RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 PRADC1Q9BSG0 188 aa6.7□□□□□ -1.34
CLK3-208ENST00000562626 MRPS16Q9Y3D3 137 aaKnown RBP6.7□□□□□ -1.34
CLK3-208ENST00000562626 IGHV3-38A0A0C4DH36 116 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 C7orf77A4D0Y5 90 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 M0R2N4 97 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 MT-ND4LP03901 98 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 CAMPP49913 170 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 CCL18P55774 89 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 UBE2D3P61077 147 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 UBE2D2P62837 147 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 AMN1Q8IY45 258 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 CLRN3Q8NCR9 226 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 ATP6V0E2Q8NHE4 81 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 DEFB104AQ8WTQ1 72 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 ANAPC16Q96DE5 110 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 DNAH17Q9UFH2 4485 aa6.69□□□□□ -1.34
CLK3-208ENST00000562626 TRBV10-1A0A0K0K1A3 114 aa6.68□□□□□ -1.34
CLK3-208ENST00000562626 SMKR1H3BMG3 65 aa6.68□□□□□ -1.34
CLK3-208ENST00000562626 PPP1R2P9O14990 202 aa6.68□□□□□ -1.34
CLK3-208ENST00000562626 RAB4AP20338 218 aa6.68□□□□□ -1.34
CLK3-208ENST00000562626 RPS10P46783 165 aaKnown RBP6.68□□□□□ -1.34
CLK3-208ENST00000562626 RIGQ13278 110 aa6.68□□□□□ -1.34
CLK3-208ENST00000562626 ATRAIDQ6UW56 229 aa6.68□□□□□ -1.34
CLK3-208ENST00000562626 UPK3BQ9BT76 320 aa6.68□□□□□ -1.34
CLK3-208ENST00000562626 TMEM191AQ9H0A3 160 aa6.68□□□□□ -1.34
CLK3-208ENST00000562626 TRBV7-3A0A075B6L6 115 aa6.67□□□□□ -1.34
CLK3-208ENST00000562626 NCR2O95944 276 aa6.67□□□□□ -1.34
CLK3-208ENST00000562626 APOC3P02656 99 aa6.67□□□□□ -1.34
CLK3-208ENST00000562626 MRPL51Q4U2R6 128 aaKnown RBP6.67□□□□□ -1.34
CLK3-208ENST00000562626 Q6ZR54 194 aa6.67□□□□□ -1.34
CLK3-208ENST00000562626 NTM-AS1Q6ZSK4 140 aa6.67□□□□□ -1.34
CLK3-208ENST00000562626 BORCS7Q96B45 105 aa6.67□□□□□ -1.34
CLK3-208ENST00000562626 GTSF1LQ9H1H1 148 aa6.67□□□□□ -1.34
CLK3-208ENST00000562626 TIRAPP58753 221 aa6.66□□□□□ -1.34
CLK3-208ENST00000562626 RPL36AP83881 106 aaKnown RBP6.66□□□□□ -1.34
CLK3-208ENST00000562626 RASL11AQ6T310 242 aa6.66□□□□□ -1.34
CLK3-208ENST00000562626 RPL36ALQ969Q0 106 aaKnown RBP6.66□□□□□ -1.34
CLK3-208ENST00000562626 Q9H8V8 135 aa6.66□□□□□ -1.34
CLK3-208ENST00000562626 RPS10P5Q9NQ39 176 aa6.66□□□□□ -1.34
CLK3-208ENST00000562626 HBBP68871 147 aa6.65□□□□□ -1.34
CLK3-208ENST00000562626 FAM104BQ5XKR9 115 aa6.65□□□□□ -1.34
CLK3-208ENST00000562626 NRACQ8N912 160 aa6.65□□□□□ -1.34
CLK3-208ENST00000562626 CTDSP1Q9GZU7 261 aa6.65□□□□□ -1.34
CLK3-208ENST00000562626 NIT2Q9NQR4 276 aa6.65□□□□□ -1.34
CLK3-208ENST00000562626 URGCP-MRPS24S4R325 110 aa6.65□□□□□ -1.34
CLK3-208ENST00000562626 FAT2Q9NYQ8 4349 aa6.64□□□□□ -1.35
CLK3-208ENST00000562626 A0A087WWC5 75 aa6.64□□□□□ -1.35
CLK3-208ENST00000562626 NBDYA0A0U1RRE5 68 aa6.64□□□□□ -1.35
CLK3-208ENST00000562626 SIVA1O15304 175 aa6.64□□□□□ -1.35
CLK3-208ENST00000562626 RHEBQ15382 184 aa6.64□□□□□ -1.35
CLK3-208ENST00000562626 LELP1Q5T871 98 aa6.64□□□□□ -1.35
CLK3-208ENST00000562626 SMIM15Q7Z3B0 74 aa6.64□□□□□ -1.35
CLK3-208ENST00000562626 SH2D6Q7Z4S9 175 aa6.64□□□□□ -1.35
CLK3-208ENST00000562626 IMMP2LQ96T52 175 aa6.64□□□□□ -1.35
CLK3-208ENST00000562626 TNFRSF18Q9Y5U5 241 aa6.64□□□□□ -1.35
CLK3-208ENST00000562626 H7C1H1 209 aa6.63□□□□□ -1.35
CLK3-208ENST00000562626 OR10J3Q5JRS4 329 aa6.63□□□□□ -1.35
CLK3-208ENST00000562626 ATP5L2Q7Z4Y8 100 aa6.63□□□□□ -1.35
CLK3-208ENST00000562626 DNAJC30Q96LL9 226 aa6.63□□□□□ -1.35
CLK3-208ENST00000562626 A0A1B0GW15 77 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 RTL8CO15255 209 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 NPYP01303 97 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 IGHV3-30P01768 117 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 IGHV3-33P01772 117 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 DNAH10OSP0CZ25 163 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 IGHV3-30-3P0DP02 117 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 IGHV3-30-5P0DP03 117 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 TMEM136Q6ZRR5 245 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 SVBPQ8N300 66 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 MRAP2Q96G30 205 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 BTF3L4Q96K17 158 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 YPEL4Q96NS1 127 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 TMEM242Q9NWH2 141 aa6.62□□□□□ -1.35
CLK3-208ENST00000562626 PKD1P98161 4303 aa6.61□□□□□ -1.35
CLK3-208ENST00000562626 TRBV6-8A0A0A6YYG3 113 aa6.61□□□□□ -1.35
CLK3-208ENST00000562626 TGIF2-C20orf24A0A0A6YYL0 155 aa6.61□□□□□ -1.35
CLK3-208ENST00000562626 TRBV6-5A0A0K0K1A5 114 aa6.61□□□□□ -1.35
CLK3-208ENST00000562626 SDHAF1A6NFY7 115 aa6.61□□□□□ -1.35
CLK3-208ENST00000562626 D6R8Y8 96 aa6.61□□□□□ -1.35
CLK3-208ENST00000562626 SNAPINO95295 136 aa6.61□□□□□ -1.35
CLK3-208ENST00000562626 POLR2KP53803 58 aaKnown RBP6.61□□□□□ -1.35
CLK3-208ENST00000562626 TMEM70Q9BUB7 260 aa6.61□□□□□ -1.35
CLK3-208ENST00000562626 UBR4Q5T4S7 5183 aa6.6□□□□□ -1.35
CLK3-208ENST00000562626 TRAV8-6A0A0B4J262 113 aa6.6□□□□□ -1.35
CLK3-208ENST00000562626 TSHBP01222 138 aa6.6□□□□□ -1.35
CLK3-208ENST00000562626 ELOBQ15370 118 aa6.6□□□□□ -1.35
CLK3-208ENST00000562626 LINC01556Q5JQF7 62 aa6.6□□□□□ -1.35
CLK3-208ENST00000562626 KCNIP4Q6PIL6 250 aa6.6□□□□□ -1.35
CLK3-208ENST00000562626 DAZ4Q86SG3 579 aaKnown RBP6.6□□□□□ -1.35
CLK3-208ENST00000562626 NIT1Q86X76 327 aa6.6□□□□□ -1.35
CLK3-208ENST00000562626 CBLN2Q8IUK8 224 aa6.6□□□□□ -1.35
CLK3-208ENST00000562626 FRZBQ92765 325 aa6.6□□□□□ -1.35
CLK3-208ENST00000562626 DAZ3Q9NR90 486 aaKnown RBP6.6□□□□□ -1.35
CLK3-208ENST00000562626 DNAH11Q96DT5 4516 aa6.59□□□□□ -1.35
CLK3-208ENST00000562626 TRAV9-1A0A075B6T8 112 aa6.59□□□□□ -1.35
CLK3-208ENST00000562626 TNFRSF6BO95407 300 aa6.59□□□□□ -1.35
CLK3-208ENST00000562626 S100A8P05109 93 aa6.59□□□□□ -1.35
CLK3-208ENST00000562626 CKS2P33552 79 aa6.59□□□□□ -1.35
CLK3-208ENST00000562626 GAGE6Q13070 117 aa6.59□□□□□ -1.35
CLK3-208ENST00000562626 IQCJQ1A5X6 159 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms