RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 SLC51BQ86UW2 128 aa5.95□□□□□ -1.46
HDDC3-204ENST00000559834 KCNRGQ8N5I3 272 aa5.95□□□□□ -1.46
HDDC3-204ENST00000559834 STOML3Q8TAV4 291 aa5.95□□□□□ -1.46
HDDC3-204ENST00000559834 CHCHD5Q9BSY4 110 aa5.95□□□□□ -1.46
HDDC3-204ENST00000559834 A0A0D9SG52 128 aa5.94□□□□□ -1.46
HDDC3-204ENST00000559834 KANTRA0A1W2PQU2 76 aa5.94□□□□□ -1.46
HDDC3-204ENST00000559834 USP17L23D6RBM5 183 aa5.94□□□□□ -1.46
HDDC3-204ENST00000559834 F5H697 171 aa5.94□□□□□ -1.46
HDDC3-204ENST00000559834 LTAP01374 205 aa5.94□□□□□ -1.46
HDDC3-204ENST00000559834 FHITP49789 147 aa5.94□□□□□ -1.46
HDDC3-204ENST00000559834 ZNF56Q15929 161 aa5.94□□□□□ -1.46
HDDC3-204ENST00000559834 CST9LP1Q5W188 147 aa5.94□□□□□ -1.46
HDDC3-204ENST00000559834 ZNF471Q9BX82 626 aaPredicted RBP5.94□□□□□ -1.46
HDDC3-204ENST00000559834 MAP1LC3B2A6NCE7 125 aa5.93□□□□□ -1.46
HDDC3-204ENST00000559834 HLA-DQA1P01909 254 aa5.93□□□□□ -1.46
HDDC3-204ENST00000559834 S100A9P06702 114 aaKnown RBP5.93□□□□□ -1.46
HDDC3-204ENST00000559834 AKR1C3P42330 323 aa5.93□□□□□ -1.46
HDDC3-204ENST00000559834 MPV17L2Q567V2 206 aa5.93□□□□□ -1.46
HDDC3-204ENST00000559834 PRR27Q6MZM9 219 aa5.93□□□□□ -1.46
HDDC3-204ENST00000559834 C9orf163Q8N9P6 203 aa5.93□□□□□ -1.46
HDDC3-204ENST00000559834 NEXN-AS1Q8NBZ9 246 aa5.93□□□□□ -1.46
HDDC3-204ENST00000559834 CLRN3Q8NCR9 226 aa5.93□□□□□ -1.46
HDDC3-204ENST00000559834 MAP1LC3BQ9GZQ8 125 aa5.93□□□□□ -1.46
HDDC3-204ENST00000559834 MED9Q9NWA0 146 aa5.93□□□□□ -1.46
HDDC3-204ENST00000559834 PRSS1P07477 247 aa5.92□□□□□ -1.46
HDDC3-204ENST00000559834 CXCL1P09341 107 aa5.92□□□□□ -1.46
HDDC3-204ENST00000559834 SMIM17P0DL12 118 aa5.92□□□□□ -1.46
HDDC3-204ENST00000559834 RPL19P84098 196 aaKnown RBP5.92□□□□□ -1.46
HDDC3-204ENST00000559834 SPANXN1Q5VSR9 72 aa5.92□□□□□ -1.46
HDDC3-204ENST00000559834 DPH3Q96FX2 82 aa5.92□□□□□ -1.46
HDDC3-204ENST00000559834 TRBV25-1A0A075B6N4 114 aa5.91□□□□□ -1.46
HDDC3-204ENST00000559834 TEX46H3BTG2 121 aa5.91□□□□□ -1.46
HDDC3-204ENST00000559834 SDIM1Q6ZPB5 146 aa5.91□□□□□ -1.46
HDDC3-204ENST00000559834 BAGE2Q86Y30 109 aa5.91□□□□□ -1.46
HDDC3-204ENST00000559834 LINC00269Q8N2A0 174 aa5.91□□□□□ -1.46
HDDC3-204ENST00000559834 DAZAP1Q96EP5 407 aaKnown RBP5.91□□□□□ -1.46
HDDC3-204ENST00000559834 DERL1Q9BUN8 251 aa5.91□□□□□ -1.46
HDDC3-204ENST00000559834 SSBP4Q9BWG4 385 aaPredicted RBP5.91□□□□□ -1.46
HDDC3-204ENST00000559834 PRR34Q9NV39 138 aa5.91□□□□□ -1.46
HDDC3-204ENST00000559834 VAX2Q9UIW0 290 aa5.91□□□□□ -1.46
HDDC3-204ENST00000559834 TMA7Q9Y2S6 64 aaKnown RBP5.91□□□□□ -1.46
HDDC3-204ENST00000559834 SNAI2O43623 268 aa5.9□□□□□ -1.46
HDDC3-204ENST00000559834 PAGE4O60829 102 aa5.9□□□□□ -1.46
HDDC3-204ENST00000559834 SCO1O75880 301 aa5.9□□□□□ -1.46
HDDC3-204ENST00000559834 OR5AL1P0C617 328 aa5.9□□□□□ -1.46
HDDC3-204ENST00000559834 RBX1P62877 108 aa5.9□□□□□ -1.46
HDDC3-204ENST00000559834 Q6ZRU5 148 aa5.9□□□□□ -1.46
HDDC3-204ENST00000559834 OR10AG1Q8NH19 301 aa5.9□□□□□ -1.46
HDDC3-204ENST00000559834 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.89□□□□□ -1.47
HDDC3-204ENST00000559834 TRAV8-4A0A0B4J246 113 aa5.89□□□□□ -1.47
HDDC3-204ENST00000559834 IGHV1-24A0A0C4DH33 117 aa5.89□□□□□ -1.47
HDDC3-204ENST00000559834 H7C1H1 209 aa5.89□□□□□ -1.47
HDDC3-204ENST00000559834 P01737 135 aa5.89□□□□□ -1.47
HDDC3-204ENST00000559834 GZMBP10144 247 aa5.89□□□□□ -1.47
HDDC3-204ENST00000559834 SSTP61278 116 aa5.89□□□□□ -1.47
HDDC3-204ENST00000559834 GAGE6Q13070 117 aa5.89□□□□□ -1.47
HDDC3-204ENST00000559834 NTM-AS1Q6ZSK4 140 aa5.89□□□□□ -1.47
HDDC3-204ENST00000559834 AP5S1Q9NUS5 200 aa5.89□□□□□ -1.47
HDDC3-204ENST00000559834 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.89□□□□□ -1.47
HDDC3-204ENST00000559834 MUC21A0A0G2JKD1 596 aa5.88□□□□□ -1.47
HDDC3-204ENST00000559834 MUC21A0A140T8X8 626 aa5.88□□□□□ -1.47
HDDC3-204ENST00000559834 hDV102S1A0JD36 115 aa5.88□□□□□ -1.47
HDDC3-204ENST00000559834 HNRNPA3P51991 378 aaKnown RBP5.88□□□□□ -1.47
HDDC3-204ENST00000559834 REG3AQ06141 175 aa5.88□□□□□ -1.47
HDDC3-204ENST00000559834 IQCJQ1A5X6 159 aa5.88□□□□□ -1.47
HDDC3-204ENST00000559834 CLPSL2Q6UWE3 100 aa5.88□□□□□ -1.47
HDDC3-204ENST00000559834 SFT2D1Q8WV19 159 aa5.88□□□□□ -1.47
HDDC3-204ENST00000559834 AP1S3Q96PC3 154 aa5.88□□□□□ -1.47
HDDC3-204ENST00000559834 MLST8Q9BVC4 326 aa5.88□□□□□ -1.47
HDDC3-204ENST00000559834 CYTL1Q9NRR1 136 aa5.88□□□□□ -1.47
HDDC3-204ENST00000559834 IGHV3-64A0A075B6Q5 118 aa5.87□□□□□ -1.47
HDDC3-204ENST00000559834 A0A1B0GUV1 79 aa5.87□□□□□ -1.47
HDDC3-204ENST00000559834 UMAD1C9J7I0 102 aa5.87□□□□□ -1.47
HDDC3-204ENST00000559834 CNBPP62633 177 aaKnown RBP5.87□□□□□ -1.47
HDDC3-204ENST00000559834 KRTAP26-1Q6PEX3 210 aa5.87□□□□□ -1.47
HDDC3-204ENST00000559834 MBD3L1Q8WWY6 194 aa5.87□□□□□ -1.47
HDDC3-204ENST00000559834 RNF185Q96GF1 192 aa5.87□□□□□ -1.47
HDDC3-204ENST00000559834 DPH3P1Q9H4G8 78 aa5.87□□□□□ -1.47
HDDC3-204ENST00000559834 KIF25-AS1Q9Y6Z4 181 aa5.87□□□□□ -1.47
HDDC3-204ENST00000559834 IGLV10-54A0A075B6I4 117 aa5.86□□□□□ -1.47
HDDC3-204ENST00000559834 SCO2A0A1W2PP80 73 aa5.86□□□□□ -1.47
HDDC3-204ENST00000559834 M0QY20 66 aa5.86□□□□□ -1.47
HDDC3-204ENST00000559834 RPS20P60866 119 aaKnown RBP5.86□□□□□ -1.47
HDDC3-204ENST00000559834 CIRBPQ14011 172 aaKnown RBP5.86□□□□□ -1.47
HDDC3-204ENST00000559834 TMEM243Q9BU79 118 aa5.86□□□□□ -1.47
HDDC3-204ENST00000559834 DNAH8Q96JB1 4490 aa5.86□□□□□ -1.47
HDDC3-204ENST00000559834 PANO1I0J062 215 aa5.85□□□□□ -1.47
HDDC3-204ENST00000559834 MGPP08493 103 aa5.85□□□□□ -1.47
HDDC3-204ENST00000559834 H2AFB1P0C5Y9 115 aa5.85□□□□□ -1.47
HDDC3-204ENST00000559834 CACNG7P62955 275 aa5.85□□□□□ -1.47
HDDC3-204ENST00000559834 WDR73Q6P4I2 378 aa5.85□□□□□ -1.47
HDDC3-204ENST00000559834 CFAP161Q6P656 301 aa5.85□□□□□ -1.47
HDDC3-204ENST00000559834 C20orf203Q8NBC4 194 aa5.85□□□□□ -1.47
HDDC3-204ENST00000559834 FAM213BQ8TBF2 198 aa5.85□□□□□ -1.47
HDDC3-204ENST00000559834 TPPP3Q9BW30 176 aa5.85□□□□□ -1.47
HDDC3-204ENST00000559834 A0A087WYN8 130 aa5.84□□□□□ -1.47
HDDC3-204ENST00000559834 A0A1B0GV50 99 aa5.84□□□□□ -1.47
HDDC3-204ENST00000559834 XKRY2A2RUG3 117 aa5.84□□□□□ -1.47
HDDC3-204ENST00000559834 RAB19A4D1S5 217 aa5.84□□□□□ -1.47
HDDC3-204ENST00000559834 F2Z2F3 143 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms