RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 TM2D2Q9BX73 214 aa12.21□□□□□ -0.45
CLN3-221ENST00000566057 URGCP-MRPS24S4R325 110 aa12.21□□□□□ -0.45
CLN3-221ENST00000566057 TRBV6-8A0A0A6YYG3 113 aa12.2□□□□□ -0.46
CLN3-221ENST00000566057 K7EN84 100 aa12.2□□□□□ -0.46
CLN3-221ENST00000566057 SMIM17P0DL12 118 aa12.2□□□□□ -0.46
CLN3-221ENST00000566057 XGP55808 180 aa12.2□□□□□ -0.46
CLN3-221ENST00000566057 LYZL1Q6UWQ5 148 aa12.2□□□□□ -0.46
CLN3-221ENST00000566057 Q8N814 137 aa12.2□□□□□ -0.46
CLN3-221ENST00000566057 BIN3Q9NQY0 253 aa12.2□□□□□ -0.46
CLN3-221ENST00000566057 KLK12Q9UKR0 248 aa12.2□□□□□ -0.46
CLN3-221ENST00000566057 XKRY2A2RUG3 117 aa12.19□□□□□ -0.46
CLN3-221ENST00000566057 GCSHP23434 173 aa12.19□□□□□ -0.46
CLN3-221ENST00000566057 CACNG7P62955 275 aa12.19□□□□□ -0.46
CLN3-221ENST00000566057 TOR2AQ5JU69 321 aa12.19□□□□□ -0.46
CLN3-221ENST00000566057 RNASE7Q9H1E1 156 aaKnown RBP12.19□□□□□ -0.46
CLN3-221ENST00000566057 A0A087WX48 190 aa12.18□□□□□ -0.46
CLN3-221ENST00000566057 IGLV5-52A0A0A0MRZ9 124 aa12.18□□□□□ -0.46
CLN3-221ENST00000566057 F2Z2F3 143 aa12.18□□□□□ -0.46
CLN3-221ENST00000566057 MGPP08493 103 aa12.18□□□□□ -0.46
CLN3-221ENST00000566057 TMEM262E9PQX1 116 aa12.17□□□□□ -0.46
CLN3-221ENST00000566057 M0QY20 66 aa12.17□□□□□ -0.46
CLN3-221ENST00000566057 LECT2O14960 151 aa12.17□□□□□ -0.46
CLN3-221ENST00000566057 NTF3P20783 257 aa12.17□□□□□ -0.46
CLN3-221ENST00000566057 SUMO4Q6EEV6 95 aa12.17□□□□□ -0.46
CLN3-221ENST00000566057 NTM-AS1Q6ZSK4 140 aa12.17□□□□□ -0.46
CLN3-221ENST00000566057 NTN5Q8WTR8 489 aaPredicted RBP12.17□□□□□ -0.46
CLN3-221ENST00000566057 UBE2WQ96B02 151 aa12.16□□□□□ -0.46
CLN3-221ENST00000566057 CHCHD7Q9BUK0 85 aa12.16□□□□□ -0.46
CLN3-221ENST00000566057 TMEM250H0YL14 139 aa12.15□□□□□ -0.46
CLN3-221ENST00000566057 BAALCQ8WXS3 180 aa12.15□□□□□ -0.46
CLN3-221ENST00000566057 RPP21Q9H633 154 aaKnown RBP12.15□□□□□ -0.46
CLN3-221ENST00000566057 IGKV2D-24A0A075B6R9 120 aa12.14□□□□□ -0.47
CLN3-221ENST00000566057 CTRLP40313 264 aa12.14□□□□□ -0.47
CLN3-221ENST00000566057 MPV17L2Q567V2 206 aa12.14□□□□□ -0.47
CLN3-221ENST00000566057 WDR73Q6P4I2 378 aa12.14□□□□□ -0.47
CLN3-221ENST00000566057 KCNIP4Q6PIL6 250 aa12.14□□□□□ -0.47
CLN3-221ENST00000566057 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.14□□□□□ -0.47
CLN3-221ENST00000566057 CHCHD5Q9BSY4 110 aa12.14□□□□□ -0.47
CLN3-221ENST00000566057 ELOBQ15370 118 aa12.13□□□□□ -0.47
CLN3-221ENST00000566057 GTSF1Q8WW33 167 aa12.13□□□□□ -0.47
CLN3-221ENST00000566057 CNFNQ9BYD5 112 aa12.13□□□□□ -0.47
CLN3-221ENST00000566057 COX11Q9Y6N1 276 aa12.13□□□□□ -0.47
CLN3-221ENST00000566057 TRGC1P0CF51 173 aa12.12□□□□□ -0.47
CLN3-221ENST00000566057 CEBPGP53567 150 aa12.12□□□□□ -0.47
CLN3-221ENST00000566057 TWIST1Q15672 202 aa12.12□□□□□ -0.47
CLN3-221ENST00000566057 ATRAIDQ6UW56 229 aa12.12□□□□□ -0.47
CLN3-221ENST00000566057 ENHOQ6UWT2 76 aa12.12□□□□□ -0.47
CLN3-221ENST00000566057 C15orf54Q8N8G6 183 aa12.12□□□□□ -0.47
CLN3-221ENST00000566057 Q8N976 141 aa12.12□□□□□ -0.47
CLN3-221ENST00000566057 RMI2Q96E14 147 aa12.12□□□□□ -0.47
CLN3-221ENST00000566057 DPH3P1Q9H4G8 78 aa12.12□□□□□ -0.47
CLN3-221ENST00000566057 H7C1H1 209 aa12.11□□□□□ -0.47
CLN3-221ENST00000566057 HAMPP81172 84 aa12.11□□□□□ -0.47
CLN3-221ENST00000566057 TMEM97Q5BJF2 176 aa12.11□□□□□ -0.47
CLN3-221ENST00000566057 RASL11AQ6T310 242 aa12.11□□□□□ -0.47
CLN3-221ENST00000566057 EIF5A2Q9GZV4 153 aaKnown RBP12.11□□□□□ -0.47
CLN3-221ENST00000566057 DNAH8Q96JB1 4490 aa12.11□□□□□ -0.47
CLN3-221ENST00000566057 SRRM2Q9UQ35 2752 aaKnown RBP12.1□□□□□ -0.47
CLN3-221ENST00000566057 FAT1Q14517 4588 aa12.1□□□□□ -0.47
CLN3-221ENST00000566057 GAGE6Q13070 117 aa12.1□□□□□ -0.47
CLN3-221ENST00000566057 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.09□□□□□ -0.47
CLN3-221ENST00000566057 GATCO43716 136 aaKnown RBP12.09□□□□□ -0.47
CLN3-221ENST00000566057 ANGP03950 147 aaKnown RBP12.09□□□□□ -0.47
CLN3-221ENST00000566057 Q0VG73 95 aa12.09□□□□□ -0.47
CLN3-221ENST00000566057 IQCJQ1A5X6 159 aa12.09□□□□□ -0.47
CLN3-221ENST00000566057 FAM210AQ96ND0 272 aa12.09□□□□□ -0.47
CLN3-221ENST00000566057 NIT2Q9NQR4 276 aa12.09□□□□□ -0.47
CLN3-221ENST00000566057 FAM30AQ9NZY2 134 aa12.09□□□□□ -0.47
CLN3-221ENST00000566057 VPS13BQ7Z7G8 4022 aa12.09□□□□□ -0.47
CLN3-221ENST00000566057 TRBV25-1A0A075B6N4 114 aa12.08□□□□□ -0.48
CLN3-221ENST00000566057 FOXA3P55318 350 aaPredicted RBP12.08□□□□□ -0.48
CLN3-221ENST00000566057 FAM231DQ6ZW35 169 aa12.08□□□□□ -0.48
CLN3-221ENST00000566057 DEFB104AQ8WTQ1 72 aa12.08□□□□□ -0.48
CLN3-221ENST00000566057 IGHV1-24A0A0C4DH33 117 aa12.07□□□□□ -0.48
CLN3-221ENST00000566057 EPM2AB3EWF7 344 aa12.07□□□□□ -0.48
CLN3-221ENST00000566057 SMR3BP02814 79 aaPredicted RBP12.07□□□□□ -0.48
CLN3-221ENST00000566057 SRP19P09132 144 aaKnown RBP12.07□□□□□ -0.48
CLN3-221ENST00000566057 RBX1P62877 108 aa12.07□□□□□ -0.48
CLN3-221ENST00000566057 GATD1Q8NB37 220 aa12.07□□□□□ -0.48
CLN3-221ENST00000566057 SMIM7Q9BQ49 75 aa12.07□□□□□ -0.48
CLN3-221ENST00000566057 TMEM70Q9BUB7 260 aa12.07□□□□□ -0.48
CLN3-221ENST00000566057 TRAV26-2A0A0B4J265 109 aa12.06□□□□□ -0.48
CLN3-221ENST00000566057 NDUFS6O75380 124 aaKnown RBP12.06□□□□□ -0.48
CLN3-221ENST00000566057 CRPP02741 224 aa12.06□□□□□ -0.48
CLN3-221ENST00000566057 PKIAP61925 76 aa12.06□□□□□ -0.48
CLN3-221ENST00000566057 PGLYRP4Q96LB8 373 aa12.06□□□□□ -0.48
CLN3-221ENST00000566057 C1orf43Q9BWL3 253 aa12.06□□□□□ -0.48
CLN3-221ENST00000566057 A8MWL6 223 aa12.05□□□□□ -0.48
CLN3-221ENST00000566057 LINC01620Q4KN68 170 aa12.05□□□□□ -0.48
CLN3-221ENST00000566057 LINC01551Q86U37 167 aa12.05□□□□□ -0.48
CLN3-221ENST00000566057 LINC00269Q8N2A0 174 aa12.05□□□□□ -0.48
CLN3-221ENST00000566057 PRR34Q9NV39 138 aa12.05□□□□□ -0.48
CLN3-221ENST00000566057 ZNF727A8MUV8 499 aa12.04□□□□□ -0.48
CLN3-221ENST00000566057 CLPSL2Q6UWE3 100 aa12.04□□□□□ -0.48
CLN3-221ENST00000566057 MIAQ16674 131 aa12.03□□□□□ -0.48
CLN3-221ENST00000566057 CT83Q5H943 113 aa12.03□□□□□ -0.48
CLN3-221ENST00000566057 Q5VSD8 79 aa12.02□□□□□ -0.49
CLN3-221ENST00000566057 KRTAP26-1Q6PEX3 210 aa12.02□□□□□ -0.49
CLN3-221ENST00000566057 FRZBQ92765 325 aa12.02□□□□□ -0.49
CLN3-221ENST00000566057 RPL39LQ96EH5 51 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms