RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SMAGPQ0VAQ4 97 aa11.67□□□□□ -0.54
LDLR-204ENST00000545707 PAPPA-AS1Q5QFB9 102 aa11.67□□□□□ -0.54
LDLR-204ENST00000545707 GAGE12HA6NDE8 117 aa11.66□□□□□ -0.54
LDLR-204ENST00000545707 SMCPP49901 116 aaPredicted RBP11.66□□□□□ -0.54
LDLR-204ENST00000545707 PROK1P58294 105 aa11.66□□□□□ -0.54
LDLR-204ENST00000545707 SYT8Q8NBV8 401 aa11.66□□□□□ -0.54
LDLR-204ENST00000545707 J3QQQ9 107 aa11.66□□□□□ -0.54
LDLR-204ENST00000545707 RBMY1A1P0DJD3 496 aaKnown RBP11.66□□□□□ -0.54
LDLR-204ENST00000545707 RBMY1CP0DJD4 496 aa11.66□□□□□ -0.54
LDLR-204ENST00000545707 RBMY1FQ15415 496 aaKnown RBP11.66□□□□□ -0.54
LDLR-204ENST00000545707 HIST2H2BDQ6DRA6 164 aa11.66□□□□□ -0.54
LDLR-204ENST00000545707 NDUFA11Q86Y39 141 aa11.66□□□□□ -0.54
LDLR-204ENST00000545707 ZNF418Q8TF45 676 aaPredicted RBP11.66□□□□□ -0.54
LDLR-204ENST00000545707 AMELXQ99217 191 aa11.66□□□□□ -0.54
LDLR-204ENST00000545707 ZNF580Q9UK33 172 aa11.66□□□□□ -0.54
LDLR-204ENST00000545707 KNCNA6PVL3 124 aa11.65□□□□□ -0.54
LDLR-204ENST00000545707 IGHV3-30P01768 117 aa11.65□□□□□ -0.54
LDLR-204ENST00000545707 IGHV3-30-5P0DP03 117 aa11.65□□□□□ -0.54
LDLR-204ENST00000545707 PTH2Q96A98 100 aa11.65□□□□□ -0.54
LDLR-204ENST00000545707 CFC1BP0CG36 223 aa11.65□□□□□ -0.55
LDLR-204ENST00000545707 CFC1P0CG37 223 aa11.65□□□□□ -0.55
LDLR-204ENST00000545707 DEFB136Q30KP8 78 aa11.65□□□□□ -0.55
LDLR-204ENST00000545707 C18orf65Q6ZTR6 163 aa11.65□□□□□ -0.55
LDLR-204ENST00000545707 Q9UF83 564 aa11.65□□□□□ -0.55
LDLR-204ENST00000545707 MYO9AB2RTY4 2548 aa11.64□□□□□ -0.55
LDLR-204ENST00000545707 HOXD3P31249 432 aaPredicted RBP11.64□□□□□ -0.55
LDLR-204ENST00000545707 SAMD13Q5VXD3 122 aa11.64□□□□□ -0.55
LDLR-204ENST00000545707 DLX4Q92988 240 aaPredicted RBP11.64□□□□□ -0.55
LDLR-204ENST00000545707 TEX15Q9BXT5 2789 aa11.64□□□□□ -0.55
LDLR-204ENST00000545707 A0A0J9YXV3 536 aa11.64□□□□□ -0.55
LDLR-204ENST00000545707 TRPT1Q86TN4 253 aaKnown RBP11.64□□□□□ -0.55
LDLR-204ENST00000545707 SLC25A29Q8N8R3 303 aa11.64□□□□□ -0.55
LDLR-204ENST00000545707 SIGMAR1Q99720 223 aa11.64□□□□□ -0.55
LDLR-204ENST00000545707 LRRK2Q5S007 2527 aa11.63□□□□□ -0.55
LDLR-204ENST00000545707 LGALS3P17931 250 aaKnown RBP11.63□□□□□ -0.55
LDLR-204ENST00000545707 CFAP126Q5VTH2 177 aa11.63□□□□□ -0.55
LDLR-204ENST00000545707 ODF3Q96PU9 254 aa11.63□□□□□ -0.55
LDLR-204ENST00000545707 CEMP1Q6PRD7 247 aaPredicted RBP11.62□□□□□ -0.55
LDLR-204ENST00000545707 C20orf203Q8NBC4 194 aa11.62□□□□□ -0.55
LDLR-204ENST00000545707 ABCA12Q86UK0 2595 aa11.62□□□□□ -0.55
LDLR-204ENST00000545707 J3QR89 54 aa11.62□□□□□ -0.55
LDLR-204ENST00000545707 RNASE13Q5GAN3 156 aaKnown RBP11.62□□□□□ -0.55
LDLR-204ENST00000545707 BEX4Q9NWD9 120 aaPredicted RBP11.62□□□□□ -0.55
LDLR-204ENST00000545707 NSUN5P1Q3KNT7 163 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 TCTEX1D4Q5JR98 221 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 NFE4Q86UQ8 179 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 ADARB2-AS1A8MUL3 147 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 I3L3M4 83 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 TCL1BO95988 128 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 SLURP1P55000 103 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 UBE2D3P61077 147 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 UBE2D2P62837 147 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 LINC01356Q8N9X3 169 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 DUX3Q96PT4 197 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 PTPN13Q12923 2485 aa11.61□□□□□ -0.55
LDLR-204ENST00000545707 IGLV4-3A0A075B6K6 122 aa11.6□□□□□ -0.55
LDLR-204ENST00000545707 TMEM223A0PJW6 202 aa11.6□□□□□ -0.55
LDLR-204ENST00000545707 ZNF22P17026 224 aaPredicted RBP11.6□□□□□ -0.55
LDLR-204ENST00000545707 RAX2Q96IS3 184 aa11.6□□□□□ -0.55
LDLR-204ENST00000545707 DEFB131AP59861 70 aa11.6□□□□□ -0.55
LDLR-204ENST00000545707 RHOHQ15669 191 aa11.6□□□□□ -0.55
LDLR-204ENST00000545707 VCX2Q9H322 139 aa11.6□□□□□ -0.55
LDLR-204ENST00000545707 TRAV2A0A0B4J234 112 aa11.59□□□□□ -0.55
LDLR-204ENST00000545707 H7C2G1 150 aa11.59□□□□□ -0.55
LDLR-204ENST00000545707 EIF4EBP3O60516 100 aaPredicted RBP11.59□□□□□ -0.55
LDLR-204ENST00000545707 A4D1N5 150 aa11.59□□□□□ -0.55
LDLR-204ENST00000545707 RHODO00212 210 aa11.59□□□□□ -0.55
LDLR-204ENST00000545707 GATA3P23771 443 aa11.59□□□□□ -0.55
LDLR-204ENST00000545707 FOXI1Q12951 378 aa11.59□□□□□ -0.55
LDLR-204ENST00000545707 SPXQ9BT56 116 aa11.59□□□□□ -0.55
LDLR-204ENST00000545707 TLN2Q9Y4G6 2542 aa11.58□□□□□ -0.56
LDLR-204ENST00000545707 ZNF702PQ9H963 129 aa11.58□□□□□ -0.56
LDLR-204ENST00000545707 ZNF462Q96JM2 2506 aa11.58□□□□□ -0.56
LDLR-204ENST00000545707 SCGB1C2P0DMR2 95 aa11.58□□□□□ -0.56
LDLR-204ENST00000545707 Q6ZSN1 163 aa11.58□□□□□ -0.56
LDLR-204ENST00000545707 C10orf126Q8N4M7 172 aa11.58□□□□□ -0.56
LDLR-204ENST00000545707 SPATA25Q9BR10 227 aa11.58□□□□□ -0.56
LDLR-204ENST00000545707 A0A096LNT2 108 aa11.57□□□□□ -0.56
LDLR-204ENST00000545707 LEPROTO15243 131 aa11.57□□□□□ -0.56
LDLR-204ENST00000545707 FAM104AQ969W3 186 aa11.57□□□□□ -0.56
LDLR-204ENST00000545707 C1QTNF4Q9BXJ3 329 aa11.57□□□□□ -0.56
LDLR-204ENST00000545707 PRO1854Q9UHT4 67 aa11.57□□□□□ -0.56
LDLR-204ENST00000545707 VPREB3Q9UKI3 123 aa11.57□□□□□ -0.56
LDLR-204ENST00000545707 TRGV11A0A075B6L2 103 aa11.57□□□□□ -0.56
LDLR-204ENST00000545707 RBMY1BA6NDE4 496 aaKnown RBP11.57□□□□□ -0.56
LDLR-204ENST00000545707 RBMY1EA6NEQ0 496 aaKnown RBP11.57□□□□□ -0.56
LDLR-204ENST00000545707 RBMY1DP0C7P1 496 aaKnown RBP11.57□□□□□ -0.56
LDLR-204ENST00000545707 MUSTN1Q8IVN3 82 aa11.57□□□□□ -0.56
LDLR-204ENST00000545707 CHD6Q8TD26 2715 aa11.56□□□□□ -0.56
LDLR-204ENST00000545707 TRAV8-3A0A0A6YYJ7 113 aa11.56□□□□□ -0.56
LDLR-204ENST00000545707 NAV2Q8IVL1 2488 aa11.56□□□□□ -0.56
LDLR-204ENST00000545707 TMEM89A2RUT3 159 aa11.56□□□□□ -0.56
LDLR-204ENST00000545707 CD28P10747 220 aa11.56□□□□□ -0.56
LDLR-204ENST00000545707 UBE2E2Q96LR5 201 aa11.56□□□□□ -0.56
LDLR-204ENST00000545707 NIPBLQ6KC79 2804 aaeCLIP11.55□□□□□ -0.56
LDLR-204ENST00000545707 EPG5Q9HCE0 2579 aa11.55□□□□□ -0.56
LDLR-204ENST00000545707 NF1P21359 2839 aa11.55□□□□□ -0.56
LDLR-204ENST00000545707 A8MZ25 164 aa11.55□□□□□ -0.56
LDLR-204ENST00000545707 ELANEP08246 267 aa11.55□□□□□ -0.56
LDLR-204ENST00000545707 FHL3Q13643 280 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 159.8 ms