RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 ZNF256Q9Y2P7 627 aaPredicted RBP12.73□□□□□ -0.37
SQSTM1-211ENST00000506690 FAM223BA6NKX1 122 aa12.72□□□□□ -0.37
SQSTM1-211ENST00000506690 FAM223AQ8IWN6 122 aa12.72□□□□□ -0.37
SQSTM1-211ENST00000506690 IGF2RP11717 2491 aa12.72□□□□□ -0.37
SQSTM1-211ENST00000506690 UBE2E1P51965 193 aa12.72□□□□□ -0.37
SQSTM1-211ENST00000506690 H3BT86 120 aa12.71□□□□□ -0.37
SQSTM1-211ENST00000506690 NDUFA4O00483 81 aa12.71□□□□□ -0.37
SQSTM1-211ENST00000506690 GRNP28799 593 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-211ENST00000506690 C19orf54Q5BKX5 351 aa12.71□□□□□ -0.37
SQSTM1-211ENST00000506690 C5orf56Q8N8D9 126 aa12.71□□□□□ -0.37
SQSTM1-211ENST00000506690 ZNF580Q9UK33 172 aa12.71□□□□□ -0.37
SQSTM1-211ENST00000506690 TLN1Q9Y490 2541 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-211ENST00000506690 FAM240AA0A1B0GVK7 77 aa12.71□□□□□ -0.38
SQSTM1-211ENST00000506690 ICOSQ9Y6W8 199 aa12.71□□□□□ -0.38
SQSTM1-211ENST00000506690 A0A0J9YXV3 536 aa12.7□□□□□ -0.38
SQSTM1-211ENST00000506690 M0QY20 66 aa12.7□□□□□ -0.38
SQSTM1-211ENST00000506690 TRBV12-3P01733 135 aa12.7□□□□□ -0.38
SQSTM1-211ENST00000506690 SAA4P35542 130 aa12.7□□□□□ -0.38
SQSTM1-211ENST00000506690 DEFB121Q5J5C9 76 aa12.7□□□□□ -0.38
SQSTM1-211ENST00000506690 C20orf203Q8NBC4 194 aa12.7□□□□□ -0.38
SQSTM1-211ENST00000506690 TRAV41A0A0B4J266 112 aa12.69□□□□□ -0.38
SQSTM1-211ENST00000506690 KLRB1Q12918 225 aa12.69□□□□□ -0.38
SQSTM1-211ENST00000506690 C11orf71Q6IPW1 123 aa12.69□□□□□ -0.38
SQSTM1-211ENST00000506690 IGLV4-3A0A075B6K6 122 aa12.68□□□□□ -0.38
SQSTM1-211ENST00000506690 IGHV3-30-3P0DP02 117 aa12.68□□□□□ -0.38
SQSTM1-211ENST00000506690 RPL11P62913 178 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-211ENST00000506690 MEIG1Q5JSS6 88 aa12.68□□□□□ -0.38
SQSTM1-211ENST00000506690 FAM74A4Q5TZK3 123 aa12.68□□□□□ -0.38
SQSTM1-211ENST00000506690 CCL21O00585 134 aa12.67□□□□□ -0.38
SQSTM1-211ENST00000506690 SPANXDQ9BXN6 97 aa12.67□□□□□ -0.38
SQSTM1-211ENST00000506690 SPANXCQ9NY87 97 aa12.67□□□□□ -0.38
SQSTM1-211ENST00000506690 PIEZO1Q92508 2521 aa12.67□□□□□ -0.38
SQSTM1-211ENST00000506690 RELNP78509 3460 aa12.67□□□□□ -0.38
SQSTM1-211ENST00000506690 TRBV7-7A0A0K0K1E9 115 aa12.67□□□□□ -0.38
SQSTM1-211ENST00000506690 C9orf85Q96MD7 179 aa12.67□□□□□ -0.38
SQSTM1-211ENST00000506690 LINC00527Q9UJ94 153 aa12.67□□□□□ -0.38
SQSTM1-211ENST00000506690 HRNRQ86YZ3 2850 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-211ENST00000506690 ADARB2-AS1A8MUL3 147 aa12.66□□□□□ -0.38
SQSTM1-211ENST00000506690 COX6CP09669 75 aa12.66□□□□□ -0.38
SQSTM1-211ENST00000506690 ZNF56Q15929 161 aa12.66□□□□□ -0.38
SQSTM1-211ENST00000506690 FBXL19-AS1Q494R0 122 aa12.66□□□□□ -0.38
SQSTM1-211ENST00000506690 ADAMTSL4-AS1Q5T5F5 129 aa12.66□□□□□ -0.38
SQSTM1-211ENST00000506690 NCOR2Q9Y618 2525 aa12.66□□□□□ -0.38
SQSTM1-211ENST00000506690 IGKV3-7A0A075B6H7 116 aa12.66□□□□□ -0.38
SQSTM1-211ENST00000506690 LST1O00453 97 aa12.66□□□□□ -0.38
SQSTM1-211ENST00000506690 MED13LQ71F56 2210 aa12.65□□□□□ -0.38
SQSTM1-211ENST00000506690 PRSS2P07478 247 aa12.65□□□□□ -0.38
SQSTM1-211ENST00000506690 SPXQ9BT56 116 aa12.65□□□□□ -0.38
SQSTM1-211ENST00000506690 TIMM21Q9BVV7 248 aa12.65□□□□□ -0.38
SQSTM1-211ENST00000506690 SPTA1P02549 2419 aa12.65□□□□□ -0.38
SQSTM1-211ENST00000506690 DUX3Q96PT4 197 aa12.64□□□□□ -0.39
SQSTM1-211ENST00000506690 PRRC2AP48634 2157 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-211ENST00000506690 TRAV12-3A0A0B4J271 114 aa12.64□□□□□ -0.39
SQSTM1-211ENST00000506690 IGHV3-16A0A0C4DH30 117 aa12.64□□□□□ -0.39
SQSTM1-211ENST00000506690 I3L3M4 83 aa12.64□□□□□ -0.39
SQSTM1-211ENST00000506690 ASH1LQ9NR48 2969 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-211ENST00000506690 MRPS36P82909 103 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-211ENST00000506690 CLEC2BQ92478 149 aa12.63□□□□□ -0.39
SQSTM1-211ENST00000506690 CHCHD5Q9BSY4 110 aa12.63□□□□□ -0.39
SQSTM1-211ENST00000506690 MIAQ16674 131 aa12.63□□□□□ -0.39
SQSTM1-211ENST00000506690 TMEM219Q86XT9 240 aa12.63□□□□□ -0.39
SQSTM1-211ENST00000506690 FAM104AQ969W3 186 aa12.63□□□□□ -0.39
SQSTM1-211ENST00000506690 RHPN1-AS1Q9BWJ2 59 aa12.63□□□□□ -0.39
SQSTM1-211ENST00000506690 ZFHX3Q15911 3703 aa12.62□□□□□ -0.39
SQSTM1-211ENST00000506690 CHD8Q9HCK8 2581 aa12.62□□□□□ -0.39
SQSTM1-211ENST00000506690 TRAV8-3A0A0A6YYJ7 113 aa12.62□□□□□ -0.39
SQSTM1-211ENST00000506690 Q6ZSV7 163 aa12.62□□□□□ -0.39
SQSTM1-211ENST00000506690 MOB4Q9Y3A3 225 aa12.62□□□□□ -0.39
SQSTM1-211ENST00000506690 TRGV11A0A075B6L2 103 aa12.61□□□□□ -0.39
SQSTM1-211ENST00000506690 IGHV1-58A0A0C4DH39 117 aa12.61□□□□□ -0.39
SQSTM1-211ENST00000506690 NPFFO15130 113 aa12.61□□□□□ -0.39
SQSTM1-211ENST00000506690 TMEM61Q8N0U2 210 aa12.61□□□□□ -0.39
SQSTM1-211ENST00000506690 LINC01587Q99440 93 aa12.61□□□□□ -0.39
SQSTM1-211ENST00000506690 TMEM126AQ9H061 195 aa12.61□□□□□ -0.39
SQSTM1-211ENST00000506690 PYGO1Q9Y3Y4 419 aa12.61□□□□□ -0.39
SQSTM1-211ENST00000506690 NDUFA12Q9UI09 145 aa12.61□□□□□ -0.39
SQSTM1-211ENST00000506690 TNFRSF18Q9Y5U5 241 aa12.6□□□□□ -0.39
SQSTM1-211ENST00000506690 CDSNQ15517 529 aa12.6□□□□□ -0.39
SQSTM1-211ENST00000506690 BRI3O95415 125 aa12.59□□□□□ -0.39
SQSTM1-211ENST00000506690 LY6DQ14210 128 aa12.59□□□□□ -0.39
SQSTM1-211ENST00000506690 ADORA2A-AS1P86434 159 aa12.59□□□□□ -0.39
SQSTM1-211ENST00000506690 TMEM101Q96IK0 257 aa12.59□□□□□ -0.39
SQSTM1-211ENST00000506690 USMG5Q96IX5 58 aa12.59□□□□□ -0.39
SQSTM1-211ENST00000506690 ATRXP46100 2492 aa12.58□□□□□ -0.39
SQSTM1-211ENST00000506690 IGHV3-11P01762 117 aa12.58□□□□□ -0.4
SQSTM1-211ENST00000506690 DCANP1Q8TF63 244 aa12.58□□□□□ -0.4
SQSTM1-211ENST00000506690 VSIG2Q96IQ7 327 aa12.58□□□□□ -0.4
SQSTM1-211ENST00000506690 IMUPQ9GZP8 106 aa12.58□□□□□ -0.4
SQSTM1-211ENST00000506690 CD28P10747 220 aa12.58□□□□□ -0.4
SQSTM1-211ENST00000506690 NBASA2RRP1 2371 aa12.57□□□□□ -0.4
SQSTM1-211ENST00000506690 ID1P41134 155 aa12.57□□□□□ -0.4
SQSTM1-211ENST00000506690 DAZ1Q9NQZ3 744 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-211ENST00000506690 NPC2P61916 151 aa12.57□□□□□ -0.4
SQSTM1-211ENST00000506690 PRORYQ9H606 182 aa12.57□□□□□ -0.4
SQSTM1-211ENST00000506690 ACYP1P07311 99 aa12.56□□□□□ -0.4
SQSTM1-211ENST00000506690 YAE1D1Q9NRH1 226 aa12.56□□□□□ -0.4
SQSTM1-211ENST00000506690 COL6A6A6NMZ7 2263 aa12.56□□□□□ -0.4
SQSTM1-211ENST00000506690 H3BUA1 57 aa12.56□□□□□ -0.4
SQSTM1-211ENST00000506690 TIMM17BO60830 172 aa12.55□□□□□ -0.4
SQSTM1-211ENST00000506690 TINCRA0A1B0GVN0 87 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms