RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433		A0A0J9YXY3	114 aa		12.02	□□□□□ -0.49
SHMT2-231	ENST00000557433	MRPS36	P82909	103 aa	Known RBP	12.02	□□□□□ -0.49
SHMT2-231	ENST00000557433	PIK3CD-AS1	Q5SR53	167 aa		12.02	□□□□□ -0.49
SHMT2-231	ENST00000557433	SPTA1	P02549	2419 aa		12.02	□□□□□ -0.49
SHMT2-231	ENST00000557433	RAX2	Q96IS3	184 aa		12.01	□□□□□ -0.49
SHMT2-231	ENST00000557433		A0A0J9YXV3	536 aa		12.01	□□□□□ -0.49
SHMT2-231	ENST00000557433	RPL13A	P40429	203 aa	Known RBP	12.01	□□□□□ -0.49
SHMT2-231	ENST00000557433	ZFAND6	Q6FIF0	208 aa		12.01	□□□□□ -0.49
SHMT2-231	ENST00000557433	OPRPN	Q99935	248 aa	Predicted RBP	12.01	□□□□□ -0.49
SHMT2-231	ENST00000557433	TIMM21	Q9BVV7	248 aa		12.01	□□□□□ -0.49
SHMT2-231	ENST00000557433	SPANXD	Q9BXN6	97 aa		12.01	□□□□□ -0.49
SHMT2-231	ENST00000557433	SPANXC	Q9NY87	97 aa		12.01	□□□□□ -0.49
SHMT2-231	ENST00000557433	MED13L	Q71F56	2210 aa		12	□□□□□ -0.49
SHMT2-231	ENST00000557433	EIF4EBP3	O60516	100 aa	Predicted RBP	12	□□□□□ -0.49
SHMT2-231	ENST00000557433	MSMB	P08118	114 aa		12	□□□□□ -0.49
SHMT2-231	ENST00000557433	LINC01620	Q4KN68	170 aa		12	□□□□□ -0.49
SHMT2-231	ENST00000557433	HRNR	Q86YZ3	2850 aa	Predicted RBP	12	□□□□□ -0.49
SHMT2-231	ENST00000557433	IGHV3-30-3	P0DP02	117 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	GATA3	P23771	443 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433		Q1RN00	199 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	WFDC12	Q8WWY7	111 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	SPTBN2	O15020	2390 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	DCHS1	Q96JQ0	3298 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	DCHS2	Q6V1P9	2916 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	TRAV12-2	A0A075B6T6	113 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	TRBV10-2	A0A0K0K1G8	114 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	CD28	P10747	220 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	TEX29	Q8N6K0	151 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	DEFB104A	Q8WTQ1	72 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	SPANXA1	Q9NS26	97 aa		11.99	□□□□□ -0.49
SHMT2-231	ENST00000557433	TRAV26-1	A0A087WT03	109 aa		11.98	□□□□□ -0.49
SHMT2-231	ENST00000557433	IGHV1-58	A0A0C4DH39	117 aa		11.98	□□□□□ -0.49
SHMT2-231	ENST00000557433	EDN2	P20800	178 aa		11.98	□□□□□ -0.49
SHMT2-231	ENST00000557433	SPINK13	Q1W4C9	94 aa		11.98	□□□□□ -0.49
SHMT2-231	ENST00000557433		Q5PR19	223 aa		11.98	□□□□□ -0.49
SHMT2-231	ENST00000557433	CITED1	Q99966	193 aa		11.98	□□□□□ -0.49
SHMT2-231	ENST00000557433	CCL19	Q99731	98 aa		11.98	□□□□□ -0.49
SHMT2-231	ENST00000557433	LITAF	Q99732	161 aa		11.98	□□□□□ -0.49
SHMT2-231	ENST00000557433	YAE1D1	Q9NRH1	226 aa		11.98	□□□□□ -0.49
SHMT2-231	ENST00000557433	LRBA	P50851	2863 aa		11.97	□□□□□ -0.49
SHMT2-231	ENST00000557433	TINCR	A0A1B0GVN0	87 aa		11.97	□□□□□ -0.49
SHMT2-231	ENST00000557433	C19orf84	I3L1E1	186 aa		11.97	□□□□□ -0.49
SHMT2-231	ENST00000557433	TIMM17B	O60830	172 aa		11.97	□□□□□ -0.49
SHMT2-231	ENST00000557433	TGFA	P01135	160 aa		11.97	□□□□□ -0.49
SHMT2-231	ENST00000557433	COX6C	P09669	75 aa		11.97	□□□□□ -0.49
SHMT2-231	ENST00000557433		Q6Q795	121 aa		11.96	□□□□□ -0.49
SHMT2-231	ENST00000557433		B4DSR2	109 aa		11.96	□□□□□ -0.5
SHMT2-231	ENST00000557433	IGKV3-20	P01619	116 aa		11.96	□□□□□ -0.5
SHMT2-231	ENST00000557433	TNFRSF18	Q9Y5U5	241 aa		11.96	□□□□□ -0.5
SHMT2-231	ENST00000557433	IGHV3-64	A0A075B6Q5	118 aa		11.95	□□□□□ -0.5
SHMT2-231	ENST00000557433		H3BT86	120 aa		11.95	□□□□□ -0.5
SHMT2-231	ENST00000557433	IFITM1	P13164	125 aa		11.95	□□□□□ -0.5
SHMT2-231	ENST00000557433	MIA	Q16674	131 aa		11.95	□□□□□ -0.5
SHMT2-231	ENST00000557433	SPX	Q9BT56	116 aa		11.95	□□□□□ -0.5
SHMT2-231	ENST00000557433		A8MTW9	85 aa		11.94	□□□□□ -0.5
SHMT2-231	ENST00000557433		H7C2G1	150 aa		11.94	□□□□□ -0.5
SHMT2-231	ENST00000557433	SNCG	O76070	127 aa		11.94	□□□□□ -0.5
SHMT2-231	ENST00000557433	NTN5	Q8WTR8	489 aa	Predicted RBP	11.94	□□□□□ -0.5
SHMT2-231	ENST00000557433	VSIG2	Q96IQ7	327 aa		11.94	□□□□□ -0.5
SHMT2-231	ENST00000557433	ANAPC13	Q9BS18	74 aa		11.94	□□□□□ -0.5
SHMT2-231	ENST00000557433	NDUFA12	Q9UI09	145 aa		11.94	□□□□□ -0.5
SHMT2-231	ENST00000557433	TRIAP1	O43715	76 aa		11.94	□□□□□ -0.5
SHMT2-231	ENST00000557433	MRPL23	Q16540	153 aa	Known RBP	11.94	□□□□□ -0.5
SHMT2-231	ENST00000557433	DNAJC30	Q96LL9	226 aa		11.94	□□□□□ -0.5
SHMT2-231	ENST00000557433	ABCA2	Q9BZC7	2435 aa		11.93	□□□□□ -0.5
SHMT2-231	ENST00000557433	ELANE	P08246	267 aa		11.93	□□□□□ -0.5
SHMT2-231	ENST00000557433	FAM104A	Q969W3	186 aa		11.93	□□□□□ -0.5
SHMT2-231	ENST00000557433	ICOS	Q9Y6W8	199 aa		11.93	□□□□□ -0.5
SHMT2-231	ENST00000557433		H3BMM0	161 aa		11.92	□□□□□ -0.5
SHMT2-231	ENST00000557433	ATP5J2	P56134	94 aa		11.92	□□□□□ -0.5
SHMT2-231	ENST00000557433	GAGE2B	Q13066	116 aa		11.92	□□□□□ -0.5
SHMT2-231	ENST00000557433	GAGE2E	Q4V326	116 aa		11.92	□□□□□ -0.5
SHMT2-231	ENST00000557433	UBE2W	Q96B02	151 aa		11.92	□□□□□ -0.5
SHMT2-231	ENST00000557433	GAGE2D	Q9UEU5	116 aa		11.92	□□□□□ -0.5
SHMT2-231	ENST00000557433	IGHV4-30-2	A0A087WSY4	118 aa		11.92	□□□□□ -0.5
SHMT2-231	ENST00000557433	TRAV8-4	A0A0B4J246	113 aa		11.92	□□□□□ -0.5
SHMT2-231	ENST00000557433	DSCR9	P59020	149 aa		11.92	□□□□□ -0.5
SHMT2-231	ENST00000557433	SPTBN1	Q01082	2364 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-231	ENST00000557433	PRSS2	P07478	247 aa		11.91	□□□□□ -0.5
SHMT2-231	ENST00000557433	SYNJ2BP	P57105	145 aa		11.9	□□□□□ -0.5
SHMT2-231	ENST00000557433	ZNF415	Q09FC8	603 aa		11.9	□□□□□ -0.5
SHMT2-231	ENST00000557433	TMEM95	Q3KNT9	176 aa		11.9	□□□□□ -0.5
SHMT2-231	ENST00000557433	LINC00467	Q9BRT7	94 aa		11.9	□□□□□ -0.5
SHMT2-231	ENST00000557433	UBE2D4	Q9Y2X8	147 aa		11.9	□□□□□ -0.5
SHMT2-231	ENST00000557433	TIRAP	P58753	221 aa		11.9	□□□□□ -0.51
SHMT2-231	ENST00000557433	C2orf82	Q6UX34	121 aa		11.9	□□□□□ -0.51
SHMT2-231	ENST00000557433	UBE2E2	Q96LR5	201 aa		11.9	□□□□□ -0.51
SHMT2-231	ENST00000557433	CHCHD7	Q9BUK0	85 aa		11.9	□□□□□ -0.51
SHMT2-231	ENST00000557433	SPTBN4	Q9H254	2564 aa		11.89	□□□□□ -0.51
SHMT2-231	ENST00000557433	FAM240A	A0A1B0GVK7	77 aa		11.89	□□□□□ -0.51
SHMT2-231	ENST00000557433	CLUHP3	Q96NS8	147 aa		11.89	□□□□□ -0.51
SHMT2-231	ENST00000557433	CEP295	Q9C0D2	2601 aa		11.89	□□□□□ -0.51
SHMT2-231	ENST00000557433	GAGE5	Q13069	117 aa		11.88	□□□□□ -0.51
SHMT2-231	ENST00000557433	GAGE6	Q13070	117 aa		11.88	□□□□□ -0.51
SHMT2-231	ENST00000557433	TMEM61	Q8N0U2	210 aa		11.88	□□□□□ -0.51
SHMT2-231	ENST00000557433	COPS9	Q8WXC6	57 aa		11.88	□□□□□ -0.51
SHMT2-231	ENST00000557433	IGLV5-45	A0A087WSX0	123 aa		11.88	□□□□□ -0.51
SHMT2-231	ENST00000557433	TRAV8-3	A0A0A6YYJ7	113 aa		11.88	□□□□□ -0.51
SHMT2-231	ENST00000557433		J3QLI3	93 aa		11.88	□□□□□ -0.51
SHMT2-231	ENST00000557433	GNLY	P22749	145 aa		11.88	□□□□□ -0.51

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