RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 STAG3L3P0CL85 134 aa8□□□□□ -1.13
SCAF11-208ENST00000546534 GCHFRP30047 84 aa8□□□□□ -1.13
SCAF11-208ENST00000546534 PKIAP61925 76 aa8□□□□□ -1.13
SCAF11-208ENST00000546534 RBX1P62877 108 aa8□□□□□ -1.13
SCAF11-208ENST00000546534 PRR3P79522 188 aaKnown RBP8□□□□□ -1.13
SCAF11-208ENST00000546534 CYCSP99999 105 aaKnown RBP8□□□□□ -1.13
SCAF11-208ENST00000546534 NEXN-AS1Q8NBZ9 246 aa8□□□□□ -1.13
SCAF11-208ENST00000546534 PHLDA3Q9Y5J5 127 aa8□□□□□ -1.13
SCAF11-208ENST00000546534 IGLV10-54A0A075B6I4 117 aa7.99□□□□□ -1.13
SCAF11-208ENST00000546534 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.99□□□□□ -1.13
SCAF11-208ENST00000546534 FAM240BA0A1B0GVZ2 78 aa7.99□□□□□ -1.13
SCAF11-208ENST00000546534 TPT1P13693 172 aaKnown RBP7.99□□□□□ -1.13
SCAF11-208ENST00000546534 RPL12P30050 165 aaKnown RBP7.99□□□□□ -1.13
SCAF11-208ENST00000546534 CDC34P49427 236 aaPredicted RBP7.99□□□□□ -1.13
SCAF11-208ENST00000546534 CRIP1P50238 77 aa7.99□□□□□ -1.13
SCAF11-208ENST00000546534 NTM-AS1Q6ZSK4 140 aa7.99□□□□□ -1.13
SCAF11-208ENST00000546534 PPP1R1CQ8WVI7 109 aa7.99□□□□□ -1.13
SCAF11-208ENST00000546534 SH2D1AO60880 128 aa7.98□□□□□ -1.13
SCAF11-208ENST00000546534 H2BFSP57053 126 aa7.98□□□□□ -1.13
SCAF11-208ENST00000546534 GAGE6Q13070 117 aa7.98□□□□□ -1.13
SCAF11-208ENST00000546534 GTSF1Q8WW33 167 aa7.98□□□□□ -1.13
SCAF11-208ENST00000546534 RAB24Q969Q5 203 aa7.98□□□□□ -1.13
SCAF11-208ENST00000546534 MPC2O95563 127 aa7.97□□□□□ -1.13
SCAF11-208ENST00000546534 CT83Q5H943 113 aa7.97□□□□□ -1.13
SCAF11-208ENST00000546534 PRR27Q6MZM9 219 aa7.97□□□□□ -1.13
SCAF11-208ENST00000546534 ZFP82Q8N141 532 aa7.97□□□□□ -1.13
SCAF11-208ENST00000546534 TMSB15BA0A087X1C1 80 aa7.96□□□□□ -1.14
SCAF11-208ENST00000546534 RAB4BP61018 213 aa7.96□□□□□ -1.14
SCAF11-208ENST00000546534 REG3AQ06141 175 aa7.96□□□□□ -1.14
SCAF11-208ENST00000546534 ZNF56Q15929 161 aa7.96□□□□□ -1.14
SCAF11-208ENST00000546534 REG3GQ6UW15 175 aa7.96□□□□□ -1.14
SCAF11-208ENST00000546534 Q86TA4 180 aa7.96□□□□□ -1.14
SCAF11-208ENST00000546534 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.96□□□□□ -1.14
SCAF11-208ENST00000546534 TMEM167BQ9NRX6 74 aa7.96□□□□□ -1.14
SCAF11-208ENST00000546534 MUC21A0A0G2JKD1 596 aa7.95□□□□□ -1.14
SCAF11-208ENST00000546534 COX6A2Q02221 97 aa7.95□□□□□ -1.14
SCAF11-208ENST00000546534 SPINK6Q6UWN8 80 aa7.95□□□□□ -1.14
SCAF11-208ENST00000546534 A0A1W2PRE2 83 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 CXorf1O96002 111 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 IFNA7P01567 189 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 PET100P0DJ07 73 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 RAB5CP51148 216 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 MAJINQ3KP22 176 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 TMEM97Q5BJF2 176 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 FAM162BQ5T6X4 162 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 COX8CQ7Z4L0 72 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 LYPD6BQ8NI32 183 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 DERL1Q9BUN8 251 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 VAX2Q9UIW0 290 aa7.94□□□□□ -1.14
SCAF11-208ENST00000546534 LPAP08519 4548 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 TRBV25-1A0A075B6N4 114 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 TRAV8-4A0A0B4J246 113 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 IGKV2-24A0A0C4DH68 120 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 TRBV6-1A0A0K0K1D8 114 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 PEX7O00628 323 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 P01737 135 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 RNF151Q2KHN1 245 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 MZT2BQ6NZ67 158 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 STPG4Q8N801 248 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 PRSS3P2Q8NHM4 247 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 CCDC32Q9BV29 185 aa7.93□□□□□ -1.14
SCAF11-208ENST00000546534 NDUFS6O75380 124 aaKnown RBP7.92□□□□□ -1.14
SCAF11-208ENST00000546534 SRSF9Q13242 221 aaKnown RBP eCLIP7.92□□□□□ -1.14
SCAF11-208ENST00000546534 IQCJQ1A5X6 159 aa7.92□□□□□ -1.14
SCAF11-208ENST00000546534 ZNF674Q2M3X9 581 aa7.92□□□□□ -1.14
SCAF11-208ENST00000546534 C20orf203Q8NBC4 194 aa7.92□□□□□ -1.14
SCAF11-208ENST00000546534 OR10AG1Q8NH19 301 aa7.92□□□□□ -1.14
SCAF11-208ENST00000546534 GFRA4Q9GZZ7 299 aa7.92□□□□□ -1.14
SCAF11-208ENST00000546534 ZFP30Q9Y2G7 519 aa7.92□□□□□ -1.14
SCAF11-208ENST00000546534 IGLV4-60A0A075B6I1 120 aa7.91□□□□□ -1.14
SCAF11-208ENST00000546534 F5H697 171 aa7.91□□□□□ -1.14
SCAF11-208ENST00000546534 ATP6V0CP27449 155 aa7.91□□□□□ -1.14
SCAF11-208ENST00000546534 RPS10P46783 165 aaKnown RBP7.91□□□□□ -1.14
SCAF11-208ENST00000546534 UBE2G2P60604 165 aa7.91□□□□□ -1.14
SCAF11-208ENST00000546534 LCE4AQ5TA78 99 aa7.91□□□□□ -1.14
SCAF11-208ENST00000546534 C15orf56Q8N910 161 aa7.91□□□□□ -1.14
SCAF11-208ENST00000546534 IGHV1-24A0A0C4DH33 117 aa7.9□□□□□ -1.14
SCAF11-208ENST00000546534 GZMBP10144 247 aa7.9□□□□□ -1.14
SCAF11-208ENST00000546534 HIST1H2BAQ96A08 127 aa7.9□□□□□ -1.14
SCAF11-208ENST00000546534 PSMG3Q9BT73 122 aaPredicted RBP7.9□□□□□ -1.14
SCAF11-208ENST00000546534 ACTR3CQ9C0K3 210 aaPredicted RBP7.9□□□□□ -1.14
SCAF11-208ENST00000546534 MUC21A0A140T8X8 626 aa7.89□□□□□ -1.15
SCAF11-208ENST00000546534 MBP02144 154 aa7.89□□□□□ -1.15
SCAF11-208ENST00000546534 ENKURQ8TC29 256 aa7.89□□□□□ -1.15
SCAF11-208ENST00000546534 ZNF471Q9BX82 626 aaPredicted RBP7.89□□□□□ -1.15
SCAF11-208ENST00000546534 A0A096LNI7 61 aa7.88□□□□□ -1.15
SCAF11-208ENST00000546534 A0A1B0GUV1 79 aa7.88□□□□□ -1.15
SCAF11-208ENST00000546534 FAM74A7A6NL05 159 aa7.88□□□□□ -1.15
SCAF11-208ENST00000546534 INMT-MINDY4F8WBC2 141 aa7.88□□□□□ -1.15
SCAF11-208ENST00000546534 SERF2P84101 59 aa7.88□□□□□ -1.15
SCAF11-208ENST00000546534 HIGD2BQ4VC39 106 aa7.88□□□□□ -1.15
SCAF11-208ENST00000546534 FMC1Q96HJ9 113 aa7.88□□□□□ -1.15
SCAF11-208ENST00000546534 TNFSF18Q9UNG2 199 aa7.88□□□□□ -1.15
SCAF11-208ENST00000546534 MUC2Q02817 5179 aa7.88□□□□□ -1.15
SCAF11-208ENST00000546534 DEFA3P59666 94 aa7.87□□□□□ -1.15
SCAF11-208ENST00000546534 UBE2G1P62253 170 aa7.87□□□□□ -1.15
SCAF11-208ENST00000546534 ZNF726P1Q15940 193 aa7.87□□□□□ -1.15
SCAF11-208ENST00000546534 CFAP161Q6P656 301 aa7.87□□□□□ -1.15
SCAF11-208ENST00000546534 INO80EQ8NBZ0 244 aaPredicted RBP7.87□□□□□ -1.15
SCAF11-208ENST00000546534 AQP10Q96PS8 301 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms