RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SRSF2Q01130 221 aaKnown RBP10.04□□□□□ -0.8
CLK3-206ENST00000562078 ORMDL2Q53FV1 153 aa10.04□□□□□ -0.8
CLK3-206ENST00000562078 IGLV4-69A0A075B6H9 119 aa10.03□□□□□ -0.8
CLK3-206ENST00000562078 IGHV4-30-2A0A087WSY4 118 aa10.03□□□□□ -0.8
CLK3-206ENST00000562078 POLQO75417 2590 aa10.03□□□□□ -0.8
CLK3-206ENST00000562078 ZFHX3Q15911 3703 aa10.03□□□□□ -0.8
CLK3-206ENST00000562078 IGHV4-61A0A0C4DH41 118 aa10.02□□□□□ -0.8
CLK3-206ENST00000562078 F8WDY8 70 aa10.02□□□□□ -0.8
CLK3-206ENST00000562078 FANCD2OSQ96PS1 177 aa10.02□□□□□ -0.8
CLK3-206ENST00000562078 ABCA12Q86UK0 2595 aa10.02□□□□□ -0.8
CLK3-206ENST00000562078 H7C423 109 aa10.02□□□□□ -0.81
CLK3-206ENST00000562078 TRIAP1O43715 76 aa10.02□□□□□ -0.81
CLK3-206ENST00000562078 DEFB104AQ8WTQ1 72 aa10.02□□□□□ -0.81
CLK3-206ENST00000562078 RPL39LQ96EH5 51 aaKnown RBP10.02□□□□□ -0.81
CLK3-206ENST00000562078 IGLV11-55A0A075B6I3 123 aa10.01□□□□□ -0.81
CLK3-206ENST00000562078 PRAC2D3DTV9 90 aa10.01□□□□□ -0.81
CLK3-206ENST00000562078 LINC01600Q96MT4 127 aa10.01□□□□□ -0.81
CLK3-206ENST00000562078 AMELXQ99217 191 aa10.01□□□□□ -0.81
CLK3-206ENST00000562078 PTPN13Q12923 2485 aa10.01□□□□□ -0.81
CLK3-206ENST00000562078 GCN1Q92616 2671 aaKnown RBP10.01□□□□□ -0.81
CLK3-206ENST00000562078 IGHV7-4-1A0A0J9YVY3 117 aa10.01□□□□□ -0.81
CLK3-206ENST00000562078 SUMO2P61956 95 aaKnown RBP10.01□□□□□ -0.81
CLK3-206ENST00000562078 Q8N9W7 124 aa10.01□□□□□ -0.81
CLK3-206ENST00000562078 LINC00527Q9UJ94 153 aa10.01□□□□□ -0.81
CLK3-206ENST00000562078 IGHV7-81A0A0B4J1V7 117 aa10□□□□□ -0.81
CLK3-206ENST00000562078 UQCRQO14949 82 aa10□□□□□ -0.81
CLK3-206ENST00000562078 SPRY2O43597 315 aa10□□□□□ -0.81
CLK3-206ENST00000562078 DSCR9P59020 149 aa10□□□□□ -0.81
CLK3-206ENST00000562078 TMEM170BQ5T4T1 132 aa10□□□□□ -0.81
CLK3-206ENST00000562078 SPANXN1Q5VSR9 72 aa10□□□□□ -0.81
CLK3-206ENST00000562078 HIST2H2BCQ6DN03 193 aa10□□□□□ -0.81
CLK3-206ENST00000562078 MUSTN1Q8IVN3 82 aa10□□□□□ -0.81
CLK3-206ENST00000562078 A0A1B0GX51 115 aa10□□□□□ -0.81
CLK3-206ENST00000562078 IGHV3-23P01764 117 aa10□□□□□ -0.81
CLK3-206ENST00000562078 LINC00526Q96FQ7 95 aa10□□□□□ -0.81
CLK3-206ENST00000562078 A0A0B4J2C4 111 aa9.99□□□□□ -0.81
CLK3-206ENST00000562078 FAM240AA0A1B0GVK7 77 aa9.99□□□□□ -0.81
CLK3-206ENST00000562078 TSHBP01222 138 aa9.99□□□□□ -0.81
CLK3-206ENST00000562078 IGHV3OR16-10A0A075B7F0 116 aa9.99□□□□□ -0.81
CLK3-206ENST00000562078 DUX5Q96PT3 197 aa9.99□□□□□ -0.81
CLK3-206ENST00000562078 NBPF19A0A087WUL8 3843 aa9.99□□□□□ -0.81
CLK3-206ENST00000562078 APCP25054 2843 aa9.99□□□□□ -0.81
CLK3-206ENST00000562078 F8W735 103 aaPredicted RBP9.98□□□□□ -0.81
CLK3-206ENST00000562078 OR13C6PQ8NH95 151 aa9.98□□□□□ -0.81
CLK3-206ENST00000562078 SMAD5-AS1Q9Y6J3 95 aa9.98□□□□□ -0.81
CLK3-206ENST00000562078 IGHV3OR16-8A0A075B7F1 116 aa9.98□□□□□ -0.81
CLK3-206ENST00000562078 J3QQQ9 107 aa9.98□□□□□ -0.81
CLK3-206ENST00000562078 ECSCRQ19T08 205 aa9.98□□□□□ -0.81
CLK3-206ENST00000562078 METTL26Q96S19 204 aa9.98□□□□□ -0.81
CLK3-206ENST00000562078 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.98□□□□□ -0.811e-6■■□□□ 12.5
CLK3-206ENST00000562078 RNF182Q8N6D2 247 aa9.97□□□□□ -0.81
CLK3-206ENST00000562078 RNF223E7ERA6 249 aa9.97□□□□□ -0.81
CLK3-206ENST00000562078 LGALS3P17931 250 aaKnown RBP9.97□□□□□ -0.81
CLK3-206ENST00000562078 DEFB113Q30KQ7 82 aa9.97□□□□□ -0.81
CLK3-206ENST00000562078 ZNRF2Q8NHG8 242 aa9.97□□□□□ -0.81
CLK3-206ENST00000562078 EEF1AKMT3Q96AZ1 226 aa9.97□□□□□ -0.81
CLK3-206ENST00000562078 TRBV30A0A0K0K1B3 111 aa9.96□□□□□ -0.81
CLK3-206ENST00000562078 ATP6V0E1O15342 81 aa9.96□□□□□ -0.81
CLK3-206ENST00000562078 TMEM219Q86XT9 240 aa9.96□□□□□ -0.81
CLK3-206ENST00000562078 SMCR5Q8TEV8 140 aa9.96□□□□□ -0.81
CLK3-206ENST00000562078 CLEC2BQ92478 149 aa9.96□□□□□ -0.81
CLK3-206ENST00000562078 SLC50A1Q9BRV3 221 aa9.96□□□□□ -0.82
CLK3-206ENST00000562078 CYSTM1Q9H1C7 97 aa9.96□□□□□ -0.82
CLK3-206ENST00000562078 NAV2Q8IVL1 2488 aa9.95□□□□□ -0.82
CLK3-206ENST00000562078 TRAV41A0A0B4J266 112 aa9.95□□□□□ -0.82
CLK3-206ENST00000562078 GAGE2AQ6NT46 116 aa9.95□□□□□ -0.82
CLK3-206ENST00000562078 BRD3OSQ6XYD6 125 aa9.95□□□□□ -0.82
CLK3-206ENST00000562078 IGHV3-64A0A075B6Q5 118 aa9.95□□□□□ -0.82
CLK3-206ENST00000562078 DEFB121Q5J5C9 76 aa9.95□□□□□ -0.82
CLK3-206ENST00000562078 F5H768 121 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 H3BT86 120 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 MSMBP08118 114 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 KIR2DL5BQ8NHK3 375 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 IMUPQ9GZP8 106 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 CSPG4Q6UVK1 2322 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 IGHV3-35A0A0C4DH35 117 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 TMEM223A0PJW6 202 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 G3V318 75 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 M0R381 172 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 C4orf26Q17RF5 130 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 Q6ZSV7 163 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 FAM110DQ8TAY7 271 aaPredicted RBP9.94□□□□□ -0.82
CLK3-206ENST00000562078 TP53TG1Q9Y2A0 90 aa9.94□□□□□ -0.82
CLK3-206ENST00000562078 IGHV1-69DA0A0B4J2H0 117 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 IGHV1-69P01742 117 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 RPS28P62857 69 aaKnown RBP9.93□□□□□ -0.82
CLK3-206ENST00000562078 RPL39P62891 51 aaKnown RBP9.93□□□□□ -0.82
CLK3-206ENST00000562078 C15orf32Q32M92 178 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 PAPPA-AS1Q5QFB9 102 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 ICOSQ9Y6W8 199 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 IGHV4-4A0A075B6R2 117 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.93□□□□□ -0.82
CLK3-206ENST00000562078 hADV29S1A0JD25 119 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 B4DSR2 109 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 CTSGP08311 255 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 COX7CP15954 63 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 C5orf56Q8N8D9 126 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 MAPK1IP1LQ8NDC0 245 aa9.93□□□□□ -0.82
CLK3-206ENST00000562078 MGPP08493 103 aa9.92□□□□□ -0.82
CLK3-206ENST00000562078 AGPAT4-IT1Q9H0P7 198 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms