RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 GATD1Q8NB37 220 aa14.73□□□□□ -0.05
CASC4-204ENST00000557945 NEXN-AS1Q8NBZ9 246 aa14.73□□□□□ -0.05
CASC4-204ENST00000557945 RNF185Q96GF1 192 aa14.73□□□□□ -0.05
CASC4-204ENST00000557945 TRAV9-1A0A075B6T8 112 aa14.72□□□□□ -0.05
CASC4-204ENST00000557945 ESRGQ1W209 222 aa14.72□□□□□ -0.05
CASC4-204ENST00000557945 ATP6V0E2Q8NHE4 81 aa14.72□□□□□ -0.05
CASC4-204ENST00000557945 TRBV7-3A0A075B6L6 115 aa14.71□□□□□ -0.06
CASC4-204ENST00000557945 LGALS9CQ6DKI2 356 aa14.71□□□□□ -0.06
CASC4-204ENST00000557945 LINC00476Q8WZB0 136 aa14.71□□□□□ -0.06
CASC4-204ENST00000557945 TNFRSF18Q9Y5U5 241 aa14.71□□□□□ -0.06
CASC4-204ENST00000557945 LINC00694P0DN24 101 aa14.7□□□□□ -0.06
CASC4-204ENST00000557945 FAM104BQ5XKR9 115 aa14.7□□□□□ -0.06
CASC4-204ENST00000557945 LYPD5Q6UWN5 251 aa14.7□□□□□ -0.06
CASC4-204ENST00000557945 MRAP2Q96G30 205 aa14.69□□□□□ -0.06
CASC4-204ENST00000557945 DNAJC30Q96LL9 226 aa14.69□□□□□ -0.06
CASC4-204ENST00000557945 NIT2Q9NQR4 276 aa14.69□□□□□ -0.06
CASC4-204ENST00000557945 LINC00588Q9Y4M8 146 aa14.69□□□□□ -0.06
CASC4-204ENST00000557945 UBE2D3P61077 147 aa14.68□□□□□ -0.06
CASC4-204ENST00000557945 UBE2D2P62837 147 aa14.68□□□□□ -0.06
CASC4-204ENST00000557945 FRZBQ92765 325 aa14.68□□□□□ -0.06
CASC4-204ENST00000557945 RPL39LQ96EH5 51 aaKnown RBP14.68□□□□□ -0.06
CASC4-204ENST00000557945 SMKR1H3BMG3 65 aa14.67□□□□□ -0.06
CASC4-204ENST00000557945 NCR2O95944 276 aa14.67□□□□□ -0.06
CASC4-204ENST00000557945 MRPL51Q4U2R6 128 aaKnown RBP14.67□□□□□ -0.06
CASC4-204ENST00000557945 LCE6AA0A183 80 aa14.66□□□□□ -0.06
CASC4-204ENST00000557945 GAS8-AS1O95177 125 aa14.66□□□□□ -0.06
CASC4-204ENST00000557945 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.66□□□□□ -0.06
CASC4-204ENST00000557945 GTSF1LQ9H1H1 148 aa14.66□□□□□ -0.06
CASC4-204ENST00000557945 IGHV3-38A0A0C4DH36 116 aa14.65□□□□□ -0.06
CASC4-204ENST00000557945 OR10J3Q5JRS4 329 aa14.65□□□□□ -0.06
CASC4-204ENST00000557945 CKS2P33552 79 aa14.64□□□□□ -0.07
CASC4-204ENST00000557945 MRPS16Q9Y3D3 137 aaKnown RBP14.64□□□□□ -0.07
CASC4-204ENST00000557945 TGIF2-C20orf24A0A0A6YYL0 155 aa14.63□□□□□ -0.07
CASC4-204ENST00000557945 TIRAPP58753 221 aa14.63□□□□□ -0.07
CASC4-204ENST00000557945 ELOBQ15370 118 aa14.63□□□□□ -0.07
CASC4-204ENST00000557945 TMEM136Q6ZRR5 245 aa14.63□□□□□ -0.07
CASC4-204ENST00000557945 DAZ4Q86SG3 579 aaKnown RBP14.63□□□□□ -0.07
CASC4-204ENST00000557945 CBLN2Q8IUK8 224 aa14.63□□□□□ -0.07
CASC4-204ENST00000557945 DAZ3Q9NR90 486 aaKnown RBP14.63□□□□□ -0.07
CASC4-204ENST00000557945 SMCO4Q9NRQ5 59 aa14.63□□□□□ -0.07
CASC4-204ENST00000557945 RPS10P46783 165 aaKnown RBP14.62□□□□□ -0.07
CASC4-204ENST00000557945 D6R8Y8 96 aa14.61□□□□□ -0.07
CASC4-204ENST00000557945 ST20Q9HBF5 79 aa14.61□□□□□ -0.07
CASC4-204ENST00000557945 ALMS1Q8TCU4 4167 aa14.61□□□□□ -0.07
CASC4-204ENST00000557945 PPP1R17O96001 155 aa14.6□□□□□ -0.07
CASC4-204ENST00000557945 COX19Q49B96 90 aa14.6□□□□□ -0.07
CASC4-204ENST00000557945 LELP1Q5T871 98 aa14.6□□□□□ -0.07
CASC4-204ENST00000557945 TRBV6-5A0A0K0K1A5 114 aa14.6□□□□□ -0.07
CASC4-204ENST00000557945 NRACQ8N912 160 aa14.6□□□□□ -0.07
CASC4-204ENST00000557945 UPK3BQ9BT76 320 aa14.6□□□□□ -0.07
CASC4-204ENST00000557945 GNB1LQ9BYB4 327 aa14.6□□□□□ -0.07
CASC4-204ENST00000557945 TRBV24-1A0A075B6N3 115 aa14.59□□□□□ -0.07
CASC4-204ENST00000557945 TRAV8-6A0A0B4J262 113 aa14.59□□□□□ -0.07
CASC4-204ENST00000557945 SDHAF1A6NFY7 115 aa14.59□□□□□ -0.07
CASC4-204ENST00000557945 HLA-DQA1P01909 254 aa14.59□□□□□ -0.07
CASC4-204ENST00000557945 APCSP02743 223 aa14.59□□□□□ -0.07
CASC4-204ENST00000557945 PPBPP02775 128 aa14.59□□□□□ -0.07
CASC4-204ENST00000557945 ORMDL3Q8N138 153 aa14.59□□□□□ -0.07
CASC4-204ENST00000557945 DEFB104AQ8WTQ1 72 aa14.59□□□□□ -0.07
CASC4-204ENST00000557945 LYSTQ99698 3801 aa14.58□□□□□ -0.08
CASC4-204ENST00000557945 Q9H8V8 135 aa14.58□□□□□ -0.08
CASC4-204ENST00000557945 IGLV2-18A0A075B6J9 118 aa14.57□□□□□ -0.08
CASC4-204ENST00000557945 TMEM97Q5BJF2 176 aa14.57□□□□□ -0.08
CASC4-204ENST00000557945 WFDC10BQ8IUB3 73 aa14.57□□□□□ -0.08
CASC4-204ENST00000557945 PRELID3AQ96N28 172 aa14.57□□□□□ -0.08
CASC4-204ENST00000557945 YPEL4Q96NS1 127 aa14.57□□□□□ -0.08
CASC4-204ENST00000557945 TRBV6-8A0A0A6YYG3 113 aa14.56□□□□□ -0.08
CASC4-204ENST00000557945 ATP6V1G1O75348 118 aa14.56□□□□□ -0.08
CASC4-204ENST00000557945 TNFRSF6BO95407 300 aa14.56□□□□□ -0.08
CASC4-204ENST00000557945 MT-ND6P03923 174 aa14.56□□□□□ -0.08
CASC4-204ENST00000557945 PMCHP20382 165 aa14.56□□□□□ -0.08
CASC4-204ENST00000557945 COTL1Q14019 142 aa14.56□□□□□ -0.08
CASC4-204ENST00000557945 KIAA1644Q3SXP7 199 aa14.56□□□□□ -0.08
CASC4-204ENST00000557945 TMEM70Q9BUB7 260 aa14.56□□□□□ -0.08
CASC4-204ENST00000557945 VPS13DQ5THJ4 4388 aa14.56□□□□□ -0.08
CASC4-204ENST00000557945 DNAH1Q9P2D7 4330 aa14.55□□□□□ -0.08
CASC4-204ENST00000557945 SIVA1O15304 175 aa14.55□□□□□ -0.08
CASC4-204ENST00000557945 NPYP01303 97 aa14.55□□□□□ -0.08
CASC4-204ENST00000557945 SUMO2P61956 95 aaKnown RBP14.55□□□□□ -0.08
CASC4-204ENST00000557945 MRPL18Q9H0U6 180 aaKnown RBP14.55□□□□□ -0.08
CASC4-204ENST00000557945 FABP9Q0Z7S8 132 aa14.54□□□□□ -0.08
CASC4-204ENST00000557945 NTM-AS1Q6ZSK4 140 aa14.54□□□□□ -0.08
CASC4-204ENST00000557945 I3L3M4 83 aa14.53□□□□□ -0.08
CASC4-204ENST00000557945 SCO1O75880 301 aa14.53□□□□□ -0.08
CASC4-204ENST00000557945 S100A1P23297 94 aa14.53□□□□□ -0.08
CASC4-204ENST00000557945 POLR2KP53803 58 aaKnown RBP14.53□□□□□ -0.08
CASC4-204ENST00000557945 C20orf78Q9BR46 151 aa14.53□□□□□ -0.08
CASC4-204ENST00000557945 TRAPPC1Q9Y5R8 145 aa14.53□□□□□ -0.08
CASC4-204ENST00000557945 TRBV25-1A0A075B6N4 114 aa14.52□□□□□ -0.08
CASC4-204ENST00000557945 IGHV1-24A0A0C4DH33 117 aa14.52□□□□□ -0.08
CASC4-204ENST00000557945 VCYO14598 125 aa14.52□□□□□ -0.08
CASC4-204ENST00000557945 PHOX2AO14813 284 aa14.52□□□□□ -0.08
CASC4-204ENST00000557945 SACSQ9NZJ4 4579 aa14.52□□□□□ -0.09
CASC4-204ENST00000557945 M0R2N4 97 aa14.51□□□□□ -0.09
CASC4-204ENST00000557945 AMTP48728 403 aa14.51□□□□□ -0.09
CASC4-204ENST00000557945 CHCHD5Q9BSY4 110 aa14.51□□□□□ -0.09
CASC4-204ENST00000557945 LAMTOR2Q9Y2Q5 125 aa14.51□□□□□ -0.09
CASC4-204ENST00000557945 TRBV27A0A0K0K1C4 114 aa14.5□□□□□ -0.09
CASC4-204ENST00000557945 KMT2CQ8NEZ4 4911 aaKnown RBP14.5□□□□□ -0.09
CASC4-204ENST00000557945 TMEM262E9PQX1 116 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms