RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 A0A0J9YY99 117 aa6.34□□□□□ -1.39
LIMCH1-216ENST00000512820 COX8CQ7Z4L0 72 aa6.34□□□□□ -1.39
LIMCH1-216ENST00000512820 VPREB3Q9UKI3 123 aa6.34□□□□□ -1.39
LIMCH1-216ENST00000512820 CSPG4Q6UVK1 2322 aa6.34□□□□□ -1.39
LIMCH1-216ENST00000512820 ICOSQ9Y6W8 199 aa6.34□□□□□ -1.39
LIMCH1-216ENST00000512820 SLURP1P55000 103 aa6.34□□□□□ -1.4
LIMCH1-216ENST00000512820 SLC25A29Q8N8R3 303 aa6.34□□□□□ -1.4
LIMCH1-216ENST00000512820 OVOL2Q9BRP0 275 aa6.34□□□□□ -1.4
LIMCH1-216ENST00000512820 ACACBO00763 2458 aa6.34□□□□□ -1.4
LIMCH1-216ENST00000512820 IGHV4OR15-8A0A075B7B6 117 aa6.33□□□□□ -1.4
LIMCH1-216ENST00000512820 A0A087WW49 117 aa6.33□□□□□ -1.4
LIMCH1-216ENST00000512820 NSUN5P1Q3KNT7 163 aa6.33□□□□□ -1.4
LIMCH1-216ENST00000512820 TMEM243Q9BU79 118 aa6.33□□□□□ -1.4
LIMCH1-216ENST00000512820 APRG1Q8IVJ8 170 aa6.33□□□□□ -1.4
LIMCH1-216ENST00000512820 ZMAT4Q9H898 229 aa6.33□□□□□ -1.4
LIMCH1-216ENST00000512820 PRRC2CQ9Y520 2896 aaKnown RBP6.33□□□□□ -1.4
LIMCH1-216ENST00000512820 TRBV7-3A0A075B6L6 115 aa6.33□□□□□ -1.4
LIMCH1-216ENST00000512820 IGHV3-30-3P0DP02 117 aa6.33□□□□□ -1.4
LIMCH1-216ENST00000512820 DAND5Q8N907 189 aa6.33□□□□□ -1.4
LIMCH1-216ENST00000512820 GAGE7O76087 117 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 GAGE12FP0CL80 117 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 GAGE12GP0CL81 117 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 GAGE12IP0CL82 117 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 INAFM2P0DMQ5 153 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 RNASE3P12724 160 aaKnown RBP6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 CEMP1Q6PRD7 247 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 B5MCH6 92 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 HTN3P15516 51 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 PFN2P35080 140 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 LAMA3Q16787 3333 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 DEFB130BP0DP73 79 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 DEFB130AP0DP74 79 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 GAGE6Q13070 117 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 PCSK5Q92824 1860 aa6.32□□□□□ -1.4
LIMCH1-216ENST00000512820 IGHV1-58A0A0C4DH39 117 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 TRBV10-2A0A0K0K1G8 114 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 IGHG4P01861 327 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 MT-ATP8P03928 68 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 CDSNQ15517 529 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 Q6ZUT4 128 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 DNAJC30Q96LL9 226 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 IGF2RP11717 2491 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 P0DMU3 169 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 FAM231AP0DMU4 169 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 FAM231CP0DMU5 169 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 CUL9Q8IWT3 2517 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 TRAV26-1A0A087WT03 109 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 A0A0J9YXY3 114 aa6.31□□□□□ -1.4
LIMCH1-216ENST00000512820 LGALS9O00182 355 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 ZNF22P17026 224 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 TRAV13-2A0A0B4J235 113 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 M0QY20 66 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 S100A7L2Q5SY68 101 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 CLEC2BQ92478 149 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 PSMG3-AS1Q96PY0 264 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 A0A0B4J2C4 111 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 C19orf84I3L1E1 186 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 INSL3P51460 131 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 HIST1H4AP62805 103 aaKnown RBP6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 NRGNQ92686 78 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 SS18L2Q9UHA2 77 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 TMEM223A0PJW6 202 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 BAALC-AS2P0C853 105 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 ODF3Q96PU9 254 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 EDA2RQ9HAV5 297 aa6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 NOP10Q9NPE3 64 aaKnown RBP6.3□□□□□ -1.4
LIMCH1-216ENST00000512820 UNC80Q8N2C7 3258 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 IGLV2-18A0A075B6J9 118 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 TRBV27A0A0K0K1C4 114 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 SS18Q15532 418 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 ATRXP46100 2492 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 RAI1Q7Z5J4 1906 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 IGLV4-3A0A075B6K6 122 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 TMEM89A2RUT3 159 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 K7EQG2 157 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 POLR2KP53803 58 aaKnown RBP6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 C9orf153Q5TBE3 101 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 CFAP126Q5VTH2 177 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 NFE4Q86UQ8 179 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 IGHV3-30P01768 117 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 IGHV3-30-5P0DP03 117 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 VSIG2Q96IQ7 327 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 RPL32P62910 135 aaKnown RBP6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 RNF152Q8N8N0 203 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 Q96MF0 132 aa6.29□□□□□ -1.4
LIMCH1-216ENST00000512820 Q6ZS46 218 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 SVIPQ8NHG7 77 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 NACAE9PAV3 2078 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 CACNA1AO00555 2505 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 TRBV6-5A0A0K0K1A5 114 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 H3BT86 120 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 SPATA25Q9BR10 227 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 KLLNB2CW77 178 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 HERV-K104P63124 156 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 IGHV3-33P01772 117 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 MIAQ16674 131 aa6.28□□□□□ -1.4
LIMCH1-216ENST00000512820 SOCS3O14543 225 aa6.27□□□□□ -1.41
LIMCH1-216ENST00000512820 TMEM61Q8N0U2 210 aa6.27□□□□□ -1.41
LIMCH1-216ENST00000512820 TRANK1O15050 2925 aa6.27□□□□□ -1.41
LIMCH1-216ENST00000512820 CEP295Q9C0D2 2601 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms