RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 SSTP61278 116 aa8.39□□□□□ -1.07
LINC00643-202ENST00000553426 Q6ZSA8 131 aa8.39□□□□□ -1.07
LINC00643-202ENST00000553426 C15orf54Q8N8G6 183 aa8.39□□□□□ -1.07
LINC00643-202ENST00000553426 DAZAP1Q96EP5 407 aaKnown RBP8.39□□□□□ -1.07
LINC00643-202ENST00000553426 AP1S3Q96PC3 154 aa8.39□□□□□ -1.07
LINC00643-202ENST00000553426 MUC21A0A0G2JKD1 596 aa8.38□□□□□ -1.07
LINC00643-202ENST00000553426 MUC21A0A140T8X8 626 aa8.38□□□□□ -1.07
LINC00643-202ENST00000553426 ANGP03950 147 aaKnown RBP8.38□□□□□ -1.07
LINC00643-202ENST00000553426 RAB5CP51148 216 aa8.38□□□□□ -1.07
LINC00643-202ENST00000553426 EIF5AL1Q6IS14 154 aaKnown RBP8.38□□□□□ -1.07
LINC00643-202ENST00000553426 ATRAIDQ6UW56 229 aa8.38□□□□□ -1.07
LINC00643-202ENST00000553426 LINC00528Q8N1L1 170 aa8.38□□□□□ -1.07
LINC00643-202ENST00000553426 DNAJC30Q96LL9 226 aa8.38□□□□□ -1.07
LINC00643-202ENST00000553426 FLG2Q5D862 2391 aaPredicted RBP8.37□□□□□ -1.07
LINC00643-202ENST00000553426 H7C1H1 209 aa8.37□□□□□ -1.07
LINC00643-202ENST00000553426 J3QL48 77 aa8.37□□□□□ -1.07
LINC00643-202ENST00000553426 GNG13Q9P2W3 67 aa8.37□□□□□ -1.07
LINC00643-202ENST00000553426 XKRY2A2RUG3 117 aa8.36□□□□□ -1.07
LINC00643-202ENST00000553426 RPS20P60866 119 aaKnown RBP8.36□□□□□ -1.07
LINC00643-202ENST00000553426 MIAQ16674 131 aa8.36□□□□□ -1.07
LINC00643-202ENST00000553426 LINC01620Q4KN68 170 aa8.36□□□□□ -1.07
LINC00643-202ENST00000553426 MPV17L2Q567V2 206 aa8.36□□□□□ -1.07
LINC00643-202ENST00000553426 TPPP3Q9BW30 176 aa8.36□□□□□ -1.07
LINC00643-202ENST00000553426 TRBV25-1A0A075B6N4 114 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 TRAV1-1A0A0B4J248 108 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 HLA-DQA1P01909 254 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 GNG4P50150 75 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 ENHOQ6UWT2 76 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 SCXQ7RTU7 201 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 FER1L6-AS1Q8NA97 138 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 DEFB104AQ8WTQ1 72 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 C11orf52Q96A22 123 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 DERL1Q9BUN8 251 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 CHAC1Q9BUX1 264 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 VAX2Q9UIW0 290 aa8.35□□□□□ -1.07
LINC00643-202ENST00000553426 IFNA1P01562 189 aa8.34□□□□□ -1.07
LINC00643-202ENST00000553426 MGPP08493 103 aa8.34□□□□□ -1.07
LINC00643-202ENST00000553426 CACNG7P62955 275 aa8.34□□□□□ -1.07
LINC00643-202ENST00000553426 CENPWQ5EE01 88 aa8.34□□□□□ -1.07
LINC00643-202ENST00000553426 OR2D3Q8NGH3 330 aa8.34□□□□□ -1.07
LINC00643-202ENST00000553426 SMIM12Q96EX1 92 aa8.34□□□□□ -1.07
LINC00643-202ENST00000553426 BIN3Q9NQY0 253 aa8.34□□□□□ -1.07
LINC00643-202ENST00000553426 F2Z2F3 143 aa8.33□□□□□ -1.08
LINC00643-202ENST00000553426 PDE6DO43924 150 aa8.33□□□□□ -1.08
LINC00643-202ENST00000553426 P01737 135 aa8.33□□□□□ -1.08
LINC00643-202ENST00000553426 CCL20P78556 96 aa8.33□□□□□ -1.08
LINC00643-202ENST00000553426 GAGE6Q13070 117 aa8.33□□□□□ -1.08
LINC00643-202ENST00000553426 KIF25-AS1Q9Y6Z4 181 aa8.33□□□□□ -1.08
LINC00643-202ENST00000553426 IGHV1-24A0A0C4DH33 117 aa8.32□□□□□ -1.08
LINC00643-202ENST00000553426 TRGC1P0CF51 173 aa8.32□□□□□ -1.08
LINC00643-202ENST00000553426 GZMBP10144 247 aa8.32□□□□□ -1.08
LINC00643-202ENST00000553426 RBX1P62877 108 aa8.32□□□□□ -1.08
LINC00643-202ENST00000553426 MEF2BQ02080 365 aaPredicted RBP8.32□□□□□ -1.08
LINC00643-202ENST00000553426 LINC00269Q8N2A0 174 aa8.32□□□□□ -1.08
LINC00643-202ENST00000553426 MED9Q9NWA0 146 aa8.32□□□□□ -1.08
LINC00643-202ENST00000553426 USP17L23D6RBM5 183 aa8.31□□□□□ -1.08
LINC00643-202ENST00000553426 M0QY20 66 aa8.31□□□□□ -1.08
LINC00643-202ENST00000553426 IGLC6P0CF74 106 aa8.31□□□□□ -1.08
LINC00643-202ENST00000553426 SULT1A2P50226 295 aa8.31□□□□□ -1.08
LINC00643-202ENST00000553426 IQCJQ1A5X6 159 aa8.31□□□□□ -1.08
LINC00643-202ENST00000553426 NTM-AS1Q6ZSK4 140 aa8.31□□□□□ -1.08
LINC00643-202ENST00000553426 CIRBP-AS1Q8TBR5 109 aa8.31□□□□□ -1.08
LINC00643-202ENST00000553426 RAB19A4D1S5 217 aa8.3□□□□□ -1.08
LINC00643-202ENST00000553426 TAGLN2P37802 199 aaKnown RBP8.3□□□□□ -1.08
LINC00643-202ENST00000553426 SUMO4Q6EEV6 95 aa8.3□□□□□ -1.08
LINC00643-202ENST00000553426 DGAT2L7PQ6IED9 249 aa8.3□□□□□ -1.08
LINC00643-202ENST00000553426 CLPSL2Q6UWE3 100 aa8.3□□□□□ -1.08
LINC00643-202ENST00000553426 PRR34Q9NV39 138 aa8.3□□□□□ -1.08
LINC00643-202ENST00000553426 C19orf71A6NCJ1 209 aa8.29□□□□□ -1.08
LINC00643-202ENST00000553426 UBE2L6O14933 153 aa8.29□□□□□ -1.08
LINC00643-202ENST00000553426 IGLV2-8P01709 118 aa8.29□□□□□ -1.08
LINC00643-202ENST00000553426 NKX2-5P52952 324 aaPredicted RBP8.29□□□□□ -1.08
LINC00643-202ENST00000553426 RASL11AQ6T310 242 aa8.29□□□□□ -1.08
LINC00643-202ENST00000553426 CLRN3Q8NCR9 226 aa8.29□□□□□ -1.08
LINC00643-202ENST00000553426 TMEM243Q9BU79 118 aa8.29□□□□□ -1.08
LINC00643-202ENST00000553426 DPH3P1Q9H4G8 78 aa8.29□□□□□ -1.08
LINC00643-202ENST00000553426 TRAV8-4A0A0B4J246 113 aa8.28□□□□□ -1.08
LINC00643-202ENST00000553426 KRTAP29-1A8MX34 341 aaPredicted RBP8.28□□□□□ -1.08
LINC00643-202ENST00000553426 PRSS1P07477 247 aa8.28□□□□□ -1.08
LINC00643-202ENST00000553426 BCL2P10415 239 aa8.28□□□□□ -1.08
LINC00643-202ENST00000553426 REG3AQ06141 175 aa8.28□□□□□ -1.08
LINC00643-202ENST00000553426 LYZL1Q6UWQ5 148 aa8.28□□□□□ -1.08
LINC00643-202ENST00000553426 NIT2Q9NQR4 276 aa8.28□□□□□ -1.08
LINC00643-202ENST00000553426 IGLV10-54A0A075B6I4 117 aa8.27□□□□□ -1.09
LINC00643-202ENST00000553426 A0A1B0GUV1 79 aa8.27□□□□□ -1.09
LINC00643-202ENST00000553426 NTF3P20783 257 aa8.27□□□□□ -1.09
LINC00643-202ENST00000553426 WDR73Q6P4I2 378 aa8.27□□□□□ -1.09
LINC00643-202ENST00000553426 SLC51BQ86UW2 128 aa8.27□□□□□ -1.09
LINC00643-202ENST00000553426 C9orf62Q8N4C0 152 aa8.27□□□□□ -1.09
LINC00643-202ENST00000553426 PGLYRP4Q96LB8 373 aa8.27□□□□□ -1.09
LINC00643-202ENST00000553426 LRP1Q07954 4544 aaKnown RBP8.27□□□□□ -1.09
LINC00643-202ENST00000553426 FAT3Q8TDW7 4589 aa8.26□□□□□ -1.09
LINC00643-202ENST00000553426 COTL1Q14019 142 aa8.26□□□□□ -1.09
LINC00643-202ENST00000553426 TWIST1Q15672 202 aa8.26□□□□□ -1.09
LINC00643-202ENST00000553426 SMIM15Q7Z3B0 74 aa8.26□□□□□ -1.09
LINC00643-202ENST00000553426 TCTE3Q8IZS6 198 aa8.26□□□□□ -1.09
LINC00643-202ENST00000553426 C9orf163Q8N9P6 203 aa8.26□□□□□ -1.09
LINC00643-202ENST00000553426 AP5S1Q9NUS5 200 aa8.26□□□□□ -1.09
LINC00643-202ENST00000553426 TRBV20OR9-2A0A075B6H5 130 aa8.25□□□□□ -1.09
LINC00643-202ENST00000553426 NUDT10Q8NFP7 164 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms