RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 LECT2O14960 151 aa9.77□□□□□ -0.85
CLN3-213ENST00000565047 GNG4P50150 75 aa9.77□□□□□ -0.85
CLN3-213ENST00000565047 SSTP61278 116 aa9.77□□□□□ -0.85
CLN3-213ENST00000565047 ENHOQ6UWT2 76 aa9.77□□□□□ -0.85
CLN3-213ENST00000565047 BAALCQ8WXS3 180 aa9.77□□□□□ -0.85
CLN3-213ENST00000565047 COX11Q9Y6N1 276 aa9.77□□□□□ -0.85
CLN3-213ENST00000565047 SMR3BP02814 79 aaPredicted RBP9.76□□□□□ -0.85
CLN3-213ENST00000565047 RPS20P60866 119 aaKnown RBP9.76□□□□□ -0.85
CLN3-213ENST00000565047 Q5VSD8 79 aa9.76□□□□□ -0.85
CLN3-213ENST00000565047 FER1L6-AS1Q8NA97 138 aa9.76□□□□□ -0.85
CLN3-213ENST00000565047 OR2D3Q8NGH3 330 aa9.76□□□□□ -0.85
CLN3-213ENST00000565047 UBE2WQ96B02 151 aa9.76□□□□□ -0.85
CLN3-213ENST00000565047 AP1S3Q96PC3 154 aa9.76□□□□□ -0.85
CLN3-213ENST00000565047 MED9Q9NWA0 146 aa9.76□□□□□ -0.85
CLN3-213ENST00000565047 URGCP-MRPS24S4R325 110 aa9.76□□□□□ -0.85
CLN3-213ENST00000565047 A0A087WX48 190 aa9.75□□□□□ -0.85
CLN3-213ENST00000565047 ELOBQ15370 118 aa9.75□□□□□ -0.85
CLN3-213ENST00000565047 MPV17L2Q567V2 206 aa9.75□□□□□ -0.85
CLN3-213ENST00000565047 LYPD6BQ8NI32 183 aa9.75□□□□□ -0.85
CLN3-213ENST00000565047 SRRM2Q9UQ35 2752 aaKnown RBP9.74□□□□□ -0.85
CLN3-213ENST00000565047 IGKV2D-24A0A075B6R9 120 aa9.74□□□□□ -0.85
CLN3-213ENST00000565047 F5H697 171 aa9.74□□□□□ -0.85
CLN3-213ENST00000565047 K7EN84 100 aa9.74□□□□□ -0.85
CLN3-213ENST00000565047 IFNA1P01562 189 aa9.74□□□□□ -0.85
CLN3-213ENST00000565047 CACNG7P62955 275 aa9.74□□□□□ -0.85
CLN3-213ENST00000565047 NUDT10Q8NFP7 164 aa9.74□□□□□ -0.85
CLN3-213ENST00000565047 DAZAP1Q96EP5 407 aaKnown RBP9.74□□□□□ -0.85
CLN3-213ENST00000565047 NUDT11Q96G61 164 aa9.74□□□□□ -0.85
CLN3-213ENST00000565047 CNFNQ9BYD5 112 aa9.74□□□□□ -0.85
CLN3-213ENST00000565047 F2Z2F3 143 aa9.73□□□□□ -0.85
CLN3-213ENST00000565047 P01737 135 aa9.73□□□□□ -0.85
CLN3-213ENST00000565047 TAGLN2P37802 199 aaKnown RBP9.73□□□□□ -0.85
CLN3-213ENST00000565047 SUMO4Q6EEV6 95 aa9.73□□□□□ -0.85
CLN3-213ENST00000565047 WDR73Q6P4I2 378 aa9.73□□□□□ -0.85
CLN3-213ENST00000565047 KRTAP26-1Q6PEX3 210 aa9.73□□□□□ -0.85
CLN3-213ENST00000565047 LYZL1Q6UWQ5 148 aa9.73□□□□□ -0.85
CLN3-213ENST00000565047 RMI2Q96E14 147 aa9.73□□□□□ -0.85
CLN3-213ENST00000565047 TPPP3Q9BW30 176 aa9.73□□□□□ -0.85
CLN3-213ENST00000565047 PRR34Q9NV39 138 aa9.73□□□□□ -0.85
CLN3-213ENST00000565047 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.72□□□□□ -0.85
CLN3-213ENST00000565047 TMEM262E9PQX1 116 aa9.72□□□□□ -0.85
CLN3-213ENST00000565047 SMIM17P0DL12 118 aa9.72□□□□□ -0.85
CLN3-213ENST00000565047 INAFM2P0DMQ5 153 aa9.72□□□□□ -0.85
CLN3-213ENST00000565047 CTRLP40313 264 aa9.72□□□□□ -0.85
CLN3-213ENST00000565047 Q0VG73 95 aa9.72□□□□□ -0.85
CLN3-213ENST00000565047 IQCJQ1A5X6 159 aa9.72□□□□□ -0.85
CLN3-213ENST00000565047 AKAP14Q86UN6 197 aa9.72□□□□□ -0.85
CLN3-213ENST00000565047 Q8N976 141 aa9.72□□□□□ -0.85
CLN3-213ENST00000565047 OCC1Q8TAD7 63 aa9.72□□□□□ -0.85
CLN3-213ENST00000565047 FRZBQ92765 325 aa9.72□□□□□ -0.85
CLN3-213ENST00000565047 A0A1B0GVG6 124 aa9.71□□□□□ -0.86
CLN3-213ENST00000565047 NTF3P20783 257 aa9.71□□□□□ -0.86
CLN3-213ENST00000565047 LINC01620Q4KN68 170 aa9.71□□□□□ -0.86
CLN3-213ENST00000565047 TMEM97Q5BJF2 176 aa9.71□□□□□ -0.86
CLN3-213ENST00000565047 C15orf54Q8N8G6 183 aa9.71□□□□□ -0.86
CLN3-213ENST00000565047 BIN3Q9NQY0 253 aa9.71□□□□□ -0.86
CLN3-213ENST00000565047 hCG_2014768A0A024R1R8 64 aa9.7□□□□□ -0.86
CLN3-213ENST00000565047 XKRY2A2RUG3 117 aa9.7□□□□□ -0.86
CLN3-213ENST00000565047 RBX1P62877 108 aa9.7□□□□□ -0.86
CLN3-213ENST00000565047 ALKAL2Q6UX46 152 aa9.7□□□□□ -0.86
CLN3-213ENST00000565047 CHCHD5Q9BSY4 110 aa9.7□□□□□ -0.86
CLN3-213ENST00000565047 RNASE7Q9H1E1 156 aaKnown RBP9.7□□□□□ -0.86
CLN3-213ENST00000565047 KCNIP4Q6PIL6 250 aa9.69□□□□□ -0.86
CLN3-213ENST00000565047 GTSF1Q8WW33 167 aa9.69□□□□□ -0.86
CLN3-213ENST00000565047 DPH3P1Q9H4G8 78 aa9.69□□□□□ -0.86
CLN3-213ENST00000565047 TRBV25-1A0A075B6N4 114 aa9.68□□□□□ -0.86
CLN3-213ENST00000565047 TMEM250H0YL14 139 aa9.68□□□□□ -0.86
CLN3-213ENST00000565047 H7C1H1 209 aa9.68□□□□□ -0.86
CLN3-213ENST00000565047 ANGP03950 147 aaKnown RBP9.68□□□□□ -0.86
CLN3-213ENST00000565047 MGPP08493 103 aa9.68□□□□□ -0.86
CLN3-213ENST00000565047 PKIAP61925 76 aa9.68□□□□□ -0.86
CLN3-213ENST00000565047 GAGE6Q13070 117 aa9.68□□□□□ -0.86
CLN3-213ENST00000565047 RASL11AQ6T310 242 aa9.68□□□□□ -0.86
CLN3-213ENST00000565047 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.68□□□□□ -0.86
CLN3-213ENST00000565047 C1orf43Q9BWL3 253 aa9.68□□□□□ -0.86
CLN3-213ENST00000565047 RPP21Q9H633 154 aaKnown RBP9.68□□□□□ -0.86
CLN3-213ENST00000565047 IGHV1-24A0A0C4DH33 117 aa9.67□□□□□ -0.86
CLN3-213ENST00000565047 FAM229AH3BQW9 127 aa9.67□□□□□ -0.86
CLN3-213ENST00000565047 TRGC1P0CF51 173 aa9.67□□□□□ -0.86
CLN3-213ENST00000565047 NKX2-5P52952 324 aaPredicted RBP9.67□□□□□ -0.86
CLN3-213ENST00000565047 BLOC1S1P78537 153 aa9.67□□□□□ -0.86
CLN3-213ENST00000565047 MIAQ16674 131 aa9.67□□□□□ -0.86
CLN3-213ENST00000565047 LINC00269Q8N2A0 174 aa9.67□□□□□ -0.86
CLN3-213ENST00000565047 C20orf203Q8NBC4 194 aa9.67□□□□□ -0.86
CLN3-213ENST00000565047 NIT2Q9NQR4 276 aa9.67□□□□□ -0.86
CLN3-213ENST00000565047 FOXA3P55318 350 aaPredicted RBP9.66□□□□□ -0.86
CLN3-213ENST00000565047 FAM231DQ6ZW35 169 aa9.66□□□□□ -0.86
CLN3-213ENST00000565047 GATD1Q8NB37 220 aa9.66□□□□□ -0.86
CLN3-213ENST00000565047 PGLYRP4Q96LB8 373 aa9.66□□□□□ -0.86
CLN3-213ENST00000565047 A0A1B0GUV1 79 aa9.65□□□□□ -0.86
CLN3-213ENST00000565047 NDUFS6O75380 124 aaKnown RBP9.65□□□□□ -0.86
CLN3-213ENST00000565047 CRPP02741 224 aa9.65□□□□□ -0.86
CLN3-213ENST00000565047 SCXQ7RTU7 201 aa9.65□□□□□ -0.86
CLN3-213ENST00000565047 GFRA4Q9GZZ7 299 aa9.65□□□□□ -0.86
CLN3-213ENST00000565047 IGLV4-60A0A075B6I1 120 aa9.64□□□□□ -0.87
CLN3-213ENST00000565047 USP17L23D6RBM5 183 aa9.64□□□□□ -0.87
CLN3-213ENST00000565047 KRTAP10-4P60372 401 aaPredicted RBP9.64□□□□□ -0.87
CLN3-213ENST00000565047 TWIST1Q15672 202 aa9.64□□□□□ -0.87
CLN3-213ENST00000565047 PKHD1L1Q86WI1 4243 aa9.64□□□□□ -0.87
CLN3-213ENST00000565047 FLG2Q5D862 2391 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms