RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 TMEM14BQ9NUH8 114 aa0.03□□□□□ -2.4
SCFD1-216ENST00000555550 NOP16Q9Y3C1 178 aaKnown RBP0.03□□□□□ -2.4
SCFD1-216ENST00000555550 NRXN2Q9P2S2 1712 aa0.03□□□□□ -2.4
SCFD1-216ENST00000555550 CSMD3Q7Z407 3707 aa0.03□□□□□ -2.41
SCFD1-216ENST00000555550 CELSR1Q9NYQ6 3014 aa0.03□□□□□ -2.41
SCFD1-216ENST00000555550 IGSF10Q6WRI0 2623 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 LAMC1P11047 1609 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 SHROOM2Q13796 1616 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 F5P12259 2224 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 K7EP13 123 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 SMIM24O75264 130 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 UBE2D1P51668 147 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 POLR2JP52435 117 aaKnown RBP0.02□□□□□ -2.41
SCFD1-216ENST00000555550 LSM3P62310 102 aaKnown RBP0.02□□□□□ -2.41
SCFD1-216ENST00000555550 IQCJQ1A5X6 159 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 SPINK13Q1W4C9 94 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 VSTM2AQ8TAG5 236 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 C10orf82Q8WW14 230 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 MAGOHBQ96A72 148 aaKnown RBP0.02□□□□□ -2.41
SCFD1-216ENST00000555550 SMIM3Q9BZL3 60 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 CELSR2Q9HCU4 2923 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 ZMYM4Q5VZL5 1548 aa0.02□□□□□ -2.41
SCFD1-216ENST00000555550 RBBP6Q7Z6E9 1792 aaKnown RBP0.01□□□□□ -2.41
SCFD1-216ENST00000555550 FAM208BQ5VWN6 2430 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 LOC100130705A0A1B0GUX0 176 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 G3V318 75 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 CCDC179H3BU77 68 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 J3QLW9 94 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 SPINK7P58062 85 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 C9orf116Q5BN46 136 aaPredicted RBP0.01□□□□□ -2.41
SCFD1-216ENST00000555550 CTAGE3PQ8IX95 158 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 LSM10Q969L4 123 aaKnown RBP0.01□□□□□ -2.41
SCFD1-216ENST00000555550 CALML5Q9NZT1 146 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 FLNCQ14315 2725 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 IBTKQ9P2D0 1353 aaPredicted RBP0.01□□□□□ -2.41
SCFD1-216ENST00000555550 SOGA1O94964 1423 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 GOLGA3Q08378 1498 aa0.01□□□□□ -2.41
SCFD1-216ENST00000555550 CDK13Q14004 1512 aaKnown RBP0.01□□□□□ -2.41
SCFD1-216ENST00000555550 MAP1BP46821 2468 aaKnown RBP0.01□□□□□ -2.41
SCFD1-216ENST00000555550 TRAV12-2A0A075B6T6 113 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 TRAV12-3A0A0B4J271 114 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 TRAV17A0A0B4J275 112 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 YPEL1O60688 119 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 PIRTP0C851 137 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 S100A12P80511 92 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 CACNA1EQ15878 2313 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 SLC48A1Q6P1K1 146 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 PXDNQ92626 1479 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 PROK2Q9HC23 129 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 ARFGEF1Q9Y6D6 1849 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 LAMC3Q9Y6N6 1575 aa0□□□□□ -2.41
SCFD1-216ENST00000555550 CFAP46Q8IYW2 2715 aa-0□□□□□ -2.41
SCFD1-216ENST00000555550 KALRNO60229 2985 aa-0.01□□□□□ -2.41
SCFD1-216ENST00000555550 RBP4P02753 201 aa-0.01□□□□□ -2.41
SCFD1-216ENST00000555550 NCS1P62166 190 aa-0.01□□□□□ -2.41
SCFD1-216ENST00000555550 C20orf197Q8N268 126 aa-0.01□□□□□ -2.41
SCFD1-216ENST00000555550 MMGT1Q8N4V1 131 aa-0.01□□□□□ -2.41
SCFD1-216ENST00000555550 TMEM141Q96I45 108 aa-0.01□□□□□ -2.41
SCFD1-216ENST00000555550 SAR1AQ9NR31 198 aa-0.01□□□□□ -2.41
SCFD1-216ENST00000555550 COPZ2Q9P299 210 aa-0.01□□□□□ -2.41
SCFD1-216ENST00000555550 TPRP12270 2363 aaKnown RBP-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 CADP27708 2225 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 IFT140Q96RY7 1462 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 HRNRQ86YZ3 2850 aaPredicted RBP-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 SPAARA0A1B0GVQ0 90 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 FXYD1O00168 92 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 HMGN1P05114 100 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 SMCO1Q147U7 214 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 SPCS2Q15005 226 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 Q5VV11 94 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 UNQ5815/PRO19632Q6UWF5 114 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 Q8N8P6 123 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 COX7B2Q8TF08 81 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 WFDC6Q9BQY6 131 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 TMEM191AQ9H0A3 160 aa-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 UTP20O75691 2785 aaKnown RBP-0.02□□□□□ -2.41
SCFD1-216ENST00000555550 CASKIN1Q8WXD9 1431 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 KMT2AQ03164 3969 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 DNHD1Q96M86 4753 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 M0R2Z0 102 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 ARPC4P59998 168 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 UBE2G1P62253 170 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 BTG2P78543 158 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 SSBP1Q04837 148 aaKnown RBP-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 SPANXN1Q5VSR9 72 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 SCIMPQ6UWF3 145 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 TSTD1Q8NFU3 115 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 LINC00470Q9BZP3 86 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 AGPAT4-IT1Q9H0P7 198 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 BET1LQ9NYM9 111 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 DOCK1Q14185 1865 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 CFTRP13569 1480 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 ZNF518AQ6AHZ1 1483 aa-0.03□□□□□ -2.41
SCFD1-216ENST00000555550 CHD9Q3L8U1 2897 aa-0.04□□□□□ -2.42
SCFD1-216ENST00000555550 ZFHX3Q15911 3703 aa-0.04□□□□□ -2.42
SCFD1-216ENST00000555550 LRRC37A3O60309 1634 aa-0.04□□□□□ -2.42
SCFD1-216ENST00000555550 COPZ1P61923 177 aa-0.04□□□□□ -2.42
SCFD1-216ENST00000555550 VMO1Q7Z5L0 202 aa-0.04□□□□□ -2.42
SCFD1-216ENST00000555550 SNRNP25Q9BV90 132 aaKnown RBP-0.04□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms