RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 A0A096LPF7 62 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 TRAV26-2A0A0B4J265 109 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 TRBV10-1A0A0K0K1A3 114 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 GAGE12JA6NER3 117 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 M0QY20 66 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 GAGE1Q13065 139 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 GAGE4Q13068 117 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 GAGE5Q13069 117 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 GAGE13Q4V321 117 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 FAM104BQ5XKR9 115 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 GATD1Q8NB37 220 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 RNF185Q96GF1 192 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 SMCO4Q9NRQ5 59 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 Q9UF83 564 aa8.07□□□□□ -1.12
YBX3-213ENST00000542641 ATP6V1G1O75348 118 aa8.06□□□□□ -1.12
YBX3-213ENST00000542641 SRIP30626 198 aa8.06□□□□□ -1.12
YBX3-213ENST00000542641 RPL36AP83881 106 aaKnown RBP8.06□□□□□ -1.12
YBX3-213ENST00000542641 ELOBQ15370 118 aa8.06□□□□□ -1.12
YBX3-213ENST00000542641 CBLN2Q8IUK8 224 aa8.06□□□□□ -1.12
YBX3-213ENST00000542641 FRZBQ92765 325 aa8.06□□□□□ -1.12
YBX3-213ENST00000542641 RPL36ALQ969Q0 106 aaKnown RBP8.06□□□□□ -1.12
YBX3-213ENST00000542641 TRBV7-3A0A075B6L6 115 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 TGIF2-C20orf24A0A0A6YYL0 155 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 S100A1P23297 94 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 MRPL51Q4U2R6 128 aaKnown RBP8.05□□□□□ -1.12
YBX3-213ENST00000542641 NEGR1Q7Z3B1 354 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 SH2D6Q7Z4S9 175 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 NEXN-AS1Q8NBZ9 246 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 ZNRF2Q8NHG8 242 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 MRAP2Q96G30 205 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 DNAJC30Q96LL9 226 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 NIT2Q9NQR4 276 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 TNFRSF18Q9Y5U5 241 aa8.05□□□□□ -1.12
YBX3-213ENST00000542641 TRBV24-1A0A075B6N3 115 aa8.04□□□□□ -1.12
YBX3-213ENST00000542641 CKS2P33552 79 aa8.04□□□□□ -1.12
YBX3-213ENST00000542641 COX19Q49B96 90 aa8.04□□□□□ -1.12
YBX3-213ENST00000542641 TMEM136Q6ZRR5 245 aa8.04□□□□□ -1.12
YBX3-213ENST00000542641 PLECQ15149 4684 aaKnown RBP8.04□□□□□ -1.12
YBX3-213ENST00000542641 SMKR1H3BMG3 65 aa8.03□□□□□ -1.12
YBX3-213ENST00000542641 GAS8-AS1O95177 125 aa8.03□□□□□ -1.12
YBX3-213ENST00000542641 NCR2O95944 276 aa8.03□□□□□ -1.12
YBX3-213ENST00000542641 CCL18P55774 89 aa8.03□□□□□ -1.12
YBX3-213ENST00000542641 ATP6V0E2Q8NHE4 81 aa8.03□□□□□ -1.12
YBX3-213ENST00000542641 RPL39LQ96EH5 51 aaKnown RBP8.03□□□□□ -1.12
YBX3-213ENST00000542641 GNB1LQ9BYB4 327 aa8.03□□□□□ -1.12
YBX3-213ENST00000542641 SCO1O75880 301 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 HLA-DQA1P01909 254 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 APCSP02743 223 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 PPBPP02775 128 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 LINC00694P0DN24 101 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 UBE2D3P61077 147 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 UBE2D2P62837 147 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 ESRGQ1W209 222 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 OR10J3Q5JRS4 329 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 LYPD5Q6UWN5 251 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.02□□□□□ -1.13
YBX3-213ENST00000542641 YPEL4Q96NS1 127 aa8.02□□□□□ -1.13
YBX3-213ENST00000542641 TENM2Q9NT68 2774 aa8.01□□□□□ -1.13
YBX3-213ENST00000542641 D6R8Y8 96 aa8.01□□□□□ -1.13
YBX3-213ENST00000542641 PPP1R17O96001 155 aa8.01□□□□□ -1.13
YBX3-213ENST00000542641 MT-ND6P03923 174 aa8.01□□□□□ -1.13
YBX3-213ENST00000542641 RPS10P46783 165 aaKnown RBP8.01□□□□□ -1.13
YBX3-213ENST00000542641 DAZ4Q86SG3 579 aaKnown RBP8.01□□□□□ -1.13
YBX3-213ENST00000542641 UBE2DNLQ8IWF7 75 aa8.01□□□□□ -1.13
YBX3-213ENST00000542641 ORMDL3Q8N138 153 aa8.01□□□□□ -1.13
YBX3-213ENST00000542641 GTSF1LQ9H1H1 148 aa8.01□□□□□ -1.13
YBX3-213ENST00000542641 DAZ3Q9NR90 486 aaKnown RBP8.01□□□□□ -1.13
YBX3-213ENST00000542641 IGHV3-38A0A0C4DH36 116 aa8□□□□□ -1.13
YBX3-213ENST00000542641 TRBV6-5A0A0K0K1A5 114 aa8□□□□□ -1.13
YBX3-213ENST00000542641 NRACQ8N912 160 aa8□□□□□ -1.13
YBX3-213ENST00000542641 ST20Q9HBF5 79 aa8□□□□□ -1.13
YBX3-213ENST00000542641 LINC00588Q9Y4M8 146 aa8□□□□□ -1.13
YBX3-213ENST00000542641 SDHAF1A6NFY7 115 aa7.99□□□□□ -1.13
YBX3-213ENST00000542641 TNFRSF6BO95407 300 aa7.99□□□□□ -1.13
YBX3-213ENST00000542641 TIRAPP58753 221 aa7.99□□□□□ -1.13
YBX3-213ENST00000542641 FABP9Q0Z7S8 132 aa7.99□□□□□ -1.13
YBX3-213ENST00000542641 KIAA1644Q3SXP7 199 aa7.99□□□□□ -1.13
YBX3-213ENST00000542641 LGALS9CQ6DKI2 356 aa7.99□□□□□ -1.13
YBX3-213ENST00000542641 PRELID3AQ96N28 172 aa7.99□□□□□ -1.13
YBX3-213ENST00000542641 TRAPPC1Q9Y5R8 145 aa7.99□□□□□ -1.13
YBX3-213ENST00000542641 LY6G6CO95867 125 aa7.98□□□□□ -1.13
YBX3-213ENST00000542641 SUMO2P61956 95 aaKnown RBP7.98□□□□□ -1.13
YBX3-213ENST00000542641 CDPF1Q6NVV7 123 aa7.98□□□□□ -1.13
YBX3-213ENST00000542641 C20orf78Q9BR46 151 aa7.98□□□□□ -1.13
YBX3-213ENST00000542641 COLCA2A8K830 154 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 VCYO14598 125 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 PHOX2AO14813 284 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 NPYP01303 97 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 PMCHP20382 165 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 POLR2KP53803 58 aaKnown RBP7.97□□□□□ -1.13
YBX3-213ENST00000542641 TMEM97Q5BJF2 176 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 LELP1Q5T871 98 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 DEFB104AQ8WTQ1 72 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 LINC00476Q8WZB0 136 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 TMEM70Q9BUB7 260 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 LAMTOR2Q9Y2Q5 125 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 MRPS16Q9Y3D3 137 aaKnown RBP7.97□□□□□ -1.13
YBX3-213ENST00000542641 LYSTQ99698 3801 aa7.97□□□□□ -1.13
YBX3-213ENST00000542641 TRBV6-8A0A0A6YYG3 113 aa7.96□□□□□ -1.14
YBX3-213ENST00000542641 TRAV8-6A0A0B4J262 113 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms