RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TNFRSF6BO95407 300 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 PPP1R17O96001 155 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 DEFB131AP59861 70 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 DEFB1P60022 68 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 ZC2HC1BQ5TFG8 222 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 DUX3Q96PT4 197 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 SMR3AQ99954 134 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 SONP18583 2426 aaKnown RBP9.38□□□□□ -0.91
SHMT2-229ENST00000557348 TRGV11A0A075B6L2 103 aa9.38□□□□□ -0.91
SHMT2-229ENST00000557348 A0A1W2PRX2 142 aa9.38□□□□□ -0.91
SHMT2-229ENST00000557348 FOXI1Q12951 378 aa9.38□□□□□ -0.91
SHMT2-229ENST00000557348 WFDC2Q14508 124 aa9.38□□□□□ -0.91
SHMT2-229ENST00000557348 AMTNQ6UX39 209 aa9.38□□□□□ -0.91
SHMT2-229ENST00000557348 RNF185Q96GF1 192 aa9.38□□□□□ -0.91
SHMT2-229ENST00000557348 TRBV7-3A0A075B6L6 115 aa9.37□□□□□ -0.91
SHMT2-229ENST00000557348 IGHV1OR15-1A0A075B7D0 117 aa9.37□□□□□ -0.91
SHMT2-229ENST00000557348 LAGE3Q14657 143 aa9.37□□□□□ -0.91
SHMT2-229ENST00000557348 PAPPA-AS1Q5QFB9 102 aa9.37□□□□□ -0.91
SHMT2-229ENST00000557348 SYT8Q8NBV8 401 aa9.37□□□□□ -0.91
SHMT2-229ENST00000557348 FAM110AQ9BQ89 295 aa9.37□□□□□ -0.91
SHMT2-229ENST00000557348 DPH3P1Q9H4G8 78 aa9.37□□□□□ -0.91
SHMT2-229ENST00000557348 MAP6D1Q9H9H5 199 aa9.37□□□□□ -0.91
SHMT2-229ENST00000557348 MSRB1Q9NZV6 116 aa9.37□□□□□ -0.91
SHMT2-229ENST00000557348 MXRA5Q9NR99 2828 aa9.37□□□□□ -0.91
SHMT2-229ENST00000557348 IGLV2-18A0A075B6J9 118 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 TRAV12-3A0A0B4J271 114 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 H3BMM0 161 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 H7C1H1 209 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 APOMO95445 188 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 RNASE3P12724 160 aaKnown RBP9.36□□□□□ -0.91
SHMT2-229ENST00000557348 CRYBA4P53673 196 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 ETDBQ3ZM63 59 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 C11orf44Q8N8P7 122 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 HIST1H4GQ99525 98 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 SELENOKQ9Y6D0 94 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 IGKV2D-26A0A0A0MRZ7 120 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 F8VRH5 84 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 CD7P09564 240 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 SPINK13Q1W4C9 94 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 ORMDL2Q53FV1 153 aa9.36□□□□□ -0.91
SHMT2-229ENST00000557348 NAA38Q9BRA0 125 aaKnown RBP9.36□□□□□ -0.91
SHMT2-229ENST00000557348 GEMIN7Q9H840 131 aaKnown RBP9.36□□□□□ -0.91
SHMT2-229ENST00000557348 ZNF256Q9Y2P7 627 aaPredicted RBP9.36□□□□□ -0.91
SHMT2-229ENST00000557348 MYMXA0A1B0GTQ4 84 aa9.35□□□□□ -0.91
SHMT2-229ENST00000557348 INAFM1C9JVW0 142 aa9.35□□□□□ -0.91
SHMT2-229ENST00000557348 M0R381 172 aa9.35□□□□□ -0.91
SHMT2-229ENST00000557348 CRLF1O75462 422 aa9.35□□□□□ -0.91
SHMT2-229ENST00000557348 CFAP126Q5VTH2 177 aa9.35□□□□□ -0.91
SHMT2-229ENST00000557348 PPDPFLQ8WWR9 84 aa9.35□□□□□ -0.91
SHMT2-229ENST00000557348 LINC00467Q9BRT7 94 aa9.35□□□□□ -0.91
SHMT2-229ENST00000557348 C2CD3Q4AC94 2353 aa9.34□□□□□ -0.91
SHMT2-229ENST00000557348 TSPAN13O95857 204 aa9.34□□□□□ -0.91
SHMT2-229ENST00000557348 IGKV3-20P01619 116 aa9.34□□□□□ -0.91
SHMT2-229ENST00000557348 Q6ZQT7 251 aa9.34□□□□□ -0.91
SHMT2-229ENST00000557348 C9orf85Q96MD7 179 aa9.34□□□□□ -0.91
SHMT2-229ENST00000557348 ACANP16112 2415 aa9.34□□□□□ -0.91
SHMT2-229ENST00000557348 KNCNA6PVL3 124 aa9.33□□□□□ -0.92
SHMT2-229ENST00000557348 GNRH2O43555 120 aa9.33□□□□□ -0.92
SHMT2-229ENST00000557348 PIK3CD-AS1Q5SR53 167 aa9.33□□□□□ -0.92
SHMT2-229ENST00000557348 SBSPONQ8IVN8 264 aa9.33□□□□□ -0.92
SHMT2-229ENST00000557348 C20orf78Q9BR46 151 aa9.33□□□□□ -0.92
SHMT2-229ENST00000557348 MTORP42345 2549 aa9.33□□□□□ -0.92
SHMT2-229ENST00000557348 IGHV3-16A0A0C4DH30 117 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 PRR31Q5SQ13 230 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 GTSCR1Q86UQ5 136 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 POM121L12Q8N7R1 296 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 LINC01600Q96MT4 127 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 ADARB2-AS1A8MUL3 147 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 INSP01308 110 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 IGLV1-51P01701 117 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 PF4P02776 101 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 UBE2D1P51668 147 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 TEN1Q86WV5 123 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 STHQ8IWL8 128 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 SPANXDQ9BXN6 97 aa9.32□□□□□ -0.92
SHMT2-229ENST00000557348 MRPL35Q9NZE8 188 aaKnown RBP9.32□□□□□ -0.92
SHMT2-229ENST00000557348 TRAV12-2A0A075B6T6 113 aa9.31□□□□□ -0.92
SHMT2-229ENST00000557348 SMKR1H3BMG3 65 aa9.31□□□□□ -0.92
SHMT2-229ENST00000557348 UBE2D3P61077 147 aa9.31□□□□□ -0.92
SHMT2-229ENST00000557348 UBE2D2P62837 147 aa9.31□□□□□ -0.92
SHMT2-229ENST00000557348 NSUN5P1Q3KNT7 163 aa9.31□□□□□ -0.92
SHMT2-229ENST00000557348 Q8N1Y9 231 aa9.31□□□□□ -0.92
SHMT2-229ENST00000557348 PTH2Q96A98 100 aa9.31□□□□□ -0.92
SHMT2-229ENST00000557348 C18orf15Q96N68 181 aa9.31□□□□□ -0.92
SHMT2-229ENST00000557348 ERG28Q9UKR5 140 aa9.31□□□□□ -0.92
SHMT2-229ENST00000557348 ZNF469Q96JG9 3925 aaPredicted RBP9.31□□□□□ -0.92
SHMT2-229ENST00000557348 SETD2Q9BYW2 2564 aaPredicted RBP9.3□□□□□ -0.92
SHMT2-229ENST00000557348 K7ERJ3 54 aa9.3□□□□□ -0.92
SHMT2-229ENST00000557348 SPINK8P0C7L1 97 aa9.3□□□□□ -0.92
SHMT2-229ENST00000557348 INSL3P51460 131 aa9.3□□□□□ -0.92
SHMT2-229ENST00000557348 ODF3L2Q3SX64 289 aa9.3□□□□□ -0.92
SHMT2-229ENST00000557348 TRAV26-1A0A087WT03 109 aa9.29□□□□□ -0.92
SHMT2-229ENST00000557348 RPL32P62910 135 aaKnown RBP9.29□□□□□ -0.92
SHMT2-229ENST00000557348 ZNF415Q09FC8 603 aa9.29□□□□□ -0.92
SHMT2-229ENST00000557348 Q6Q795 121 aa9.29□□□□□ -0.92
SHMT2-229ENST00000557348 SH2D6Q7Z4S9 175 aa9.29□□□□□ -0.92
SHMT2-229ENST00000557348 C14orf178Q8N769 122 aaPredicted RBP9.29□□□□□ -0.92
SHMT2-229ENST00000557348 NRACQ8N912 160 aa9.29□□□□□ -0.92
SHMT2-229ENST00000557348 CDIP1Q9H305 208 aa9.29□□□□□ -0.92
SHMT2-229ENST00000557348 MGPP08493 103 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms