-222ENST00000566083 M0QY20 66 aa9.7□□□□□ -0.86
CLN3-222ENST00000566083 P01737 135 aa9.7□□□□□ -0.86
CLN3-222ENST00000566083 TAGLN2P37802 199 aaKnown RBP9.7□□□□□ -0.86
CLN3-222ENST00000566083 MEF2BQ02080 365 aaPredicted RBP9.7□□□□□ -0.86
CLN3-222ENST00000566083 NTM-AS1Q6ZSK4 140 aa9.7□□□□□ -0.86
CLN3-222ENST00000566083 TRAV8-4A0A0B4J246 113 aa9.69□□□□□ -0.86
CLN3-222ENST00000566083 C19orf71A6NCJ1 209 aa9.69□□□□□ -0.86
CLN3-222ENST00000566083 MGPP08493 103 aa9.69□□□□□ -0.86
CLN3-222ENST00000566083 LINC00269Q8N2A0 174 aa9.69□□□□□ -0.86
CLN3-222ENST00000566083 A0A1B0GUV1 79 aa9.68□□□□□ -0.86
CLN3-222ENST00000566083 SULT1A2P50226 295 aa9.68□□□□□ -0.86
CLN3-222ENST00000566083 GAGE6Q13070 117 aa9.68□□□□□ -0.86
CLN3-222ENST00000566083 WDR73Q6P4I2 378 aa9.68□□□□□ -0.86
CLN3-222ENST00000566083 RASL11AQ6T310 242 aa9.68□□□□□ -0.86
CLN3-222ENST00000566083 GZMBP10144 247 aa9.67□□□□□ -0.86
CLN3-222ENST00000566083 REG3AQ06141 175 aa9.67□□□□□ -0.86
CLN3-222ENST00000566083 C9orf163Q8N9P6 203 aa9.67□□□□□ -0.86
CLN3-222ENST00000566083 PGLYRP4Q96LB8 373 aa9.67□□□□□ -0.86
CLN3-222ENST00000566083 TMEM243Q9BU79 118 aa9.67□□□□□ -0.86
CLN3-222ENST00000566083 DPH3P1Q9H4G8 78 aa9.67□□□□□ -0.86
CLN3-222ENST00000566083 NIT2Q9NQR4 276 aa9.67□□□□□ -0.86
CLN3-222ENST00000566083 MED9Q9NWA0 146 aa9.67□□□□□ -0.86
CLN3-222ENST00000566083 OXTP01178 125 aa9.66□□□□□ -0.86
CLN3-222ENST00000566083 PRSS1P07477 247 aa9.66□□□□□ -0.86
CLN3-222ENST00000566083 SUMO4Q6EEV6 95 aa9.66□□□□□ -0.86
CLN3-222ENST00000566083 RAB19A4D1S5 217 aa9.65□□□□□ -0.87
CLN3-222ENST00000566083 UBE2L6O14933 153 aa9.65□□□□□ -0.87
CLN3-222ENST00000566083 BCL2P10415 239 aa9.65□□□□□ -0.87
CLN3-222ENST00000566083 NTF3P20783 257 aa9.65□□□□□ -0.87
CLN3-222ENST00000566083 CLPSL2Q6UWE3 100 aa9.65□□□□□ -0.87
CLN3-222ENST00000566083 LYZL1Q6UWQ5 148 aa9.65□□□□□ -0.87
CLN3-222ENST00000566083 SLC51BQ86UW2 128 aa9.65□□□□□ -0.87
CLN3-222ENST00000566083 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.64□□□□□ -0.87
CLN3-222ENST00000566083 CNBPP62633 177 aaKnown RBP9.64□□□□□ -0.87
CLN3-222ENST00000566083 IFITM2Q01629 132 aa9.64□□□□□ -0.87
CLN3-222ENST00000566083 COTL1Q14019 142 aa9.64□□□□□ -0.87
CLN3-222ENST00000566083 SERTAD4-AS1Q5TG53 156 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms