RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 KIF25-AS1Q9Y6Z4 181 aa6.79□□□□□ -1.32
TOPBP1-209ENST00000513818 TRBV6-4A0A1B0GX49 114 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 SMIM27A0A1W2PRY6 76 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 F5H697 171 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 TRGC1P0CF51 173 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 SMIM17P0DL12 118 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 SRIP30626 198 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 LINC00315P59091 139 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 SLAQ13239 276 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 SUMO4Q6EEV6 95 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 MRPL54Q6P161 138 aaKnown RBP6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 BORCS7Q96B45 105 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 GFRA4Q9GZZ7 299 aa6.78□□□□□ -1.32
TOPBP1-209ENST00000513818 TRAV26-2A0A0B4J265 109 aa6.77□□□□□ -1.33
TOPBP1-209ENST00000513818 A0A1B0GUT8 65 aa6.77□□□□□ -1.33
TOPBP1-209ENST00000513818 H3BNG1 76 aa6.77□□□□□ -1.33
TOPBP1-209ENST00000513818 ESRGQ1W209 222 aa6.77□□□□□ -1.33
TOPBP1-209ENST00000513818 LGALS9CQ6DKI2 356 aa6.77□□□□□ -1.33
TOPBP1-209ENST00000513818 PRADC1Q9BSG0 188 aa6.77□□□□□ -1.33
TOPBP1-209ENST00000513818 NAT8BQ9UHF3 227 aa6.77□□□□□ -1.33
TOPBP1-209ENST00000513818 CARHSP1Q9Y2V2 147 aaKnown RBP6.77□□□□□ -1.33
TOPBP1-209ENST00000513818 LINC00588Q9Y4M8 146 aa6.77□□□□□ -1.33
TOPBP1-209ENST00000513818 IGLV2-18A0A075B6J9 118 aa6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 PPP1R2P9O14990 202 aa6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 CIDEAO60543 219 aa6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 MT-ND4LP03901 98 aa6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 LINC00694P0DN24 101 aa6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 CAMPP49913 170 aa6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 RAB4BP61018 213 aa6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 MRPL23Q16540 153 aaKnown RBP6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 C10orf91Q5T1B1 145 aa6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 DPH3P1Q9H4G8 78 aa6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 FAM30AQ9NZY2 134 aa6.76□□□□□ -1.33
TOPBP1-209ENST00000513818 FAT2Q9NYQ8 4349 aa6.75□□□□□ -1.33
TOPBP1-209ENST00000513818 IGHV3-38A0A0C4DH36 116 aa6.75□□□□□ -1.33
TOPBP1-209ENST00000513818 FAM231BA6NCW3 169 aa6.75□□□□□ -1.33
TOPBP1-209ENST00000513818 APOC3P02656 99 aa6.75□□□□□ -1.33
TOPBP1-209ENST00000513818 RIGQ13278 110 aa6.75□□□□□ -1.33
TOPBP1-209ENST00000513818 NEGR1Q7Z3B1 354 aa6.75□□□□□ -1.33
TOPBP1-209ENST00000513818 AMN1Q8IY45 258 aa6.75□□□□□ -1.33
TOPBP1-209ENST00000513818 NEXN-AS1Q8NBZ9 246 aa6.75□□□□□ -1.33
TOPBP1-209ENST00000513818 ZNRF2Q8NHG8 242 aa6.75□□□□□ -1.33
TOPBP1-209ENST00000513818 DEFB104AQ8WTQ1 72 aa6.75□□□□□ -1.33
TOPBP1-209ENST00000513818 FRAS1Q86XX4 4008 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 C7orf77A4D0Y5 90 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 SMKR1H3BMG3 65 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 M0R2N4 97 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 GAS8-AS1O95177 125 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 NCR2O95944 276 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 CCL18P55774 89 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 TIRAPP58753 221 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 LYPD5Q6UWN5 251 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 SMIM15Q7Z3B0 74 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 RPL39LQ96EH5 51 aaKnown RBP6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 RNF185Q96GF1 192 aa6.74□□□□□ -1.33
TOPBP1-209ENST00000513818 DNAH11Q96DT5 4516 aa6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 A0A1B0GXF2 115 aa6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 M0QY20 66 aa6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 RPL36AP83881 106 aaKnown RBP6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 WFDC10BQ8IUB3 73 aa6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 GATD1Q8NB37 220 aa6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 ATP6V0E2Q8NHE4 81 aa6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 RPL36ALQ969Q0 106 aaKnown RBP6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 TMEM191AQ9H0A3 160 aa6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 RPS10P5Q9NQ39 176 aa6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 MRPS16Q9Y3D3 137 aaKnown RBP6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 URGCP-MRPS24S4R325 110 aa6.73□□□□□ -1.33
TOPBP1-209ENST00000513818 TRBV10-1A0A0K0K1A3 114 aa6.72□□□□□ -1.33
TOPBP1-209ENST00000513818 UBE2D3P61077 147 aa6.72□□□□□ -1.33
TOPBP1-209ENST00000513818 UBE2D2P62837 147 aa6.72□□□□□ -1.33
TOPBP1-209ENST00000513818 HBBP68871 147 aa6.72□□□□□ -1.33
TOPBP1-209ENST00000513818 NDUFA5Q16718 116 aa6.72□□□□□ -1.33
TOPBP1-209ENST00000513818 RASL11AQ6T310 242 aa6.72□□□□□ -1.33
TOPBP1-209ENST00000513818 ATRAIDQ6UW56 229 aa6.72□□□□□ -1.33
TOPBP1-209ENST00000513818 TRBV7-3A0A075B6L6 115 aa6.71□□□□□ -1.34
TOPBP1-209ENST00000513818 H7C1H1 209 aa6.71□□□□□ -1.34
TOPBP1-209ENST00000513818 RAB4AP20338 218 aa6.71□□□□□ -1.34
TOPBP1-209ENST00000513818 RPS10P46783 165 aaKnown RBP6.71□□□□□ -1.34
TOPBP1-209ENST00000513818 RHEBQ15382 184 aa6.71□□□□□ -1.34
TOPBP1-209ENST00000513818 Q8N3U1 123 aa6.71□□□□□ -1.34
TOPBP1-209ENST00000513818 MRPL51Q4U2R6 128 aaKnown RBP6.7□□□□□ -1.34
TOPBP1-209ENST00000513818 OR10J3Q5JRS4 329 aa6.7□□□□□ -1.34
TOPBP1-209ENST00000513818 SVBPQ8N300 66 aa6.7□□□□□ -1.34
TOPBP1-209ENST00000513818 UPK3BQ9BT76 320 aa6.7□□□□□ -1.34
TOPBP1-209ENST00000513818 KRTAP1-5Q9BYS1 174 aa6.7□□□□□ -1.34
TOPBP1-209ENST00000513818 GTSF1LQ9H1H1 148 aa6.7□□□□□ -1.34
TOPBP1-209ENST00000513818 TNFRSF18Q9Y5U5 241 aa6.7□□□□□ -1.34
TOPBP1-209ENST00000513818 B5MCH6 92 aa6.69□□□□□ -1.34
TOPBP1-209ENST00000513818 SNAPINO95295 136 aa6.69□□□□□ -1.34
TOPBP1-209ENST00000513818 FAM104BQ5XKR9 115 aa6.69□□□□□ -1.34
TOPBP1-209ENST00000513818 KCNIP4Q6PIL6 250 aa6.69□□□□□ -1.34
TOPBP1-209ENST00000513818 SH2D6Q7Z4S9 175 aa6.69□□□□□ -1.34
TOPBP1-209ENST00000513818 ATP5L2Q7Z4Y8 100 aa6.69□□□□□ -1.34
TOPBP1-209ENST00000513818 BTF3L4Q96K17 158 aa6.69□□□□□ -1.34
TOPBP1-209ENST00000513818 Q9H8V8 135 aa6.69□□□□□ -1.34
TOPBP1-209ENST00000513818 NIT2Q9NQR4 276 aa6.69□□□□□ -1.34
TOPBP1-209ENST00000513818 DYNC1H1Q14204 4646 aaKnown RBP6.69□□□□□ -1.34
TOPBP1-209ENST00000513818 A0A087WWC5 75 aa6.68□□□□□ -1.34
TOPBP1-209ENST00000513818 A0A1B0GW15 77 aa6.68□□□□□ -1.34
TOPBP1-209ENST00000513818 D6R8Y8 96 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms