RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 SNRPD3P62318 126 aaKnown RBP7.23□□□□□ -1.25
CLIP1-212ENST00000540304 GAGE13Q4V321 117 aa7.23□□□□□ -1.25
CLIP1-212ENST00000540304 LINC00173Q6ZV60 143 aa7.23□□□□□ -1.25
CLIP1-212ENST00000540304 APRG1Q8IVJ8 170 aa7.23□□□□□ -1.25
CLIP1-212ENST00000540304 AMN1Q8IY45 258 aa7.23□□□□□ -1.25
CLIP1-212ENST00000540304 SPANXA1Q9NS26 97 aa7.23□□□□□ -1.25
CLIP1-212ENST00000540304 K7ERJ3 54 aa7.22□□□□□ -1.25
CLIP1-212ENST00000540304 C4orf26Q17RF5 130 aa7.22□□□□□ -1.25
CLIP1-212ENST00000540304 C1orf43Q9BWL3 253 aa7.22□□□□□ -1.25
CLIP1-212ENST00000540304 TMEM191AQ9H0A3 160 aa7.22□□□□□ -1.25
CLIP1-212ENST00000540304 U3KQK5 164 aa7.22□□□□□ -1.25
CLIP1-212ENST00000540304 KLHL30-AS1Q8NEE0 82 aa7.22□□□□□ -1.25
CLIP1-212ENST00000540304 TRAV4A0A0B4J268 109 aa7.21□□□□□ -1.25
CLIP1-212ENST00000540304 D6R8Y8 96 aa7.21□□□□□ -1.25
CLIP1-212ENST00000540304 OR5AL1P0C617 328 aa7.21□□□□□ -1.25
CLIP1-212ENST00000540304 ZNF688P0C7X2 276 aa7.21□□□□□ -1.25
CLIP1-212ENST00000540304 RPL35AP18077 110 aaKnown RBP7.21□□□□□ -1.25
CLIP1-212ENST00000540304 MRPL51Q4U2R6 128 aaKnown RBP7.21□□□□□ -1.25
CLIP1-212ENST00000540304 PSMG4Q5JS54 123 aa7.21□□□□□ -1.25
CLIP1-212ENST00000540304 ORMDL3Q8N138 153 aa7.21□□□□□ -1.25
CLIP1-212ENST00000540304 PMCHL2Q9BQD1 86 aa7.21□□□□□ -1.25
CLIP1-212ENST00000540304 PRADC1Q9BSG0 188 aa7.21□□□□□ -1.25
CLIP1-212ENST00000540304 MSRB1Q9NZV6 116 aa7.21□□□□□ -1.25
CLIP1-212ENST00000540304 PEMTQ9UBM1 199 aa7.21□□□□□ -1.25
CLIP1-212ENST00000540304 CRXO43186 299 aaPredicted RBP7.21□□□□□ -1.26
CLIP1-212ENST00000540304 SPRY2O43597 315 aa7.21□□□□□ -1.26
CLIP1-212ENST00000540304 RNASE1P07998 156 aaKnown RBP7.21□□□□□ -1.26
CLIP1-212ENST00000540304 SMIM13P0DJ93 91 aa7.21□□□□□ -1.26
CLIP1-212ENST00000540304 FGF6P10767 208 aa7.21□□□□□ -1.26
CLIP1-212ENST00000540304 RNASE4P34096 147 aaKnown RBP7.21□□□□□ -1.26
CLIP1-212ENST00000540304 BAALCQ8WXS3 180 aa7.21□□□□□ -1.26
CLIP1-212ENST00000540304 MDFICQ9P1T7 246 aa7.21□□□□□ -1.26
CLIP1-212ENST00000540304 PKIGQ9Y2B9 76 aa7.21□□□□□ -1.26
CLIP1-212ENST00000540304 TIMM8BQ9Y5J9 83 aaPredicted RBP7.21□□□□□ -1.26
CLIP1-212ENST00000540304 KLLNB2CW77 178 aa7.2□□□□□ -1.26
CLIP1-212ENST00000540304 CACNG7P62955 275 aa7.2□□□□□ -1.26
CLIP1-212ENST00000540304 ODF3Q96PU9 254 aa7.2□□□□□ -1.26
CLIP1-212ENST00000540304 IGHV1-24A0A0C4DH33 117 aa7.2□□□□□ -1.26
CLIP1-212ENST00000540304 IGHV4-4A0A075B6R2 117 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 A0A0J9YX75 114 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 H3BVH4 76 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 CKS2P33552 79 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 RNF185Q96GF1 192 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 KLK5Q9Y337 293 aaPredicted RBP7.19□□□□□ -1.26
CLIP1-212ENST00000540304 V9GYY9 64 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 SMKR1H3BMG3 65 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 CRLF1O75462 422 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 LEPP41159 167 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 ASIPP42127 132 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 SPANXN1Q5VSR9 72 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 PRSS3P2Q8NHM4 247 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 C16orf95Q9H693 158 aa7.19□□□□□ -1.26
CLIP1-212ENST00000540304 NCR2O95944 276 aa7.18□□□□□ -1.26
CLIP1-212ENST00000540304 MED14OSP0DP75 135 aa7.18□□□□□ -1.26
CLIP1-212ENST00000540304 ZC2HC1BQ5TFG8 222 aa7.18□□□□□ -1.26
CLIP1-212ENST00000540304 C11orf44Q8N8P7 122 aa7.18□□□□□ -1.26
CLIP1-212ENST00000540304 DLX4Q92988 240 aaPredicted RBP7.18□□□□□ -1.26
CLIP1-212ENST00000540304 AP5S1Q9NUS5 200 aa7.18□□□□□ -1.26
CLIP1-212ENST00000540304 TRAV2A0A0B4J234 112 aa7.18□□□□□ -1.26
CLIP1-212ENST00000540304 DUSP14O95147 198 aaKnown RBP7.18□□□□□ -1.26
CLIP1-212ENST00000540304 S100A4P26447 101 aaKnown RBP7.18□□□□□ -1.26
CLIP1-212ENST00000540304 FXYD2P54710 66 aa7.18□□□□□ -1.26
CLIP1-212ENST00000540304 ATP6V0E2Q8NHE4 81 aa7.18□□□□□ -1.26
CLIP1-212ENST00000540304 CARD19Q96LW7 228 aa7.18□□□□□ -1.26
CLIP1-212ENST00000540304 SETXQ7Z333 2677 aaKnown RBP7.18□□□□□ -1.26
CLIP1-212ENST00000540304 E9PLD3 99 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 GAS8-AS1O95177 125 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 NPYP01303 97 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 SMCPP49901 116 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-212ENST00000540304 HILS1P60008 231 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 LINC01006Q8NI28 216 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 PHLDA1Q8WV24 401 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-212ENST00000540304 A0A1B0GX51 115 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 LEPROTL1O95214 131 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 CD28P10747 220 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 IFI27P40305 119 aaPredicted RBP7.17□□□□□ -1.26
CLIP1-212ENST00000540304 FXYD7P58549 80 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 DYNLRB2Q8TF09 96 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 SMR3AQ99954 134 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 JMJD1CQ15652 2540 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 OTOGQ6ZRI0 2925 aa7.17□□□□□ -1.26
CLIP1-212ENST00000540304 LOC389332A0A1B0GUA5 103 aa7.16□□□□□ -1.26
CLIP1-212ENST00000540304 SNCGO76070 127 aa7.16□□□□□ -1.26
CLIP1-212ENST00000540304 IGKV3-20P01619 116 aa7.16□□□□□ -1.26
CLIP1-212ENST00000540304 HERVK_113P63121 156 aa7.16□□□□□ -1.26
CLIP1-212ENST00000540304 TMEM61Q8N0U2 210 aa7.16□□□□□ -1.26
CLIP1-212ENST00000540304 TRAV12-3A0A0B4J271 114 aa7.16□□□□□ -1.26
CLIP1-212ENST00000540304 A0A0U1RRA0 63 aa7.16□□□□□ -1.26
CLIP1-212ENST00000540304 K7EMI3 77 aa7.16□□□□□ -1.26
CLIP1-212ENST00000540304 NMUP48645 174 aa7.16□□□□□ -1.26
CLIP1-212ENST00000540304 PHLDA3Q9Y5J5 127 aa7.16□□□□□ -1.26
CLIP1-212ENST00000540304 FAM236AA0A1B0GUQ0 79 aa7.15□□□□□ -1.26
CLIP1-212ENST00000540304 FAM236BA0A1B0GV22 79 aa7.15□□□□□ -1.26
CLIP1-212ENST00000540304 GNRH2O43555 120 aa7.15□□□□□ -1.26
CLIP1-212ENST00000540304 GCSHP23434 173 aa7.15□□□□□ -1.26
CLIP1-212ENST00000540304 ZNRF2Q8NHG8 242 aa7.15□□□□□ -1.26
CLIP1-212ENST00000540304 IGLL5B9A064 214 aa7.15□□□□□ -1.26
CLIP1-212ENST00000540304 M0R381 172 aa7.15□□□□□ -1.26
CLIP1-212ENST00000540304 CCL24O00175 119 aa7.15□□□□□ -1.26
CLIP1-212ENST00000540304 LY6G6DO95868 133 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms