RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 F2Z2F3 143 aa10.43□□□□□ -0.74
VPS39-203ENST00000561797 K7EN84 100 aa10.43□□□□□ -0.74
VPS39-203ENST00000561797 CEBPGP53567 150 aa10.43□□□□□ -0.74
VPS39-203ENST00000561797 KRTAP10-1P60331 282 aa10.43□□□□□ -0.74
VPS39-203ENST00000561797 KCNIP4Q6PIL6 250 aa10.43□□□□□ -0.74
VPS39-203ENST00000561797 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.43□□□□□ -0.74
VPS39-203ENST00000561797 RNASE7Q9H1E1 156 aaKnown RBP10.43□□□□□ -0.74
VPS39-203ENST00000561797 TRBV6-8A0A0A6YYG3 113 aa10.42□□□□□ -0.74
VPS39-203ENST00000561797 NTF3P20783 257 aa10.42□□□□□ -0.74
VPS39-203ENST00000561797 LYPD6BQ8NI32 183 aa10.42□□□□□ -0.74
VPS39-203ENST00000561797 DNAJC30Q96LL9 226 aa10.42□□□□□ -0.74
VPS39-203ENST00000561797 RYR1P21817 5038 aa10.41□□□□□ -0.74
VPS39-203ENST00000561797 IGLV5-52A0A0A0MRZ9 124 aa10.41□□□□□ -0.74
VPS39-203ENST00000561797 GCSHP23434 173 aa10.41□□□□□ -0.74
VPS39-203ENST00000561797 SUMO4Q6EEV6 95 aa10.41□□□□□ -0.74
VPS39-203ENST00000561797 Q8N814 137 aa10.41□□□□□ -0.74
VPS39-203ENST00000561797 RPP21Q9H633 154 aaKnown RBP10.41□□□□□ -0.74
VPS39-203ENST00000561797 TMEM250H0YL14 139 aa10.4□□□□□ -0.74
VPS39-203ENST00000561797 LECT2O14960 151 aa10.4□□□□□ -0.74
VPS39-203ENST00000561797 TRGC1P0CF51 173 aa10.4□□□□□ -0.74
VPS39-203ENST00000561797 WFDC2Q14508 124 aa10.4□□□□□ -0.74
VPS39-203ENST00000561797 UBE2WQ96B02 151 aa10.4□□□□□ -0.74
VPS39-203ENST00000561797 CHCHD7Q9BUK0 85 aa10.4□□□□□ -0.74
VPS39-203ENST00000561797 EIF5A2Q9GZV4 153 aaKnown RBP10.4□□□□□ -0.74
VPS39-203ENST00000561797 IGKV2D-24A0A075B6R9 120 aa10.39□□□□□ -0.75
VPS39-203ENST00000561797 H7C1H1 209 aa10.39□□□□□ -0.75
VPS39-203ENST00000561797 M0QY20 66 aa10.39□□□□□ -0.75
VPS39-203ENST00000561797 ELOBQ15370 118 aa10.39□□□□□ -0.75
VPS39-203ENST00000561797 NTM-AS1Q6ZSK4 140 aa10.39□□□□□ -0.75
VPS39-203ENST00000561797 Q8N1X5 172 aa10.39□□□□□ -0.75
VPS39-203ENST00000561797 RMI2Q96E14 147 aa10.39□□□□□ -0.75
VPS39-203ENST00000561797 CHCHD5Q9BSY4 110 aa10.39□□□□□ -0.75
VPS39-203ENST00000561797 DPH3P1Q9H4G8 78 aa10.39□□□□□ -0.75
VPS39-203ENST00000561797 LRP1BQ9NZR2 4599 aa10.38□□□□□ -0.75
VPS39-203ENST00000561797 GATCO43716 136 aaKnown RBP10.38□□□□□ -0.75
VPS39-203ENST00000561797 CTRLP40313 264 aa10.38□□□□□ -0.75
VPS39-203ENST00000561797 TWIST1Q15672 202 aa10.38□□□□□ -0.75
VPS39-203ENST00000561797 C15orf54Q8N8G6 183 aa10.38□□□□□ -0.75
VPS39-203ENST00000561797 NTN5Q8WTR8 489 aaPredicted RBP10.38□□□□□ -0.75
VPS39-203ENST00000561797 BAALCQ8WXS3 180 aa10.38□□□□□ -0.75
VPS39-203ENST00000561797 COX11Q9Y6N1 276 aa10.38□□□□□ -0.75
VPS39-203ENST00000561797 XGP55808 180 aa10.37□□□□□ -0.75
VPS39-203ENST00000561797 MPV17L2Q567V2 206 aa10.37□□□□□ -0.75
VPS39-203ENST00000561797 TMEM97Q5BJF2 176 aa10.37□□□□□ -0.75
VPS39-203ENST00000561797 WDR73Q6P4I2 378 aa10.37□□□□□ -0.75
VPS39-203ENST00000561797 RASL11AQ6T310 242 aa10.37□□□□□ -0.75
VPS39-203ENST00000561797 ANGP03950 147 aaKnown RBP10.36□□□□□ -0.75
VPS39-203ENST00000561797 GAGE6Q13070 117 aa10.36□□□□□ -0.75
VPS39-203ENST00000561797 ATRAIDQ6UW56 229 aa10.36□□□□□ -0.75
VPS39-203ENST00000561797 Q8N976 141 aa10.36□□□□□ -0.75
VPS39-203ENST00000561797 FAM210AQ96ND0 272 aa10.36□□□□□ -0.75
VPS39-203ENST00000561797 SMIM7Q9BQ49 75 aa10.36□□□□□ -0.75
VPS39-203ENST00000561797 PCLOQ9Y6V0 5065 aa10.35□□□□□ -0.75
VPS39-203ENST00000561797 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.35□□□□□ -0.75
VPS39-203ENST00000561797 TRBV25-1A0A075B6N4 114 aa10.35□□□□□ -0.75
VPS39-203ENST00000561797 CRPP02741 224 aa10.35□□□□□ -0.75
VPS39-203ENST00000561797 Q0VG73 95 aa10.35□□□□□ -0.75
VPS39-203ENST00000561797 DEFB104AQ8WTQ1 72 aa10.35□□□□□ -0.75
VPS39-203ENST00000561797 GTSF1Q8WW33 167 aa10.35□□□□□ -0.75
VPS39-203ENST00000561797 DNAH5Q8TE73 4624 aa10.35□□□□□ -0.75
VPS39-203ENST00000561797 ZNF727A8MUV8 499 aa10.34□□□□□ -0.75
VPS39-203ENST00000561797 SRP19P09132 144 aaKnown RBP10.34□□□□□ -0.75
VPS39-203ENST00000561797 PKIAP61925 76 aa10.34□□□□□ -0.75
VPS39-203ENST00000561797 ENHOQ6UWT2 76 aa10.34□□□□□ -0.75
VPS39-203ENST00000561797 FAM231DQ6ZW35 169 aa10.34□□□□□ -0.75
VPS39-203ENST00000561797 PGLYRP4Q96LB8 373 aa10.34□□□□□ -0.75
VPS39-203ENST00000561797 CNFNQ9BYD5 112 aa10.34□□□□□ -0.75
VPS39-203ENST00000561797 NIT2Q9NQR4 276 aa10.34□□□□□ -0.75
VPS39-203ENST00000561797 HSPG2P98160 4391 aa10.34□□□□□ -0.75
VPS39-203ENST00000561797 IGHV1-24A0A0C4DH33 117 aa10.33□□□□□ -0.76
VPS39-203ENST00000561797 A8MWL6 223 aa10.33□□□□□ -0.76
VPS39-203ENST00000561797 HAMPP81172 84 aa10.33□□□□□ -0.76
VPS39-203ENST00000561797 C1orf43Q9BWL3 253 aa10.33□□□□□ -0.76
VPS39-203ENST00000561797 TRAV26-2A0A0B4J265 109 aa10.32□□□□□ -0.76
VPS39-203ENST00000561797 FOXA3P55318 350 aaPredicted RBP10.32□□□□□ -0.76
VPS39-203ENST00000561797 RBX1P62877 108 aa10.32□□□□□ -0.76
VPS39-203ENST00000561797 IQCJQ1A5X6 159 aa10.32□□□□□ -0.76
VPS39-203ENST00000561797 CLPSL2Q6UWE3 100 aa10.32□□□□□ -0.76
VPS39-203ENST00000561797 LINC01551Q86U37 167 aa10.32□□□□□ -0.76
VPS39-203ENST00000561797 NDUFS6O75380 124 aaKnown RBP10.31□□□□□ -0.76
VPS39-203ENST00000561797 SMIM15Q7Z3B0 74 aa10.31□□□□□ -0.76
VPS39-203ENST00000561797 GATD1Q8NB37 220 aa10.31□□□□□ -0.76
VPS39-203ENST00000561797 APOBP04114 4563 aaKnown RBP10.31□□□□□ -0.76
VPS39-203ENST00000561797 EPM2AB3EWF7 344 aa10.3□□□□□ -0.76
VPS39-203ENST00000561797 SMR3BP02814 79 aaPredicted RBP10.3□□□□□ -0.76
VPS39-203ENST00000561797 LINC00269Q8N2A0 174 aa10.3□□□□□ -0.76
VPS39-203ENST00000561797 TMEM243Q9BU79 118 aa10.3□□□□□ -0.76
VPS39-203ENST00000561797 TMEM70Q9BUB7 260 aa10.3□□□□□ -0.76
VPS39-203ENST00000561797 HLA-DQA1P01909 254 aa10.29□□□□□ -0.76
VPS39-203ENST00000561797 MIAQ16674 131 aa10.29□□□□□ -0.76
VPS39-203ENST00000561797 LINC01620Q4KN68 170 aa10.29□□□□□ -0.76
VPS39-203ENST00000561797 CT83Q5H943 113 aa10.29□□□□□ -0.76
VPS39-203ENST00000561797 BORCS7Q96B45 105 aa10.29□□□□□ -0.76
VPS39-203ENST00000561797 FAM30AQ9NZY2 134 aa10.29□□□□□ -0.76
VPS39-203ENST00000561797 COTL1Q14019 142 aa10.28□□□□□ -0.76
VPS39-203ENST00000561797 TEX261Q6UWH6 196 aa10.28□□□□□ -0.76
VPS39-203ENST00000561797 RPL39LQ96EH5 51 aaKnown RBP10.28□□□□□ -0.76
VPS39-203ENST00000561797 OSTCQ9NRP0 149 aa10.28□□□□□ -0.76
VPS39-203ENST00000561797 UBE2L6O14933 153 aa10.27□□□□□ -0.77
VPS39-203ENST00000561797 AMTP48728 403 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms