RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FOXA3P55318 350 aaPredicted RBP11.85□□□□□ -0.51
CLN3-217ENST00000565354 NAT8BQ9UHF3 227 aa11.85□□□□□ -0.51
CLN3-217ENST00000565354 TMEM218A2RU14 115 aa11.84□□□□□ -0.51
CLN3-217ENST00000565354 LINC00862A6NCI5 91 aa11.84□□□□□ -0.51
CLN3-217ENST00000565354 RIGQ13278 110 aa11.84□□□□□ -0.51
CLN3-217ENST00000565354 Q6ZR54 194 aa11.84□□□□□ -0.51
CLN3-217ENST00000565354 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.84□□□□□ -0.51
CLN3-217ENST00000565354 GTSF1LQ9H1H1 148 aa11.84□□□□□ -0.51
CLN3-217ENST00000565354 SIVA1O15304 175 aa11.83□□□□□ -0.52
CLN3-217ENST00000565354 OR10J3Q5JRS4 329 aa11.83□□□□□ -0.52
CLN3-217ENST00000565354 NUP35Q8NFH5 326 aa11.83□□□□□ -0.52
CLN3-217ENST00000565354 TRBV7-3A0A075B6L6 115 aa11.82□□□□□ -0.52
CLN3-217ENST00000565354 TRAV8-6A0A0B4J262 113 aa11.82□□□□□ -0.52
CLN3-217ENST00000565354 MT-ND4LP03901 98 aa11.82□□□□□ -0.52
CLN3-217ENST00000565354 TIRAPP58753 221 aa11.82□□□□□ -0.52
CLN3-217ENST00000565354 TTC32Q5I0X7 151 aa11.82□□□□□ -0.52
CLN3-217ENST00000565354 SUMO4Q6EEV6 95 aa11.82□□□□□ -0.52
CLN3-217ENST00000565354 Q9UF83 564 aa11.82□□□□□ -0.52
CLN3-217ENST00000565354 NBDYA0A0U1RRE5 68 aa11.81□□□□□ -0.52
CLN3-217ENST00000565354 SMIM27A0A1W2PRY6 76 aa11.81□□□□□ -0.52
CLN3-217ENST00000565354 LINC00315P59091 139 aa11.81□□□□□ -0.52
CLN3-217ENST00000565354 NEXN-AS1Q8NBZ9 246 aa11.81□□□□□ -0.52
CLN3-217ENST00000565354 ANAPC16Q96DE5 110 aa11.81□□□□□ -0.52
CLN3-217ENST00000565354 TNFRSF18Q9Y5U5 241 aa11.81□□□□□ -0.52
CLN3-217ENST00000565354 CDK2AP2O75956 126 aa11.8□□□□□ -0.52
CLN3-217ENST00000565354 LINC00694P0DN24 101 aa11.8□□□□□ -0.52
CLN3-217ENST00000565354 LELP1Q5T871 98 aa11.8□□□□□ -0.52
CLN3-217ENST00000565354 MAPKAPK5-AS1Q8N8E1 139 aa11.8□□□□□ -0.52
CLN3-217ENST00000565354 SEC11CQ9BY50 192 aa11.8□□□□□ -0.52
CLN3-217ENST00000565354 LRP1BQ9NZR2 4599 aa11.79□□□□□ -0.52
CLN3-217ENST00000565354 ADCYAP1P18509 176 aa11.79□□□□□ -0.52
CLN3-217ENST00000565354 UBE2D3P61077 147 aa11.79□□□□□ -0.52
CLN3-217ENST00000565354 UBE2D2P62837 147 aa11.79□□□□□ -0.52
CLN3-217ENST00000565354 RASL11AQ6T310 242 aa11.79□□□□□ -0.52
CLN3-217ENST00000565354 WFDC10BQ8IUB3 73 aa11.79□□□□□ -0.52
CLN3-217ENST00000565354 DNAJC30Q96LL9 226 aa11.79□□□□□ -0.52
CLN3-217ENST00000565354 TRAV9-2A0A087WT02 112 aa11.78□□□□□ -0.52
CLN3-217ENST00000565354 A0A087WWC5 75 aa11.78□□□□□ -0.52
CLN3-217ENST00000565354 M0QY20 66 aa11.78□□□□□ -0.52
CLN3-217ENST00000565354 C1orf134Q5TEV5 83 aa11.78□□□□□ -0.52
CLN3-217ENST00000565354 TMEM191AQ9H0A3 160 aa11.78□□□□□ -0.52
CLN3-217ENST00000565354 IGHV3-38A0A0C4DH36 116 aa11.77□□□□□ -0.53
CLN3-217ENST00000565354 NIT2Q9NQR4 276 aa11.77□□□□□ -0.53
CLN3-217ENST00000565354 TRAV26-2A0A0B4J265 109 aa11.76□□□□□ -0.53
CLN3-217ENST00000565354 A0A1B0GW15 77 aa11.76□□□□□ -0.53
CLN3-217ENST00000565354 C16orf90A8MZG2 172 aa11.76□□□□□ -0.53
CLN3-217ENST00000565354 S100A8P05109 93 aa11.76□□□□□ -0.53
CLN3-217ENST00000565354 CAMPP49913 170 aa11.76□□□□□ -0.53
CLN3-217ENST00000565354 MRPL54Q6P161 138 aaKnown RBP11.76□□□□□ -0.53
CLN3-217ENST00000565354 HERC1Q15751 4861 aa11.75□□□□□ -0.53
CLN3-217ENST00000565354 TMEM97Q5BJF2 176 aa11.75□□□□□ -0.53
CLN3-217ENST00000565354 DAZ4Q86SG3 579 aaKnown RBP11.75□□□□□ -0.53
CLN3-217ENST00000565354 GATD1Q8NB37 220 aa11.75□□□□□ -0.53
CLN3-217ENST00000565354 DAZ3Q9NR90 486 aaKnown RBP11.75□□□□□ -0.53
CLN3-217ENST00000565354 KCNIP4Q6PIL6 250 aa11.74□□□□□ -0.53
CLN3-217ENST00000565354 AMN1Q8IY45 258 aa11.74□□□□□ -0.53
CLN3-217ENST00000565354 APOBP04114 4563 aaKnown RBP11.73□□□□□ -0.53
CLN3-217ENST00000565354 DNAH10OSP0CZ25 163 aa11.73□□□□□ -0.53
CLN3-217ENST00000565354 HBBP68871 147 aa11.73□□□□□ -0.53
CLN3-217ENST00000565354 Q8N1X5 172 aa11.73□□□□□ -0.53
CLN3-217ENST00000565354 C6orf223Q8N319 242 aa11.73□□□□□ -0.53
CLN3-217ENST00000565354 FRZBQ92765 325 aa11.73□□□□□ -0.53
CLN3-217ENST00000565354 URGCP-MRPS24S4R325 110 aa11.73□□□□□ -0.53
CLN3-217ENST00000565354 IGHV3-30P01768 117 aa11.72□□□□□ -0.53
CLN3-217ENST00000565354 IGHV3-33P01772 117 aa11.72□□□□□ -0.53
CLN3-217ENST00000565354 IGHV3-30-3P0DP02 117 aa11.72□□□□□ -0.53
CLN3-217ENST00000565354 IGHV3-30-5P0DP03 117 aa11.72□□□□□ -0.53
CLN3-217ENST00000565354 RAB4AP20338 218 aa11.72□□□□□ -0.53
CLN3-217ENST00000565354 NDUFA5Q16718 116 aa11.72□□□□□ -0.53
CLN3-217ENST00000565354 C10orf126Q8N4M7 172 aa11.72□□□□□ -0.53
CLN3-217ENST00000565354 MRAP2Q96G30 205 aa11.72□□□□□ -0.53
CLN3-217ENST00000565354 CTDSP1Q9GZU7 261 aa11.72□□□□□ -0.53
CLN3-217ENST00000565354 K7EP13 123 aa11.71□□□□□ -0.53
CLN3-217ENST00000565354 TNP2Q05952 138 aa11.71□□□□□ -0.53
CLN3-217ENST00000565354 LINC01556Q5JQF7 62 aa11.71□□□□□ -0.53
CLN3-217ENST00000565354 ATP5L2Q7Z4Y8 100 aa11.71□□□□□ -0.53
CLN3-217ENST00000565354 RPL39LQ96EH5 51 aaKnown RBP11.71□□□□□ -0.53
CLN3-217ENST00000565354 KRTAP1-5Q9BYS1 174 aa11.71□□□□□ -0.53
CLN3-217ENST00000565354 CARHSP1Q9Y2V2 147 aaKnown RBP11.71□□□□□ -0.53
CLN3-217ENST00000565354 DMBT1Q9UGM3 2413 aaPredicted RBP11.71□□□□□ -0.54
CLN3-217ENST00000565354 TRBV6-8A0A0A6YYG3 113 aa11.7□□□□□ -0.54
CLN3-217ENST00000565354 RNF185Q96GF1 192 aa11.7□□□□□ -0.54
CLN3-217ENST00000565354 CHCHD5Q9BSY4 110 aa11.7□□□□□ -0.54
CLN3-217ENST00000565354 TRBV25-1A0A075B6N4 114 aa11.69□□□□□ -0.54
CLN3-217ENST00000565354 A0A087WX48 190 aa11.69□□□□□ -0.54
CLN3-217ENST00000565354 TMEM262E9PQX1 116 aa11.69□□□□□ -0.54
CLN3-217ENST00000565354 S100PP25815 95 aa11.69□□□□□ -0.54
CLN3-217ENST00000565354 C10orf91Q5T1B1 145 aa11.69□□□□□ -0.54
CLN3-217ENST00000565354 FAM104BQ5XKR9 115 aa11.69□□□□□ -0.54
CLN3-217ENST00000565354 BTF3L4Q96K17 158 aa11.69□□□□□ -0.54
CLN3-217ENST00000565354 ST20Q9HBF5 79 aa11.69□□□□□ -0.54
CLN3-217ENST00000565354 IGHV1-24A0A0C4DH33 117 aa11.68□□□□□ -0.54
CLN3-217ENST00000565354 A0A1B0GXF2 115 aa11.68□□□□□ -0.54
CLN3-217ENST00000565354 NCR2O95944 276 aa11.68□□□□□ -0.54
CLN3-217ENST00000565354 APOC3P02656 99 aa11.68□□□□□ -0.54
CLN3-217ENST00000565354 PKIAP61925 76 aa11.68□□□□□ -0.54
CLN3-217ENST00000565354 COTL1Q14019 142 aa11.68□□□□□ -0.54
CLN3-217ENST00000565354 RHEBQ15382 184 aa11.68□□□□□ -0.54
CLN3-217ENST00000565354 CLRN3Q8NCR9 226 aa11.68□□□□□ -0.54
CLN3-217ENST00000565354 IMMP2LQ96T52 175 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 194.5 ms