RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ATP6V0E2Q8NHE4 81 aa9.73□□□□□ -0.85
VIPAS39-208ENST00000556412 TNFRSF18Q9Y5U5 241 aa9.73□□□□□ -0.85
VIPAS39-208ENST00000556412 TRBV7-3A0A075B6L6 115 aa9.72□□□□□ -0.85
VIPAS39-208ENST00000556412 SMKR1H3BMG3 65 aa9.72□□□□□ -0.85
VIPAS39-208ENST00000556412 FAM104BQ5XKR9 115 aa9.72□□□□□ -0.85
VIPAS39-208ENST00000556412 CBLN2Q8IUK8 224 aa9.72□□□□□ -0.85
VIPAS39-208ENST00000556412 TGIF2-C20orf24A0A0A6YYL0 155 aa9.72□□□□□ -0.85
VIPAS39-208ENST00000556412 ESRGQ1W209 222 aa9.72□□□□□ -0.85
VIPAS39-208ENST00000556412 SH2D6Q7Z4S9 175 aa9.72□□□□□ -0.85
VIPAS39-208ENST00000556412 RPL39LQ96EH5 51 aaKnown RBP9.72□□□□□ -0.85
VIPAS39-208ENST00000556412 CSMD3Q7Z407 3707 aa9.72□□□□□ -0.85
VIPAS39-208ENST00000556412 IGHV3-38A0A0C4DH36 116 aa9.71□□□□□ -0.85
VIPAS39-208ENST00000556412 GAS8-AS1O95177 125 aa9.71□□□□□ -0.85
VIPAS39-208ENST00000556412 MRPL51Q4U2R6 128 aaKnown RBP9.71□□□□□ -0.85
VIPAS39-208ENST00000556412 MRAP2Q96G30 205 aa9.71□□□□□ -0.85
VIPAS39-208ENST00000556412 NIT2Q9NQR4 276 aa9.71□□□□□ -0.85
VIPAS39-208ENST00000556412 CKS2P33552 79 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 ELOBQ15370 118 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 OR10J3Q5JRS4 329 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 LYPD5Q6UWN5 251 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 LINC00476Q8WZB0 136 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 SMCO4Q9NRQ5 59 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 LINC00588Q9Y4M8 146 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 LINC00694P0DN24 101 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 UBE2D3P61077 147 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 UBE2D2P62837 147 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 DNAJC30Q96LL9 226 aa9.7□□□□□ -0.86
VIPAS39-208ENST00000556412 RPS10P46783 165 aaKnown RBP9.69□□□□□ -0.86
VIPAS39-208ENST00000556412 LGALS9CQ6DKI2 356 aa9.69□□□□□ -0.86
VIPAS39-208ENST00000556412 TMEM136Q6ZRR5 245 aa9.69□□□□□ -0.86
VIPAS39-208ENST00000556412 DEFB104AQ8WTQ1 72 aa9.69□□□□□ -0.86
VIPAS39-208ENST00000556412 D6R8Y8 96 aa9.68□□□□□ -0.86
VIPAS39-208ENST00000556412 FRZBQ92765 325 aa9.68□□□□□ -0.86
VIPAS39-208ENST00000556412 GTSF1LQ9H1H1 148 aa9.68□□□□□ -0.86
VIPAS39-208ENST00000556412 TENM2Q9NT68 2774 aa9.67□□□□□ -0.86
VIPAS39-208ENST00000556412 NACAE9PAV3 2078 aa9.67□□□□□ -0.86
VIPAS39-208ENST00000556412 SCO1O75880 301 aa9.67□□□□□ -0.86
VIPAS39-208ENST00000556412 DAZ4Q86SG3 579 aaKnown RBP9.67□□□□□ -0.86
VIPAS39-208ENST00000556412 ST20Q9HBF5 79 aa9.67□□□□□ -0.86
VIPAS39-208ENST00000556412 DAZ3Q9NR90 486 aaKnown RBP9.67□□□□□ -0.86
VIPAS39-208ENST00000556412 LOC105371267A0A1B0GV96 52 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 HLA-DQA1P01909 254 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 APCSP02743 223 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 ORMDL3Q8N138 153 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 MRPS16Q9Y3D3 137 aaKnown RBP9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 TRBV24-1A0A075B6N3 115 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 LCE6AA0A183 80 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 SDHAF1A6NFY7 115 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 PPP1R17O96001 155 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 KIAA1644Q3SXP7 199 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 COX19Q49B96 90 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 GNB1LQ9BYB4 327 aa9.66□□□□□ -0.86
VIPAS39-208ENST00000556412 PPBPP02775 128 aa9.65□□□□□ -0.86
VIPAS39-208ENST00000556412 NRACQ8N912 160 aa9.65□□□□□ -0.86
VIPAS39-208ENST00000556412 PRELID3AQ96N28 172 aa9.65□□□□□ -0.86
VIPAS39-208ENST00000556412 DYNC2H1Q8NCM8 4307 aaKnown RBP9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 IGLV2-18A0A075B6J9 118 aa9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 TRAV8-6A0A0B4J262 113 aa9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 TNFRSF6BO95407 300 aa9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 NPYP01303 97 aa9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 TIRAPP58753 221 aa9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 PLECQ15149 4684 aaKnown RBP9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 LELP1Q5T871 98 aa9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 WFDC10BQ8IUB3 73 aa9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 YPEL4Q96NS1 127 aa9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 MRPL18Q9H0U6 180 aaKnown RBP9.64□□□□□ -0.87
VIPAS39-208ENST00000556412 TRBV6-5A0A0K0K1A5 114 aa9.63□□□□□ -0.87
VIPAS39-208ENST00000556412 MT-ND6P03923 174 aa9.63□□□□□ -0.87
VIPAS39-208ENST00000556412 PMCHP20382 165 aa9.63□□□□□ -0.87
VIPAS39-208ENST00000556412 SUMO2P61956 95 aaKnown RBP9.63□□□□□ -0.87
VIPAS39-208ENST00000556412 FABP9Q0Z7S8 132 aa9.63□□□□□ -0.87
VIPAS39-208ENST00000556412 TRAPPC1Q9Y5R8 145 aa9.63□□□□□ -0.87
VIPAS39-208ENST00000556412 COTL1Q14019 142 aa9.63□□□□□ -0.87
VIPAS39-208ENST00000556412 TMEM70Q9BUB7 260 aa9.63□□□□□ -0.87
VIPAS39-208ENST00000556412 Q9H8V8 135 aa9.63□□□□□ -0.87
VIPAS39-208ENST00000556412 TRBV6-8A0A0A6YYG3 113 aa9.62□□□□□ -0.87
VIPAS39-208ENST00000556412 UPK3BQ9BT76 320 aa9.62□□□□□ -0.87
VIPAS39-208ENST00000556412 I3L3M4 83 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 SIVA1O15304 175 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 TMEM97Q5BJF2 176 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 NTM-AS1Q6ZSK4 140 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 CHCHD5Q9BSY4 110 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 TRBV25-1A0A075B6N4 114 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 LOC389332A0A1B0GUA5 103 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 M0R2N4 97 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 VCYO14598 125 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 AMTP48728 403 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 C20orf78Q9BR46 151 aa9.61□□□□□ -0.87
VIPAS39-208ENST00000556412 IGHV1-24A0A0C4DH33 117 aa9.6□□□□□ -0.87
VIPAS39-208ENST00000556412 TMEM262E9PQX1 116 aa9.6□□□□□ -0.87
VIPAS39-208ENST00000556412 FCER1GP30273 86 aa9.6□□□□□ -0.87
VIPAS39-208ENST00000556412 POLR2KP53803 58 aaKnown RBP9.6□□□□□ -0.87
VIPAS39-208ENST00000556412 TRBV27A0A0K0K1C4 114 aa9.59□□□□□ -0.87
VIPAS39-208ENST00000556412 PHOX2AO14813 284 aa9.59□□□□□ -0.87
VIPAS39-208ENST00000556412 KIR2DL4Q99706 377 aa9.59□□□□□ -0.87
VIPAS39-208ENST00000556412 SMIM2Q9BVW6 85 aa9.59□□□□□ -0.87
VIPAS39-208ENST00000556412 MAP1LC3AQ9H492 121 aa9.59□□□□□ -0.87
VIPAS39-208ENST00000556412 LAMTOR2Q9Y2Q5 125 aa9.59□□□□□ -0.87
VIPAS39-208ENST00000556412 TSHBP01222 138 aa9.59□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms