RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 TRAV9-2A0A087WT02 112 aa7.82□□□□□ -1.16
CCDC88C-212ENST00000556767 A0A087WWC5 75 aa7.82□□□□□ -1.16
CCDC88C-212ENST00000556767 SMIM27A0A1W2PRY6 76 aa7.82□□□□□ -1.16
CCDC88C-212ENST00000556767 PPP1R2P9O14990 202 aa7.82□□□□□ -1.16
CCDC88C-212ENST00000556767 MT-ND4LP03901 98 aa7.82□□□□□ -1.16
CCDC88C-212ENST00000556767 DNAJC30Q96LL9 226 aa7.82□□□□□ -1.16
CCDC88C-212ENST00000556767 TRAV26-2A0A0B4J265 109 aa7.81□□□□□ -1.16
CCDC88C-212ENST00000556767 LINC00862A6NCI5 91 aa7.81□□□□□ -1.16
CCDC88C-212ENST00000556767 IGHV3-30P01768 117 aa7.81□□□□□ -1.16
CCDC88C-212ENST00000556767 IGHV3-33P01772 117 aa7.81□□□□□ -1.16
CCDC88C-212ENST00000556767 IGHV3-30-3P0DP02 117 aa7.81□□□□□ -1.16
CCDC88C-212ENST00000556767 IGHV3-30-5P0DP03 117 aa7.81□□□□□ -1.16
CCDC88C-212ENST00000556767 CAMPP49913 170 aa7.81□□□□□ -1.16
CCDC88C-212ENST00000556767 C6orf223Q8N319 242 aa7.81□□□□□ -1.16
CCDC88C-212ENST00000556767 ANAPC16Q96DE5 110 aa7.81□□□□□ -1.16
CCDC88C-212ENST00000556767 KRTAP1-5Q9BYS1 174 aa7.81□□□□□ -1.16
CCDC88C-212ENST00000556767 LYSTQ99698 3801 aa7.8□□□□□ -1.16
CCDC88C-212ENST00000556767 DNAH10OSP0CZ25 163 aa7.8□□□□□ -1.16
CCDC88C-212ENST00000556767 ADCYAP1P18509 176 aa7.8□□□□□ -1.16
CCDC88C-212ENST00000556767 MRPL54Q6P161 138 aaKnown RBP7.8□□□□□ -1.16
CCDC88C-212ENST00000556767 DAZ4Q86SG3 579 aaKnown RBP7.8□□□□□ -1.16
CCDC88C-212ENST00000556767 GATD1Q8NB37 220 aa7.8□□□□□ -1.16
CCDC88C-212ENST00000556767 TMEM191AQ9H0A3 160 aa7.8□□□□□ -1.16
CCDC88C-212ENST00000556767 NIT2Q9NQR4 276 aa7.8□□□□□ -1.16
CCDC88C-212ENST00000556767 DAZ3Q9NR90 486 aaKnown RBP7.8□□□□□ -1.16
CCDC88C-212ENST00000556767 VPS13DQ5THJ4 4388 aa7.8□□□□□ -1.16
CCDC88C-212ENST00000556767 RTL8CO15255 209 aa7.79□□□□□ -1.16
CCDC88C-212ENST00000556767 AMN1Q8IY45 258 aa7.79□□□□□ -1.16
CCDC88C-212ENST00000556767 SEC11CQ9BY50 192 aa7.79□□□□□ -1.16
CCDC88C-212ENST00000556767 URGCP-MRPS24S4R325 110 aa7.79□□□□□ -1.16
CCDC88C-212ENST00000556767 PRSS29PA6NIE9 313 aa7.78□□□□□ -1.16
CCDC88C-212ENST00000556767 S100A8P05109 93 aa7.78□□□□□ -1.16
CCDC88C-212ENST00000556767 TMEM97Q5BJF2 176 aa7.78□□□□□ -1.16
CCDC88C-212ENST00000556767 LINC01556Q5JQF7 62 aa7.78□□□□□ -1.16
CCDC88C-212ENST00000556767 KCNIP4Q6PIL6 250 aa7.78□□□□□ -1.16
CCDC88C-212ENST00000556767 LINC00336Q6ZUF6 198 aa7.78□□□□□ -1.16
CCDC88C-212ENST00000556767 C10orf126Q8N4M7 172 aa7.78□□□□□ -1.16
CCDC88C-212ENST00000556767 DEFB104AQ8WTQ1 72 aa7.78□□□□□ -1.16
CCDC88C-212ENST00000556767 RPL39LQ96EH5 51 aaKnown RBP7.78□□□□□ -1.16
CCDC88C-212ENST00000556767 TRBV6-8A0A0A6YYG3 113 aa7.77□□□□□ -1.17
CCDC88C-212ENST00000556767 A0A1B0GW15 77 aa7.77□□□□□ -1.17
CCDC88C-212ENST00000556767 TMEM262E9PQX1 116 aa7.77□□□□□ -1.17
CCDC88C-212ENST00000556767 RAB4AP20338 218 aa7.77□□□□□ -1.17
CCDC88C-212ENST00000556767 HBBP68871 147 aa7.77□□□□□ -1.17
CCDC88C-212ENST00000556767 CHCHD5Q9BSY4 110 aa7.77□□□□□ -1.17
CCDC88C-212ENST00000556767 A0A087WX48 190 aa7.76□□□□□ -1.17
CCDC88C-212ENST00000556767 K7EP13 123 aa7.76□□□□□ -1.17
CCDC88C-212ENST00000556767 NIT1Q86X76 327 aa7.76□□□□□ -1.17
CCDC88C-212ENST00000556767 Q8N3U1 123 aa7.76□□□□□ -1.17
CCDC88C-212ENST00000556767 FRZBQ92765 325 aa7.76□□□□□ -1.17
CCDC88C-212ENST00000556767 MRAP2Q96G30 205 aa7.76□□□□□ -1.17
CCDC88C-212ENST00000556767 RNF185Q96GF1 192 aa7.76□□□□□ -1.17
CCDC88C-212ENST00000556767 TRBV25-1A0A075B6N4 114 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 IGHV1-24A0A0C4DH33 117 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 SMKR1H3BMG3 65 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 GAS8-AS1O95177 125 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 NCR2O95944 276 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 BTF3P20290 206 aaKnown RBP7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 COTL1Q14019 142 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 FAM104BQ5XKR9 115 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 NTM-AS1Q6ZSK4 140 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 CTDSP1Q9GZU7 261 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 Q9HAA7 133 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 ST20Q9HBF5 79 aa7.75□□□□□ -1.17
CCDC88C-212ENST00000556767 SDHAF1A6NFY7 115 aa7.74□□□□□ -1.17
CCDC88C-212ENST00000556767 GAGE6Q13070 117 aa7.74□□□□□ -1.17
CCDC88C-212ENST00000556767 MRPL51Q4U2R6 128 aaKnown RBP7.74□□□□□ -1.17
CCDC88C-212ENST00000556767 ATP5L2Q7Z4Y8 100 aa7.74□□□□□ -1.17
CCDC88C-212ENST00000556767 NFE4Q86UQ8 179 aa7.74□□□□□ -1.17
CCDC88C-212ENST00000556767 KMT2AQ03164 3969 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 A0A1B0GXF2 115 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 C7orf77A4D0Y5 90 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 IBA57-AS1B1ANH7 110 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 PMCHP20382 165 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 CKS2P33552 79 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 RPS10P46783 165 aaKnown RBP7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 AMTP48728 403 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 PKIAP61925 76 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 TNP2Q05952 138 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 NDUFA5Q16718 116 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 C10orf91Q5T1B1 145 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 BTF3L4Q96K17 158 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 TMEM243Q9BU79 118 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 RPS10P5Q9NQ39 176 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 KLK12Q9UKR0 248 aa7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 CARHSP1Q9Y2V2 147 aaKnown RBP7.73□□□□□ -1.17
CCDC88C-212ENST00000556767 TRBV6-5A0A0K0K1A5 114 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 I3L3M4 83 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 UBE2L6O14933 153 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 PPP1R17O96001 155 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 APOC3P02656 99 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 S100PP25815 95 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 ELOBQ15370 118 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 IQCJQ1A5X6 159 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 ATRAIDQ6UW56 229 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 CLRN3Q8NCR9 226 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 IMMP2LQ96T52 175 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 CHCHD7Q9BUK0 85 aa7.72□□□□□ -1.17
CCDC88C-212ENST00000556767 PSCAO43653 123 aa7.71□□□□□ -1.18
CCDC88C-212ENST00000556767 APCSP02743 223 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms