RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 RP1P56715 2156 aa2.85□□□□□ -1.95
USP47-204ENST00000525078 SDK2Q58EX2 2172 aa2.85□□□□□ -1.95
USP47-204ENST00000525078 DDX60LQ5H9U9 1706 aaKnown RBP2.85□□□□□ -1.95
USP47-204ENST00000525078 NUMA1Q14980 2115 aa2.84□□□□□ -1.95
USP47-204ENST00000525078 KCPQ6ZWJ8 1503 aa2.84□□□□□ -1.95
USP47-204ENST00000525078 SHROOM3Q8TF72 1996 aa2.84□□□□□ -1.95
USP47-204ENST00000525078 IGKV1D-17A0A075B6S4 117 aa2.84□□□□□ -1.95
USP47-204ENST00000525078 TRAV2A0A0B4J234 112 aa2.84□□□□□ -1.95
USP47-204ENST00000525078 A0A1B0GVY2 172 aa2.84□□□□□ -1.95
USP47-204ENST00000525078 IL7P13232 177 aa2.84□□□□□ -1.95
USP47-204ENST00000525078 CNBPP62633 177 aaKnown RBP2.84□□□□□ -1.95
USP47-204ENST00000525078 COL5A1-AS1Q5SY13 56 aa2.84□□□□□ -1.95
USP47-204ENST00000525078 HCP5Q6MZN7 132 aa2.84□□□□□ -1.95
USP47-204ENST00000525078 CITO14578 2027 aa2.84□□□□□ -1.95
USP47-204ENST00000525078 ZFHX2Q9C0A1 2572 aaPredicted RBP2.83□□□□□ -1.96
USP47-204ENST00000525078 PIGBOS1A0A0B4J2F0 54 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 FAM24AA6NFZ4 105 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 A6NIN4 97 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 OOSP1A8MZH6 123 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 H3BRM9 83 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 S100A7L2Q5SY68 101 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 C12orf73Q69YU5 71 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 KRTAP26-1Q6PEX3 210 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 LINC00299Q6ZSB3 139 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 TTC9CQ8N5M4 171 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 C10orf105Q8TEF2 133 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 C10orf82Q8WW14 230 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 LINC00052Q96N35 136 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 FAIMQ9NVQ4 179 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 NDUFA12Q9UI09 145 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 PLIN4Q96Q06 1357 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 MUC4Q99102 2169 aa2.83□□□□□ -1.96
USP47-204ENST00000525078 ZNF831Q5JPB2 1677 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 DOT1LQ8TEK3 1739 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 SBF2Q86WG5 1849 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 CCL16O15467 120 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 GYPBP06028 91 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.82□□□□□ -1.96
USP47-204ENST00000525078 PPDPFLQ8WWR9 84 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 Q9H521 79 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 ROBO1Q9Y6N7 1651 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 COL4A2P08572 1712 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 PSME4Q14997 1843 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 ARFGEF1Q9Y6D6 1849 aa2.82□□□□□ -1.96
USP47-204ENST00000525078 MPDZO75970 2070 aa2.81□□□□□ -1.96
USP47-204ENST00000525078 A0A1W2PNU3 283 aaPredicted RBP2.81□□□□□ -1.96
USP47-204ENST00000525078 RHOHQ15669 191 aa2.81□□□□□ -1.96
USP47-204ENST00000525078 TSKUQ8WUA8 353 aa2.81□□□□□ -1.96
USP47-204ENST00000525078 TMEM141Q96I45 108 aa2.81□□□□□ -1.96
USP47-204ENST00000525078 AQP10Q96PS8 301 aa2.81□□□□□ -1.96
USP47-204ENST00000525078 KLK9Q9UKQ9 250 aa2.81□□□□□ -1.96
USP47-204ENST00000525078 MYO9BQ13459 2157 aa2.81□□□□□ -1.96
USP47-204ENST00000525078 FREM3P0C091 2139 aa2.8□□□□□ -1.96
USP47-204ENST00000525078 TMEM30CPA0ZSE6 113 aa2.8□□□□□ -1.96
USP47-204ENST00000525078 IGKCP01834 107 aa2.8□□□□□ -1.96
USP47-204ENST00000525078 IQCJQ1A5X6 159 aa2.8□□□□□ -1.96
USP47-204ENST00000525078 C10orf55Q5SWW7 151 aa2.8□□□□□ -1.96
USP47-204ENST00000525078 PATE1Q8WXA2 126 aa2.8□□□□□ -1.96
USP47-204ENST00000525078 DSCR8Q96T75 97 aa2.8□□□□□ -1.96
USP47-204ENST00000525078 SNHG12Q9BXW3 62 aa2.8□□□□□ -1.96
USP47-204ENST00000525078 TRPM7Q96QT4 1865 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 MPC2O95563 127 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 IGHV3-33P01772 117 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 SLC25A6P12236 298 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 KRTAP10-5P60370 271 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 COA5Q86WW8 74 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 CDC42SE1Q9NRR8 79 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 ALPK3Q96L96 1907 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 TANC1Q9C0D5 1861 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 KIAA1549LQ6ZVL6 1849 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 NRAPQ86VF7 1730 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 ABCA3Q99758 1704 aa2.79□□□□□ -1.96
USP47-204ENST00000525078 COL1A2P08123 1366 aa2.78□□□□□ -1.96
USP47-204ENST00000525078 LTBP2Q14767 1821 aa2.78□□□□□ -1.96
USP47-204ENST00000525078 TCRBV3S1A0A5B6 114 aa2.78□□□□□ -1.96
USP47-204ENST00000525078 UBE2G1P62253 170 aa2.78□□□□□ -1.96
USP47-204ENST00000525078 SNRPFP62306 86 aaKnown RBP2.78□□□□□ -1.96
USP47-204ENST00000525078 RBM3P98179 157 aaKnown RBP2.78□□□□□ -1.96
USP47-204ENST00000525078 SLC48A1Q6P1K1 146 aa2.78□□□□□ -1.96
USP47-204ENST00000525078 QSER1Q2KHR3 1735 aa2.78□□□□□ -1.96
USP47-204ENST00000525078 STRCP1A6NGW2 1772 aa2.77□□□□□ -1.97
USP47-204ENST00000525078 TFF1P04155 84 aa2.77□□□□□ -1.97
USP47-204ENST00000525078 CBLN1P23435 193 aa2.77□□□□□ -1.97
USP47-204ENST00000525078 INSL4Q14641 139 aa2.77□□□□□ -1.97
USP47-204ENST00000525078 LYPD5Q6UWN5 251 aa2.77□□□□□ -1.97
USP47-204ENST00000525078 Q8N8P6 123 aa2.77□□□□□ -1.97
USP47-204ENST00000525078 REG4Q9BYZ8 158 aa2.77□□□□□ -1.97
USP47-204ENST00000525078 AP4S1Q9Y587 144 aa2.77□□□□□ -1.97
USP47-204ENST00000525078 NOTCH3Q9UM47 2321 aa2.77□□□□□ -1.97
USP47-204ENST00000525078 HEATR1Q9H583 2144 aaKnown RBP2.77□□□□□ -1.97
USP47-204ENST00000525078 LY75O60449 1722 aa2.76□□□□□ -1.97
USP47-204ENST00000525078 COL4A5P29400 1685 aa2.76□□□□□ -1.97
USP47-204ENST00000525078 ANK1P16157 1881 aa2.76□□□□□ -1.97
USP47-204ENST00000525078 SSC5DA1L4H1 1573 aa2.76□□□□□ -1.97
USP47-204ENST00000525078 TRBV6-5A0A0K0K1A5 114 aa2.76□□□□□ -1.97
USP47-204ENST00000525078 TRBV6-4A0A1B0GX49 114 aa2.76□□□□□ -1.97
USP47-204ENST00000525078 KRTAP9-6A8MVA2 160 aa2.76□□□□□ -1.97
USP47-204ENST00000525078 TMEM262E9PQX1 116 aa2.76□□□□□ -1.97
USP47-204ENST00000525078 CSAG1Q6PB30 78 aa2.76□□□□□ -1.97
USP47-204ENST00000525078 TMEM106BQ9NUM4 274 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms