RNA–Protein interactions for RNA: ENST00000564970.1

PTPN9-204, Transcript of protein tyrosine phosphatase, non-receptor type 9, human

TSL 5

Gene PTPN9, Length 726 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN9-204	ENST00000564970	CD28	P10747	220 aa		4.68	□□□□□ -1.66
PTPN9-204	ENST00000564970	GRN	P28799	593 aa	Known RBP	4.68	□□□□□ -1.66
PTPN9-204	ENST00000564970	NSUN5P1	Q3KNT7	163 aa		4.68	□□□□□ -1.66
PTPN9-204	ENST00000564970	WDR86	Q86TI4	376 aa		4.68	□□□□□ -1.66
PTPN9-204	ENST00000564970	CLEC2B	Q92478	149 aa		4.68	□□□□□ -1.66
PTPN9-204	ENST00000564970	LITAF	Q99732	161 aa		4.68	□□□□□ -1.66
PTPN9-204	ENST00000564970	UBL5	Q9BZL1	73 aa		4.68	□□□□□ -1.66
PTPN9-204	ENST00000564970	CXXC4	Q9H2H0	198 aa		4.68	□□□□□ -1.66
PTPN9-204	ENST00000564970	UNC13C	Q8NB66	2214 aa		4.68	□□□□□ -1.66
PTPN9-204	ENST00000564970	FBN3	Q75N90	2809 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	IGLV3-12	A0A075B6K2	115 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	IGHV1-18	A0A0C4DH31	117 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	TRBV6-5	A0A0K0K1A5	114 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970		F8WEM9	126 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	CCL21	O00585	134 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	SAA1	P0DJI8	122 aa	Predicted RBP	4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	MIF	P14174	115 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	TSPEAR-AS2	P59090	65 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	RPL39P5	Q59GN2	51 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	SPANXN1	Q5VSR9	72 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970		Q6ZVQ6	151 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	PHF5A	Q7RTV0	110 aa	Known RBP	4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	KRTAP1-3	Q8IUG1	177 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	C14orf178	Q8N769	122 aa	Predicted RBP	4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	C8orf49	Q96NF6	230 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	RBM12B-AS1	Q9P1G2	102 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	SPRR3	Q9UBC9	169 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	WDFY3	Q8IZQ1	3526 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	OTOGL	Q3ZCN5	2332 aa		4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	TET2	Q6N021	2002 aa	Predicted RBP	4.67	□□□□□ -1.66
PTPN9-204	ENST00000564970	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970		M0R1W7	72 aa		4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970	SAA2	P0DJI9	122 aa	Predicted RBP	4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970	CGB3	P0DN86	165 aa		4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970	CGB7	P0DN87	165 aa		4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970	RPL28	P46779	137 aa	Known RBP	4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970	APOC4	P55056	127 aa		4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970	LYZ	P61626	148 aa		4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970	ECSCR	Q19T08	205 aa		4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970	DEFB110	Q30KQ9	67 aa		4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970	C17orf82	Q86X59	251 aa	Predicted RBP	4.66	□□□□□ -1.66
PTPN9-204	ENST00000564970	CABIN1	Q9Y6J0	2220 aa		4.65	□□□□□ -1.66
PTPN9-204	ENST00000564970	IGKV3D-7	A0A0C4DH55	119 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970		E7EQL1	145 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970		F6UB75	175 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	SPRY2	O43597	315 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	MRPL33	O75394	65 aa	Known RBP	4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	PDE6G	P18545	87 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	CXCL6	P80162	114 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	WT1-AS	Q06250	92 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	RSPO4	Q2I0M5	234 aa	Predicted RBP	4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	HIST2H2BC	Q6DN03	193 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	HIST2H2BD	Q6DRA6	164 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	CXCL17	Q6UXB2	119 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	ZNF833P	Q6ZTB9	187 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	UBE2E2	Q96LR5	201 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	KRTAP9-2	Q9BYQ4	174 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	LINC00846	Q9NV44	126 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	MRPL36	Q9P0J6	103 aa	Known RBP	4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	CTSZ	Q9UBR2	303 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	CCL26	Q9Y258	94 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	MYO9A	B2RTY4	2548 aa		4.65	□□□□□ -1.67
PTPN9-204	ENST00000564970	ABCA12	Q86UK0	2595 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	CNOT1	A5YKK6	2376 aa	Known RBP	4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	IGF2R	P11717	2491 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	DOPEY1	Q5JWR5	2465 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	IGHV3-43	A0A0B4J1X8	118 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	IGHV5-10-1	A0A0J9YXX1	117 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	TRBV12-3	P01733	135 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	GRP	P07492	148 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	IGHV3-43D	P0DP04	118 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	MLANA	Q16655	118 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	ATP11AUN	Q6ZP68	121 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	ZFAND3	Q9H8U3	227 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	NDUFA12	Q9UI09	145 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	PHLDA3	Q9Y5J5	127 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	LAMA5	O15230	3695 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	PIEZO2	Q9H5I5	2752 aa		4.64	□□□□□ -1.67
PTPN9-204	ENST00000564970	CFAP46	Q8IYW2	2715 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	UBR5	O95071	2799 aa	Predicted RBP	4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	IGHV7-4-1	A0A0J9YVY3	117 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970		A0A1W2PP55	124 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	DEFB108A	A8MXU0	73 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	NDUFA1	O15239	70 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	IGHV3-30-3	P0DP02	117 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	UBE2A	P49459	152 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	POLR2K	P53803	58 aa	Known RBP	4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	SS18	Q15532	418 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	LPAL2	Q16609	132 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	RNF5	Q99942	180 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	ESM1	Q9NQ30	184 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	MSRB1	Q9NZV6	116 aa		4.63	□□□□□ -1.67
PTPN9-204	ENST00000564970	TRBV7-4	A0A0J9YYF1	115 aa		4.62	□□□□□ -1.67
PTPN9-204	ENST00000564970	KRTAP9-6	A0A140TA67	174 aa		4.62	□□□□□ -1.67
PTPN9-204	ENST00000564970		E7EUB6	86 aa		4.62	□□□□□ -1.67
PTPN9-204	ENST00000564970		M0R378	163 aa		4.62	□□□□□ -1.67
PTPN9-204	ENST00000564970	TSHB	P01222	138 aa		4.62	□□□□□ -1.67
PTPN9-204	ENST00000564970	RNASE4	P34096	147 aa	Known RBP	4.62	□□□□□ -1.67
PTPN9-204	ENST00000564970	FUS	P35637	526 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
PTPN9-204	ENST00000564970	RPL27A	P46776	148 aa	Known RBP	4.62	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms