RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 YLPM1P49750 1951 aaKnown RBP3.19□□□□□ -1.9
VCAN-209ENST00000513016 WIPF3A6NGB9 483 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 NCR3O14931 201 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 BAALC-AS2P0C853 105 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 C20orf203Q8NBC4 194 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 HIGD2AQ9BW72 106 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 HELZP42694 1942 aaKnown RBP3.19□□□□□ -1.9
VCAN-209ENST00000513016 LOC107984640A0A0U1RRK4 108 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 CEND1Q8N111 149 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 UBE2D4Q9Y2X8 147 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 FAM167A-AS1Q96KT0 104 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 MALRD1Q5VYJ5 2156 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 CRYGBP07316 175 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 PLXND1Q9Y4D7 1925 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 CHCHD7Q9BUK0 85 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 COL4A4P53420 1690 aaPredicted RBP3.19□□□□□ -1.9
VCAN-209ENST00000513016 POLEQ07864 2286 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.18□□□□□ -1.9
VCAN-209ENST00000513016 CRYBA4P53673 196 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 LINC01620Q4KN68 170 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 TOMM6Q96B49 74 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 DOCK10Q96BY6 2186 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 IGLV4-69A0A075B6H9 119 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 SEC61GP60059 68 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 PPDPFLQ8WWR9 84 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 ZNF407Q9C0G0 2248 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 GTF3C1Q12789 2109 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 TRBV6-8A0A0A6YYG3 113 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 C11orf86A6NJI1 115 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 ACYP1P07311 99 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 CREBBPQ92793 2442 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 IGKV2D-26A0A0A0MRZ7 120 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 TINCRA0A1B0GVN0 87 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 A0A1B0GX51 115 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 NPSP0C0P6 89 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 Q8N6K4 173 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 DOCK7Q96N67 2140 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 SPTBN1Q01082 2364 aaKnown RBP3.18□□□□□ -1.9
VCAN-209ENST00000513016 A0A0J9YWU9 116 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 IGLV1-40P01703 118 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 NOTCH4Q99466 2003 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 KRTAP10-9P60411 292 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 MRGPRG-AS1Q2M3A8 158 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 SS18L2Q9UHA2 77 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 ZNF580Q9UK33 172 aa3.18□□□□□ -1.9
VCAN-209ENST00000513016 GATA1P15976 413 aaPredicted RBP3.18□□□□□ -1.9
VCAN-209ENST00000513016 C1orf134Q5TEV5 83 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 DOPEY2Q9Y3R5 2298 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 MUC7Q8TAX7 377 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 C9orf85Q96MD7 179 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 MED12Q93074 2177 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 H0Y9J4 135 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 SMR3AQ99954 134 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 ZGRF1Q86YA3 2104 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 K7EN84 100 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 TMEM256-PLSCR3K7ERE1 68 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 C22orf34Q6ZV56 151 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 ZNF295-AS1Q8N0V1 137 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 MIR7-3HGQ8N6C7 128 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 DKK2Q9UBU2 259 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 PTPRQQ9UMZ3 2332 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 PHF3Q92576 2039 aaKnown RBP3.17□□□□□ -1.9
VCAN-209ENST00000513016 RBM3P98179 157 aaKnown RBP3.17□□□□□ -1.9
VCAN-209ENST00000513016 MSRB1Q9NZV6 116 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 PKDREJQ9NTG1 2253 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 C9orf118A6NHY6 69 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 BBC3Q96PG8 261 aaPredicted RBP3.17□□□□□ -1.9
VCAN-209ENST00000513016 E7EUB6 86 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 FRMD6-AS1P0C7T7 363 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 UBE2D3P61077 147 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 PIK3CD-AS1Q5SR53 167 aa3.17□□□□□ -1.9
VCAN-209ENST00000513016 F8W1H4 67 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 NANOS2P60321 138 aaKnown RBP3.16□□□□□ -1.9
VCAN-209ENST00000513016 NAA38Q9BRA0 125 aaKnown RBP3.16□□□□□ -1.9
VCAN-209ENST00000513016 ZFAND3Q9H8U3 227 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 SPANXCQ9NY87 97 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 NDUFC2O95298 119 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 IGLV5-52A0A0A0MRZ9 124 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 C19orf71A6NCJ1 209 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 C12orf74Q32Q52 190 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 BAALCQ8WXS3 180 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 TCL1BO95988 128 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 IGLV1-51P01701 117 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 DEFB1P60022 68 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 MUSTN1Q8IVN3 82 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 MPDZO75970 2070 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 E9PLD3 99 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 TMEM258P61165 79 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 Q6ZUT4 128 aa3.16□□□□□ -1.9
VCAN-209ENST00000513016 IGKV1D-37A0A075B6S9 117 aa3.15□□□□□ -1.9
VCAN-209ENST00000513016 IBA57-AS1B1ANH7 110 aa3.15□□□□□ -1.9
VCAN-209ENST00000513016 RPL28P46779 137 aaKnown RBP3.15□□□□□ -1.9
VCAN-209ENST00000513016 CRIP2P52943 208 aaPredicted RBP3.15□□□□□ -1.9
VCAN-209ENST00000513016 CFAP126Q5VTH2 177 aa3.15□□□□□ -1.9
VCAN-209ENST00000513016 CD164L2Q6UWJ8 174 aa3.15□□□□□ -1.9
VCAN-209ENST00000513016 FAM19A5Q7Z5A7 132 aaPredicted RBP3.15□□□□□ -1.9
VCAN-209ENST00000513016 LYPD6BQ8NI32 183 aa3.15□□□□□ -1.9
VCAN-209ENST00000513016 C10orf142B7Z368 130 aa3.15□□□□□ -1.9
VCAN-209ENST00000513016 F8WDY8 70 aa3.15□□□□□ -1.9
VCAN-209ENST00000513016 BRI3O95415 125 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms