RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TOR2AQ5JU69 321 aa8.33□□□□□ -1.08
USP28-212ENST00000544750 ZFP2Q6ZN57 461 aa8.33□□□□□ -1.08
USP28-212ENST00000544750 DNAJC30Q96LL9 226 aa8.33□□□□□ -1.08
USP28-212ENST00000544750 MED9Q9NWA0 146 aa8.33□□□□□ -1.08
USP28-212ENST00000544750 SNAI2O43623 268 aa8.32□□□□□ -1.08
USP28-212ENST00000544750 MGST1P10620 155 aaKnown RBP8.32□□□□□ -1.08
USP28-212ENST00000544750 GNG4P50150 75 aa8.32□□□□□ -1.08
USP28-212ENST00000544750 RPL37AP61513 92 aaKnown RBP8.32□□□□□ -1.08
USP28-212ENST00000544750 OR10AG1Q8NH19 301 aa8.32□□□□□ -1.08
USP28-212ENST00000544750 SMIM12Q96EX1 92 aa8.32□□□□□ -1.08
USP28-212ENST00000544750 SFRP2Q96HF1 295 aa8.32□□□□□ -1.08
USP28-212ENST00000544750 SSBP4Q9BWG4 385 aaPredicted RBP8.32□□□□□ -1.08
USP28-212ENST00000544750 Q9UF83 564 aa8.32□□□□□ -1.08
USP28-212ENST00000544750 PHLDA3Q9Y5J5 127 aa8.32□□□□□ -1.08
USP28-212ENST00000544750 M0R381 172 aa8.31□□□□□ -1.08
USP28-212ENST00000544750 ZFP82Q8N141 532 aa8.31□□□□□ -1.08
USP28-212ENST00000544750 C14orf178Q8N769 122 aaPredicted RBP8.31□□□□□ -1.08
USP28-212ENST00000544750 OR5AL1P0C617 328 aa8.3□□□□□ -1.08
USP28-212ENST00000544750 ATRAIDQ6UW56 229 aa8.3□□□□□ -1.08
USP28-212ENST00000544750 A0A087WWL8 130 aa8.29□□□□□ -1.08
USP28-212ENST00000544750 MUC21A0A0G2JKD1 596 aa8.29□□□□□ -1.08
USP28-212ENST00000544750 MUC21A0A140T8X8 626 aa8.29□□□□□ -1.08
USP28-212ENST00000544750 TMEM250H0YL14 139 aa8.29□□□□□ -1.08
USP28-212ENST00000544750 K7EN84 100 aa8.29□□□□□ -1.08
USP28-212ENST00000544750 RHODO00212 210 aa8.29□□□□□ -1.08
USP28-212ENST00000544750 IGLC6P0CF74 106 aa8.29□□□□□ -1.08
USP28-212ENST00000544750 GZMBP10144 247 aa8.29□□□□□ -1.08
USP28-212ENST00000544750 RMI2Q96E14 147 aa8.29□□□□□ -1.08
USP28-212ENST00000544750 IGKV2D-24A0A075B6R9 120 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 GAGE12JA6NER3 117 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 GAGE1Q13065 139 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 GAGE4Q13068 117 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 GAGE5Q13069 117 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 GAGE13Q4V321 117 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 FAM74A4Q5TZK3 123 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 NIT1Q86X76 327 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 OR2D3Q8NGH3 330 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 OCC1Q8TAD7 63 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 FAM210AQ96ND0 272 aa8.28□□□□□ -1.08
USP28-212ENST00000544750 A0A087WWC5 75 aa8.27□□□□□ -1.09
USP28-212ENST00000544750 NDUFS6O75380 124 aaKnown RBP8.27□□□□□ -1.09
USP28-212ENST00000544750 TEX261Q6UWH6 196 aa8.27□□□□□ -1.09
USP28-212ENST00000544750 P01737 135 aa8.26□□□□□ -1.09
USP28-212ENST00000544750 RPS20P60866 119 aaKnown RBP8.26□□□□□ -1.09
USP28-212ENST00000544750 Q6ZRU5 148 aa8.26□□□□□ -1.09
USP28-212ENST00000544750 FER1L6-AS1Q8NA97 138 aa8.26□□□□□ -1.09
USP28-212ENST00000544750 NUDT10Q8NFP7 164 aa8.26□□□□□ -1.09
USP28-212ENST00000544750 NUDT11Q96G61 164 aa8.26□□□□□ -1.09
USP28-212ENST00000544750 RNASE7Q9H1E1 156 aaKnown RBP8.26□□□□□ -1.09
USP28-212ENST00000544750 KLK12Q9UKR0 248 aa8.26□□□□□ -1.09
USP28-212ENST00000544750 KIF25-AS1Q9Y6Z4 181 aa8.26□□□□□ -1.09
USP28-212ENST00000544750 SRP19P09132 144 aaKnown RBP8.25□□□□□ -1.09
USP28-212ENST00000544750 SPANXN1Q5VSR9 72 aa8.25□□□□□ -1.09
USP28-212ENST00000544750 EIF5A2Q9GZV4 153 aaKnown RBP8.25□□□□□ -1.09
USP28-212ENST00000544750 BIN3Q9NQY0 253 aa8.25□□□□□ -1.09
USP28-212ENST00000544750 SSTP61278 116 aa8.24□□□□□ -1.09
USP28-212ENST00000544750 C14orf177Q52M58 125 aa8.24□□□□□ -1.09
USP28-212ENST00000544750 UBE2WQ96B02 151 aa8.24□□□□□ -1.09
USP28-212ENST00000544750 CHCHD7Q9BUK0 85 aa8.24□□□□□ -1.09
USP28-212ENST00000544750 TRBV10-1A0A0K0K1A3 114 aa8.23□□□□□ -1.09
USP28-212ENST00000544750 C9JQL5 133 aa8.23□□□□□ -1.09
USP28-212ENST00000544750 PANO1I0J062 215 aa8.23□□□□□ -1.09
USP28-212ENST00000544750 CTRLP40313 264 aa8.23□□□□□ -1.09
USP28-212ENST00000544750 CEBPGP53567 150 aa8.23□□□□□ -1.09
USP28-212ENST00000544750 RAB4BP61018 213 aa8.23□□□□□ -1.09
USP28-212ENST00000544750 LYZL1Q6UWQ5 148 aa8.23□□□□□ -1.09
USP28-212ENST00000544750 TPPP3Q9BW30 176 aa8.23□□□□□ -1.09
USP28-212ENST00000544750 RPP21Q9H633 154 aaKnown RBP8.23□□□□□ -1.09
USP28-212ENST00000544750 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.23□□□□□ -1.09
USP28-212ENST00000544750 XKRY2A2RUG3 117 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 UBE2D3P61077 147 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 UBE2D2P62837 147 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 SRSF3P84103 164 aaKnown RBP8.22□□□□□ -1.09
USP28-212ENST00000544750 ZNF56Q15929 161 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 FAM231DQ6ZW35 169 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 C9orf163Q8N9P6 203 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 NEXN-AS1Q8NBZ9 246 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 OR10G8Q8NGN5 311 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 AP1S3Q96PC3 154 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 SMIM7Q9BQ49 75 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 CNFNQ9BYD5 112 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 KRTAP3-3Q9BYR6 98 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 KRTAP3-2Q9BYR7 98 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 URGCP-MRPS24S4R325 110 aa8.22□□□□□ -1.09
USP28-212ENST00000544750 F2Z2F3 143 aa8.21□□□□□ -1.1
USP28-212ENST00000544750 CACNG7P62955 275 aa8.21□□□□□ -1.1
USP28-212ENST00000544750 Q0VG73 95 aa8.21□□□□□ -1.1
USP28-212ENST00000544750 ELOBQ15370 118 aa8.21□□□□□ -1.1
USP28-212ENST00000544750 ENHOQ6UWT2 76 aa8.21□□□□□ -1.1
USP28-212ENST00000544750 LINC01551Q86U37 167 aa8.21□□□□□ -1.1
USP28-212ENST00000544750 GTSF1Q8WW33 167 aa8.21□□□□□ -1.1
USP28-212ENST00000544750 TRBV7-3A0A075B6L6 115 aa8.2□□□□□ -1.1
USP28-212ENST00000544750 ZNF727A8MUV8 499 aa8.2□□□□□ -1.1
USP28-212ENST00000544750 PRSS1P07477 247 aa8.2□□□□□ -1.1
USP28-212ENST00000544750 RPL36AP83881 106 aaKnown RBP8.2□□□□□ -1.1
USP28-212ENST00000544750 RPL36ALQ969Q0 106 aaKnown RBP8.2□□□□□ -1.1
USP28-212ENST00000544750 A0A087WX48 190 aa8.19□□□□□ -1.1
USP28-212ENST00000544750 USP17L23D6RBM5 183 aa8.19□□□□□ -1.1
USP28-212ENST00000544750 GATCO43716 136 aaKnown RBP8.19□□□□□ -1.1
USP28-212ENST00000544750 NTF3P20783 257 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms