RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 IZUMO1RA6ND01 250 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 B4DSR2 109 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 C11orf94C9JXX5 98 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 TMEM262E9PQX1 116 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 CCDC179H3BU77 68 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 SSSCA1O60232 199 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 IGHV3-48P01763 117 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 TFF1P04155 84 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 PRTN3P24158 256 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 MYCNOSP40205 109 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 ATP5G3P48201 142 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 INSL3P51460 131 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 HBG1P69891 147 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 HBG2P69892 147 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 PRR3P79522 188 aaKnown RBP2.27□□□□□ -2.05
USP48-215ENST00000534705 ZNF90Q03938 601 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 DIAPH2-AS1Q14236 149 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 Q56UQ5 140 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 GDF5OSQ5U4N7 250 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 CFAP126Q5VTH2 177 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 TEX36Q5VZQ5 186 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 ATP5L2Q7Z4Y8 100 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 BPIFA4PQ86YQ2 179 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 OSR2Q8N2R0 312 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 DEFB108BQ8NET1 73 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 SCGB1C1Q8TD33 95 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 CCL17Q92583 94 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 SPTSSAQ969W0 71 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 CARD19Q96LW7 228 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 ANAPC13Q9BS18 74 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 FAM103A1Q9BTL3 118 aaKnown RBP2.27□□□□□ -2.05
USP48-215ENST00000534705 KAAG1Q9UBP8 84 aa2.27□□□□□ -2.05
USP48-215ENST00000534705 IGKV1-27A0A075B6S5 117 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 TRBV6-6A0A0A6YYG2 114 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 IGHV1-24A0A0C4DH33 117 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 TINCRA0A1B0GVN0 87 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 ZNF850A8MQ14 1090 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 IGLL5B9A064 214 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 FNDC10F2Z333 226 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 J3QT63 122 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 M0R2Z0 102 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 UPK2O00526 184 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 SYNGR2O43760 224 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 DHRS3O75911 302 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 CNIH1O95406 144 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 CXorf1O96002 111 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 MOSP00540 346 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 IGKV1-39P01597 117 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 IGKV1D-39P04432 117 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 CRYGDP07320 174 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 IGHV3-43DP0DP04 118 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 ASIPP42127 132 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 LGALS9BQ3B8N2 356 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 ETDBQ3ZM63 59 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 TTC32Q5I0X7 151 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 LGALS9CQ6DKI2 356 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 ACP7Q6ZNF0 438 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 LINC00173Q6ZV60 143 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 FAM19A5Q7Z5A7 132 aaPredicted RBP2.26□□□□□ -2.05
USP48-215ENST00000534705 GAPTQ8N292 157 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 TMEM158Q8WZ71 300 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 IGF2BP2-AS1Q96M15 143 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 PRELID3AQ96N28 172 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 AP1S3Q96PC3 154 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 GAFA1Q96PS6 74 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 TMEM147Q9BVK8 224 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 SPANXDQ9BXN6 97 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 PBOV1Q9GZY1 135 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 MAP1LC3AQ9H492 121 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 IDI2-AS1Q9NZ38 188 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 TP53TG1Q9Y2A0 90 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 SOX21Q9Y651 276 aaPredicted RBP2.26□□□□□ -2.05
USP48-215ENST00000534705 DNAH9Q9NYC9 4486 aa2.26□□□□□ -2.05
USP48-215ENST00000534705 FBN3Q75N90 2809 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 IGKV1D-17A0A075B6S4 117 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 IGHV3OR15-7A0A075B7D8 119 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 A0A096LNJ9 63 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 TRBV7-7A0A0K0K1E9 115 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 TCRBV4S1A1TA0A5B7 111 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 LINC01546A6NGU7 62 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 PEX7O00628 323 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 IGKV1-5P01602 117 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 RBP4P02753 201 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 SLC25A5P05141 298 aaKnown RBP2.25□□□□□ -2.05
USP48-215ENST00000534705 SMIM13P0DJ93 91 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 FXYD2P54710 66 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 SYNJ2BPP57105 145 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 TCTAP57738 103 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 UBE2D3P61077 147 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 HERVK_113P61574 105 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 UBE2D2P62837 147 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 SLC38A11Q08AI6 406 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 EGFEM1PQ0D2K5 195 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 CATR1Q13166 79 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 KISS1Q15726 138 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 RRN3P1Q2M238 152 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 ABCA11PQ4W5N1 156 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 HCP5Q6MZN7 132 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 ZNF493Q6ZR52 646 aa2.25□□□□□ -2.05
USP48-215ENST00000534705 TEN1Q86WV5 123 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms