RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 NEGR1Q7Z3B1 354 aa8.48□□□□□ -1.05
SHMT2-209ENST00000553949 SH2D6Q7Z4S9 175 aa8.48□□□□□ -1.05
SHMT2-209ENST00000553949 ZNRF2Q8NHG8 242 aa8.48□□□□□ -1.05
SHMT2-209ENST00000553949 FRZBQ92765 325 aa8.48□□□□□ -1.05
SHMT2-209ENST00000553949 RPL36ALQ969Q0 106 aaKnown RBP8.48□□□□□ -1.05
SHMT2-209ENST00000553949 MRAP2Q96G30 205 aa8.48□□□□□ -1.05
SHMT2-209ENST00000553949 ALMS1Q8TCU4 4167 aa8.48□□□□□ -1.05
SHMT2-209ENST00000553949 SACSQ9NZJ4 4579 aa8.47□□□□□ -1.05
SHMT2-209ENST00000553949 TRBV7-3A0A075B6L6 115 aa8.47□□□□□ -1.05
SHMT2-209ENST00000553949 ELOBQ15370 118 aa8.47□□□□□ -1.05
SHMT2-209ENST00000553949 MRPL51Q4U2R6 128 aaKnown RBP8.47□□□□□ -1.05
SHMT2-209ENST00000553949 DNAJC30Q96LL9 226 aa8.47□□□□□ -1.05
SHMT2-209ENST00000553949 SMCO4Q9NRQ5 59 aa8.47□□□□□ -1.05
SHMT2-209ENST00000553949 TENM2Q9NT68 2774 aa8.46□□□□□ -1.05
SHMT2-209ENST00000553949 TGIF2-C20orf24A0A0A6YYL0 155 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 GAS8-AS1O95177 125 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 CCL18P55774 89 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 UBE2D3P61077 147 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 UBE2D2P62837 147 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 ESRGQ1W209 222 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 LYPD5Q6UWN5 251 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 CBLN2Q8IUK8 224 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 ATP6V0E2Q8NHE4 81 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 RPL39LQ96EH5 51 aaKnown RBP8.46□□□□□ -1.06
SHMT2-209ENST00000553949 NIT2Q9NQR4 276 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 TNFRSF18Q9Y5U5 241 aa8.46□□□□□ -1.06
SHMT2-209ENST00000553949 TRBV24-1A0A075B6N3 115 aa8.45□□□□□ -1.06
SHMT2-209ENST00000553949 SMKR1H3BMG3 65 aa8.45□□□□□ -1.06
SHMT2-209ENST00000553949 ATP6V1G1O75348 118 aa8.45□□□□□ -1.06
SHMT2-209ENST00000553949 NCR2O95944 276 aa8.45□□□□□ -1.06
SHMT2-209ENST00000553949 LGALS9CQ6DKI2 356 aa8.45□□□□□ -1.06
SHMT2-209ENST00000553949 TMEM136Q6ZRR5 245 aa8.45□□□□□ -1.06
SHMT2-209ENST00000553949 YPEL4Q96NS1 127 aa8.45□□□□□ -1.06
SHMT2-209ENST00000553949 CKS2P33552 79 aa8.44□□□□□ -1.06
SHMT2-209ENST00000553949 RPS10P46783 165 aaKnown RBP8.44□□□□□ -1.06
SHMT2-209ENST00000553949 TIRAPP58753 221 aa8.44□□□□□ -1.06
SHMT2-209ENST00000553949 COX19Q49B96 90 aa8.44□□□□□ -1.06
SHMT2-209ENST00000553949 OR10J3Q5JRS4 329 aa8.44□□□□□ -1.06
SHMT2-209ENST00000553949 UBE2DNLQ8IWF7 75 aa8.44□□□□□ -1.06
SHMT2-209ENST00000553949 LINC00476Q8WZB0 136 aa8.44□□□□□ -1.06
SHMT2-209ENST00000553949 LYSTQ99698 3801 aa8.44□□□□□ -1.06
SHMT2-209ENST00000553949 GNB1LQ9BYB4 327 aa8.44□□□□□ -1.06
SHMT2-209ENST00000553949 GTSF1LQ9H1H1 148 aa8.44□□□□□ -1.06
SHMT2-209ENST00000553949 LINC00588Q9Y4M8 146 aa8.44□□□□□ -1.06
SHMT2-209ENST00000553949 IGHV3-38A0A0C4DH36 116 aa8.43□□□□□ -1.06
SHMT2-209ENST00000553949 TRBV6-5A0A0K0K1A5 114 aa8.43□□□□□ -1.06
SHMT2-209ENST00000553949 D6R8Y8 96 aa8.43□□□□□ -1.06
SHMT2-209ENST00000553949 HLA-DQA1P01909 254 aa8.43□□□□□ -1.06
SHMT2-209ENST00000553949 S100A1P23297 94 aa8.43□□□□□ -1.06
SHMT2-209ENST00000553949 DAZ4Q86SG3 579 aaKnown RBP8.43□□□□□ -1.06
SHMT2-209ENST00000553949 NRACQ8N912 160 aa8.43□□□□□ -1.06
SHMT2-209ENST00000553949 DAZ3Q9NR90 486 aaKnown RBP8.43□□□□□ -1.06
SHMT2-209ENST00000553949 KMT2CQ8NEZ4 4911 aaKnown RBP8.42□□□□□ -1.06
SHMT2-209ENST00000553949 LY6G6CO95867 125 aa8.42□□□□□ -1.06
SHMT2-209ENST00000553949 PPP1R17O96001 155 aa8.42□□□□□ -1.06
SHMT2-209ENST00000553949 APCSP02743 223 aa8.42□□□□□ -1.06
SHMT2-209ENST00000553949 PPBPP02775 128 aa8.42□□□□□ -1.06
SHMT2-209ENST00000553949 ORMDL3Q8N138 153 aa8.42□□□□□ -1.06
SHMT2-209ENST00000553949 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.42□□□□□ -1.06
SHMT2-209ENST00000553949 ST20Q9HBF5 79 aa8.42□□□□□ -1.06
SHMT2-209ENST00000553949 MRPS16Q9Y3D3 137 aaKnown RBP8.42□□□□□ -1.06
SHMT2-209ENST00000553949 SCO1O75880 301 aa8.41□□□□□ -1.06
SHMT2-209ENST00000553949 MT-ND6P03923 174 aa8.41□□□□□ -1.06
SHMT2-209ENST00000553949 UPK3BQ9BT76 320 aa8.41□□□□□ -1.06
SHMT2-209ENST00000553949 LCE6AA0A183 80 aa8.4□□□□□ -1.06
SHMT2-209ENST00000553949 SDHAF1A6NFY7 115 aa8.4□□□□□ -1.06
SHMT2-209ENST00000553949 TNFRSF6BO95407 300 aa8.4□□□□□ -1.06
SHMT2-209ENST00000553949 NPYP01303 97 aa8.4□□□□□ -1.06
SHMT2-209ENST00000553949 SUMO2P61956 95 aaKnown RBP8.4□□□□□ -1.06
SHMT2-209ENST00000553949 LELP1Q5T871 98 aa8.4□□□□□ -1.06
SHMT2-209ENST00000553949 PRELID3AQ96N28 172 aa8.4□□□□□ -1.06
SHMT2-209ENST00000553949 C20orf78Q9BR46 151 aa8.4□□□□□ -1.06
SHMT2-209ENST00000553949 TMEM70Q9BUB7 260 aa8.4□□□□□ -1.06
SHMT2-209ENST00000553949 MRPL18Q9H0U6 180 aaKnown RBP8.4□□□□□ -1.06
SHMT2-209ENST00000553949 TRBV6-8A0A0A6YYG3 113 aa8.39□□□□□ -1.07
SHMT2-209ENST00000553949 PHOX2AO14813 284 aa8.39□□□□□ -1.07
SHMT2-209ENST00000553949 POLR2KP53803 58 aaKnown RBP8.39□□□□□ -1.07
SHMT2-209ENST00000553949 FABP9Q0Z7S8 132 aa8.39□□□□□ -1.07
SHMT2-209ENST00000553949 KIAA1644Q3SXP7 199 aa8.39□□□□□ -1.07
SHMT2-209ENST00000553949 TMEM97Q5BJF2 176 aa8.39□□□□□ -1.07
SHMT2-209ENST00000553949 TRAPPC1Q9Y5R8 145 aa8.39□□□□□ -1.07
SHMT2-209ENST00000553949 HYDINQ4G0P3 5121 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 TRAV8-6A0A0B4J262 113 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 TRBV27A0A0K0K1C4 114 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 I3L3M4 83 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 VCYO14598 125 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 PMCHP20382 165 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 NTM-AS1Q6ZSK4 140 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 DEFB104AQ8WTQ1 72 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 Q9H8V8 135 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 LAMTOR2Q9Y2Q5 125 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 RYR2Q92736 4967 aa8.38□□□□□ -1.07
SHMT2-209ENST00000553949 DNAH6Q9C0G6 4158 aa8.37□□□□□ -1.07
SHMT2-209ENST00000553949 COLCA2A8K830 154 aa8.37□□□□□ -1.07
SHMT2-209ENST00000553949 COTL1Q14019 142 aa8.37□□□□□ -1.07
SHMT2-209ENST00000553949 WFDC10BQ8IUB3 73 aa8.37□□□□□ -1.07
SHMT2-209ENST00000553949 TRBV25-1A0A075B6N4 114 aa8.36□□□□□ -1.07
SHMT2-209ENST00000553949 IGHV1-24A0A0C4DH33 117 aa8.36□□□□□ -1.07
SHMT2-209ENST00000553949 SIVA1O15304 175 aa8.36□□□□□ -1.07
SHMT2-209ENST00000553949 RPL32P62910 135 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms