RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 C17orf58Q2M2W7 97 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 Q8N6K4 173 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 SPTSSBQ8NFR3 76 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 PRAC1Q96KF2 57 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 FAM167A-AS1Q96KT0 104 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 C11orf1Q9H5F2 150 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 UBE2D4Q9Y2X8 147 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 TIAM2Q8IVF5 1701 aa3.53□□□□□ -1.85
VPS35-205ENST00000563984 NRXN2Q9P2S2 1712 aa3.53□□□□□ -1.85
VPS35-205ENST00000563984 PLXNA2O75051 1894 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 SZT2Q5T011 3432 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 LTBP2Q14767 1821 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 AGRNO00468 2067 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 IGHV3-38A0A0C4DH36 116 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 TRBV30A0A0K0K1B3 111 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 A0A1B0GVY2 172 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 ZNF815PA8K554 130 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 C16orf90A8MZG2 172 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 K7EQG2 157 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 NPPCP23582 126 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 DYNAPQ8N1N2 210 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 SMCR5Q8TEV8 140 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 FAM104AQ969W3 186 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 RETNLBQ9BQ08 111 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 BPESC1Q9GZL8 116 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 DPM3Q9P2X0 92 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 COL4A6Q14031 1691 aa3.52□□□□□ -1.85
VPS35-205ENST00000563984 SCN3AQ9NY46 2000 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 IGLV3-12A0A075B6K2 115 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 IGHV3-74A0A0B4J1X5 117 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 LY6G6DO95868 133 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 CHTF8P0CG12 524 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 NOVP48745 357 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 TSPEAR-AS2P59090 65 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 FAM229BQ4G0N7 80 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 C9orf116Q5BN46 136 aaPredicted RBP3.51□□□□□ -1.85
VPS35-205ENST00000563984 GDF5OSQ5U4N7 250 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 PFN4Q8NHR9 129 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 B9D2Q9BPU9 175 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 LINC00467Q9BRT7 94 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 LIMD2Q9BT23 127 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 TTTY13Q9BZ97 58 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 CDC42SE1Q9NRR8 79 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 TRIOBPQ9H2D6 2365 aa3.51□□□□□ -1.85
VPS35-205ENST00000563984 LTBP1Q14766 1721 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 IGLV7-46A0A075B6I9 117 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 TRAV22A0A0B4J277 110 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 hDV103S1A0JD37 113 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 E7EUB6 86 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 C5orf67F2Z3F1 127 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 EDDM3BP56851 147 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 LCE3AQ5TA76 89 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 CSNK1G2-AS1Q8NCQ2 148 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 LINC00597Q9H2U6 94 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 PSENENQ9NZ42 101 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 PCDH15Q96QU1 1955 aa3.5□□□□□ -1.85
VPS35-205ENST00000563984 NCOA6Q14686 2063 aaPredicted RBP3.49□□□□□ -1.85
VPS35-205ENST00000563984 IGHV3OR16-10A0A075B7F0 116 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 IGKV1-6A0A0C4DH72 117 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 PIN1P1O15428 100 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 IGKV1-39P01597 117 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 IGKV1D-39P04432 117 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 CCL5P13501 91 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 SPINT3P49223 89 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 C15orf32Q32M92 178 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 SFTA2Q6UW10 78 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 Q6ZRP5 223 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 ATXN7L3BQ96GX2 97 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 COL11A1P12107 1806 aaPredicted RBP3.49□□□□□ -1.85
VPS35-205ENST00000563984 COL6A3P12111 3177 aa3.49□□□□□ -1.85
VPS35-205ENST00000563984 LRP4O75096 1905 aa3.48□□□□□ -1.85
VPS35-205ENST00000563984 MYO16Q9Y6X6 1858 aa3.48□□□□□ -1.85
VPS35-205ENST00000563984 IGHV3-35A0A0C4DH35 117 aa3.48□□□□□ -1.85
VPS35-205ENST00000563984 SDHAF1A6NFY7 115 aa3.48□□□□□ -1.85
VPS35-205ENST00000563984 TMEM14DPA8MWL7 114 aa3.48□□□□□ -1.85
VPS35-205ENST00000563984 PLNP26678 52 aa3.48□□□□□ -1.85
VPS35-205ENST00000563984 C2orf83Q53S99 150 aa3.48□□□□□ -1.85
VPS35-205ENST00000563984 UBALD1Q8TB05 177 aa3.48□□□□□ -1.85
VPS35-205ENST00000563984 DSCAML1Q8TD84 2053 aa3.48□□□□□ -1.85
VPS35-205ENST00000563984 NOTCH2Q04721 2471 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 IGKV2D-26A0A0A0MRZ7 120 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 IGHV3-43A0A0B4J1X8 118 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 PINLYPA6NC86 204 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 CHKB-CPT1BH3BT56 60 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 IGHV3-11P01762 117 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 IGHV3-33P01772 117 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 CCL3P10147 92 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 REG3GQ6UW15 175 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 CASC2Q6XLA1 102 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 ZFAND2AQ8N6M9 145 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 Q8N7P7 452 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 CAMK2N2Q96S95 79 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 WFDC6Q9BQY6 131 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 PLA2G12AQ9BZM1 189 aa3.47□□□□□ -1.85
VPS35-205ENST00000563984 K7ERS5 55 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 SPINK4O60575 86 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 IGLV1-51P01701 117 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 IGHV1-69P01742 117 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 IGHV3-30-3P0DP02 117 aa3.46□□□□□ -1.86
VPS35-205ENST00000563984 EIF4EBP1Q13541 118 aaPredicted RBP3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms