RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 MUC2Q02817 5179 aa4.12□□□□□ -1.75
NUP54-218ENST00000515460 STARD9Q9P2P6 4700 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 IGHV3OR15-7A0A075B7D8 119 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 TRAV26-2A0A0B4J265 109 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 SLC25A20O43772 301 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 SRSF10O75494 262 aaKnown RBP4.11□□□□□ -1.75
NUP54-218ENST00000515460 IGKV1D-33P01593 117 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 IGKV1-33P01594 117 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 GATA1P15976 413 aaPredicted RBP4.11□□□□□ -1.75
NUP54-218ENST00000515460 PSMB2P49721 201 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 HBBP68871 147 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 DEFB121Q5J5C9 76 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 CASC10Q5T4H9 136 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 MRPL55Q7Z7F7 128 aaKnown RBP4.11□□□□□ -1.75
NUP54-218ENST00000515460 LINC00643Q86TS7 51 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 ARHGAP5-AS1Q96IT6 56 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 FAM19A4Q96LR4 140 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 C2orf48Q96LS8 159 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 C20orf141Q9NUB4 165 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 PSENENQ9NZ42 101 aa4.11□□□□□ -1.75
NUP54-218ENST00000515460 KLK5Q9Y337 293 aaPredicted RBP4.11□□□□□ -1.75
NUP54-218ENST00000515460 TRBV7-3A0A075B6L6 115 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 TRBV25-1A0A075B6N4 114 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 A0A0A6YYD4 124 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 UBE2L5PA0A1B0GUS4 154 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 PGPA6NDG6 321 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 H3BMM0 161 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 SYNGR2O43760 224 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 OXTP01178 125 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 IGHV3-13P01766 116 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 VPREB1P12018 145 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 MFAP2P55001 183 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 SEC61BP60468 96 aaKnown RBP4.1□□□□□ -1.75
NUP54-218ENST00000515460 HIST1H4AP62805 103 aaKnown RBP4.1□□□□□ -1.75
NUP54-218ENST00000515460 RSPO1Q2MKA7 263 aaPredicted RBP4.1□□□□□ -1.75
NUP54-218ENST00000515460 SP6Q3SY56 376 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 CENPWQ5EE01 88 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 Q6ZRU5 148 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 LINC00173Q6ZV60 143 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 RFESDQ8TAC1 157 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 UBE2WQ96B02 151 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 BORCS8Q96FH0 119 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 ZNF414Q96IQ9 312 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 C1orf147Q96MC9 270 aaPredicted RBP4.1□□□□□ -1.75
NUP54-218ENST00000515460 TRGV9Q99603 122 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 RTL8AQ9BWD3 113 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 LINC00527Q9UJ94 153 aa4.1□□□□□ -1.75
NUP54-218ENST00000515460 DNAH10Q8IVF4 4471 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 PLECQ15149 4684 aaKnown RBP4.09□□□□□ -1.75
NUP54-218ENST00000515460 C3orf84H3BNL1 204 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 H3BT86 120 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 TCL1BO95988 128 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 IGHV1-46P01743 117 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 UBE2D1P51668 147 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 ATP5EP56381 51 aaPredicted RBP4.09□□□□□ -1.75
NUP54-218ENST00000515460 RPL18Q07020 188 aaKnown RBP4.09□□□□□ -1.75
NUP54-218ENST00000515460 SRSF9Q13242 221 aaKnown RBP eCLIP4.09□□□□□ -1.75
NUP54-218ENST00000515460 PAPPA-AS1Q5QFB9 102 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 ZC2HC1BQ5TFG8 222 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 KRTAP5-1Q6L8H4 278 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 PRR15Q8IV56 129 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 LINC00311Q8N616 119 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 SERP2Q8N6R1 65 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 DEFB108BQ8NET1 73 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 CCL17Q92583 94 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 HIST1H4GQ99525 98 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 GFRA4Q9GZZ7 299 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 NXT2Q9NPJ8 142 aaKnown RBP4.09□□□□□ -1.75
NUP54-218ENST00000515460 TMEM167BQ9NRX6 74 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 F11RQ9Y624 299 aaKnown RBP4.09□□□□□ -1.75
NUP54-218ENST00000515460 LHFPL6Q9Y693 200 aa4.09□□□□□ -1.75
NUP54-218ENST00000515460 ARFGEF3Q5TH69 2177 aa4.09□□□□□ -1.76
NUP54-218ENST00000515460 DMBT1Q9UGM3 2413 aaPredicted RBP4.09□□□□□ -1.76
NUP54-218ENST00000515460 IGKV1D-43A0A0B4J1Z2 117 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 hADV29S1A0JD25 119 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 H3BTX0 84 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 NGFP01138 241 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 FRMD6-AS1P0C7T7 363 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 CDAP32320 146 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 ZNF56Q15929 161 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 C5orf38Q86SI9 138 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 PCP2Q8IVA1 136 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 VKORC1L1Q8N0U8 176 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 KLF14Q8TD94 323 aaPredicted RBP4.08□□□□□ -1.76
NUP54-218ENST00000515460 DSCR8Q96T75 97 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 NPCDR1Q9BY65 106 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 DPH3P1Q9H4G8 78 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 PLEKHA3Q9HB20 300 aa4.08□□□□□ -1.76
NUP54-218ENST00000515460 TRBV19A0A075B6N1 114 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 LOC107984156A0A0G2JMH3 177 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 TRBV7-6A0A0J9YX20 115 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 TRBV10-2A0A0K0K1G8 114 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 C19orf71A6NCJ1 209 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 KNCNA6PVL3 124 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 USP17L23D6RBM5 183 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 P01737 135 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 HBDP02042 147 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 IGHV4-38-2P0DP08 117 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 ZNF32P17041 273 aa4.07□□□□□ -1.76
NUP54-218ENST00000515460 BRWD1-AS2P59051 145 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 653.6 ms