RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 A0A096LPF7 62 aa6.44□□□□□ -1.38
LDLR-210ENST00000559340 M0QY20 66 aa6.44□□□□□ -1.38
LDLR-210ENST00000559340 HLA-DQA1P01909 254 aa6.44□□□□□ -1.38
LDLR-210ENST00000559340 MT-ND6P03923 174 aa6.44□□□□□ -1.38
LDLR-210ENST00000559340 CKS2P33552 79 aa6.44□□□□□ -1.38
LDLR-210ENST00000559340 Q6ZSN1 163 aa6.44□□□□□ -1.38
LDLR-210ENST00000559340 ATP6V0E2Q8NHE4 81 aa6.44□□□□□ -1.38
LDLR-210ENST00000559340 ZNRF2Q8NHG8 242 aa6.44□□□□□ -1.38
LDLR-210ENST00000559340 DNAH7Q8WXX0 4024 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 GAGE12JA6NER3 117 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 TIRAPP58753 221 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 GAGE1Q13065 139 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 GAGE4Q13068 117 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 GAGE5Q13069 117 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 ELOBQ15370 118 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 GAGE13Q4V321 117 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 OR10J3Q5JRS4 329 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 DAZ4Q86SG3 579 aaKnown RBP6.43□□□□□ -1.38
LDLR-210ENST00000559340 UBE2DNLQ8IWF7 75 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 AMN1Q8IY45 258 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 NEXN-AS1Q8NBZ9 246 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 GNB1LQ9BYB4 327 aa6.43□□□□□ -1.38
LDLR-210ENST00000559340 DAZ3Q9NR90 486 aaKnown RBP6.43□□□□□ -1.38
LDLR-210ENST00000559340 MRPL51Q4U2R6 128 aaKnown RBP6.42□□□□□ -1.38
LDLR-210ENST00000559340 ATRAIDQ6UW56 229 aa6.42□□□□□ -1.38
LDLR-210ENST00000559340 RNF185Q96GF1 192 aa6.42□□□□□ -1.38
LDLR-210ENST00000559340 GTSF1LQ9H1H1 148 aa6.42□□□□□ -1.38
LDLR-210ENST00000559340 ST20Q9HBF5 79 aa6.42□□□□□ -1.38
LDLR-210ENST00000559340 LAMTOR2Q9Y2Q5 125 aa6.42□□□□□ -1.38
LDLR-210ENST00000559340 LOC100131303A0A0U1RQF7 123 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 LCE6AA0A183 80 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 PHOX2AO14813 284 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 ATP6V1G1O75348 118 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 APCSP02743 223 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 UBE2D3P61077 147 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 UBE2D2P62837 147 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 LGALS9CQ6DKI2 356 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 LYPD5Q6UWN5 251 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 TMEM136Q6ZRR5 245 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 ORMDL3Q8N138 153 aa6.41□□□□□ -1.38
LDLR-210ENST00000559340 TGIF2-C20orf24A0A0A6YYL0 155 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 TRAV8-6A0A0B4J262 113 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 TRAV26-2A0A0B4J265 109 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 TRBV6-5A0A0K0K1A5 114 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 D6R8Y8 96 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 TCAPO15273 167 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 PKIAP61925 76 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 FABP9Q0Z7S8 132 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 ESRGQ1W209 222 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 PRELID3AQ96N28 172 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 C20orf78Q9BR46 151 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 TRAPPC1Q9Y5R8 145 aa6.4□□□□□ -1.38
LDLR-210ENST00000559340 TENM2Q9NT68 2774 aa6.39□□□□□ -1.39
LDLR-210ENST00000559340 VCYO14598 125 aa6.39□□□□□ -1.39
LDLR-210ENST00000559340 NCR2O95944 276 aa6.39□□□□□ -1.39
LDLR-210ENST00000559340 LINC00694P0DN24 101 aa6.39□□□□□ -1.39
LDLR-210ENST00000559340 PMCHP20382 165 aa6.39□□□□□ -1.39
LDLR-210ENST00000559340 COTL1Q14019 142 aa6.39□□□□□ -1.39
LDLR-210ENST00000559340 LELP1Q5T871 98 aa6.39□□□□□ -1.39
LDLR-210ENST00000559340 CBLN2Q8IUK8 224 aa6.39□□□□□ -1.39
LDLR-210ENST00000559340 MRPL18Q9H0U6 180 aaKnown RBP6.39□□□□□ -1.39
LDLR-210ENST00000559340 MRPS16Q9Y3D3 137 aaKnown RBP6.39□□□□□ -1.39
LDLR-210ENST00000559340 SDHAF1A6NFY7 115 aa6.38□□□□□ -1.39
LDLR-210ENST00000559340 I3L3M4 83 aa6.38□□□□□ -1.39
LDLR-210ENST00000559340 TNFRSF6BO95407 300 aa6.38□□□□□ -1.39
LDLR-210ENST00000559340 SUMO2P61956 95 aaKnown RBP6.38□□□□□ -1.39
LDLR-210ENST00000559340 RPL32P62910 135 aaKnown RBP6.38□□□□□ -1.39
LDLR-210ENST00000559340 RPL39LQ96EH5 51 aaKnown RBP6.38□□□□□ -1.39
LDLR-210ENST00000559340 KIR2DL4Q99706 377 aa6.38□□□□□ -1.39
LDLR-210ENST00000559340 UPK3BQ9BT76 320 aa6.38□□□□□ -1.39
LDLR-210ENST00000559340 MAP1LC3AQ9H492 121 aa6.38□□□□□ -1.39
LDLR-210ENST00000559340 DYNC2H1Q8NCM8 4307 aaKnown RBP6.37□□□□□ -1.39
LDLR-210ENST00000559340 TRBV25-1A0A075B6N4 114 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 TRAV9-2A0A087WT02 112 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 IGHV1-24A0A0C4DH33 117 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 SMKR1H3BMG3 65 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 LY6G6CO95867 125 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 POLR2KP53803 58 aaKnown RBP6.37□□□□□ -1.39
LDLR-210ENST00000559340 SMAGPQ0VAQ4 97 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 NRACQ8N912 160 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 LINC00476Q8WZB0 136 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 YPEL4Q96NS1 127 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 TMEM70Q9BUB7 260 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 Q9UF83 564 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 LINC00588Q9Y4M8 146 aa6.37□□□□□ -1.39
LDLR-210ENST00000559340 TRBV6-8A0A0A6YYG3 113 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 IGHV3-38A0A0C4DH36 116 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 TRBV27A0A0K0K1C4 114 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 PRSS47A8MTI9 375 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 K7EP13 123 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 SIVA1O15304 175 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 RAB5AP20339 215 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 G0S2P27469 103 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 FCER1GP30273 86 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 RPS10P46783 165 aaKnown RBP6.36□□□□□ -1.39
LDLR-210ENST00000559340 KIAA1644Q3SXP7 199 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 Q9H8V8 135 aa6.36□□□□□ -1.39
LDLR-210ENST00000559340 K7EMI3 77 aa6.35□□□□□ -1.39
LDLR-210ENST00000559340 UBE2L6O14933 153 aa6.35□□□□□ -1.39
LDLR-210ENST00000559340 NPYP01303 97 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms