RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 SSC5DA1L4H1 1573 aa0.33□□□□□ -2.36
SMC4-225ENST00000497203 MYOM3Q5VTT5 1437 aa0.33□□□□□ -2.36
SMC4-225ENST00000497203 NMBP08949 121 aa0.33□□□□□ -2.36
SMC4-225ENST00000497203 Q6ZRX8 168 aa0.33□□□□□ -2.36
SMC4-225ENST00000497203 COPS9Q8WXC6 57 aa0.33□□□□□ -2.36
SMC4-225ENST00000497203 MYH9P35579 1960 aaKnown RBP0.33□□□□□ -2.36
SMC4-225ENST00000497203 SPEF2Q9C093 1822 aa0.32□□□□□ -2.36
SMC4-225ENST00000497203 MAST4O15021 2626 aa0.32□□□□□ -2.36
SMC4-225ENST00000497203 TRGV1A0A0A0MS02 117 aa0.32□□□□□ -2.36
SMC4-225ENST00000497203 APOC4-APOC2K7ER74 178 aa0.32□□□□□ -2.36
SMC4-225ENST00000497203 ARPC4P59998 168 aa0.32□□□□□ -2.36
SMC4-225ENST00000497203 S100A12P80511 92 aa0.32□□□□□ -2.36
SMC4-225ENST00000497203 INSL4Q14641 139 aa0.32□□□□□ -2.36
SMC4-225ENST00000497203 CCDC58Q4VC31 144 aa0.32□□□□□ -2.36
SMC4-225ENST00000497203 GRIN2AQ12879 1464 aa0.32□□□□□ -2.36
SMC4-225ENST00000497203 IGF2RP11717 2491 aa0.31□□□□□ -2.36
SMC4-225ENST00000497203 ZNF518AQ6AHZ1 1483 aa0.31□□□□□ -2.36
SMC4-225ENST00000497203 TRBV10-3A0A0K0K1G6 114 aa0.31□□□□□ -2.36
SMC4-225ENST00000497203 FAM92AA1XBS5 289 aa0.31□□□□□ -2.36
SMC4-225ENST00000497203 GCHFRP30047 84 aa0.31□□□□□ -2.36
SMC4-225ENST00000497203 SPTSSBQ8NFR3 76 aa0.31□□□□□ -2.36
SMC4-225ENST00000497203 DPH3Q96FX2 82 aa0.31□□□□□ -2.36
SMC4-225ENST00000497203 F8P00451 2351 aa0.31□□□□□ -2.36
SMC4-225ENST00000497203 ZFYVE26Q68DK2 2539 aa0.3□□□□□ -2.36
SMC4-225ENST00000497203 POLQO75417 2590 aa0.3□□□□□ -2.36
SMC4-225ENST00000497203 SIPA1L3O60292 1781 aaPredicted RBP0.3□□□□□ -2.36
SMC4-225ENST00000497203 PIGBOS1A0A0B4J2F0 54 aa0.3□□□□□ -2.36
SMC4-225ENST00000497203 SMIM6P0DI80 62 aa0.3□□□□□ -2.36
SMC4-225ENST00000497203 CCL8P80075 99 aa0.3□□□□□ -2.36
SMC4-225ENST00000497203 Q5BKY6 102 aa0.3□□□□□ -2.36
SMC4-225ENST00000497203 S100A7L2Q5SY68 101 aa0.3□□□□□ -2.36
SMC4-225ENST00000497203 WFDC6Q9BQY6 131 aa0.3□□□□□ -2.36
SMC4-225ENST00000497203 LRRC37A3O60309 1634 aa0.3□□□□□ -2.36
SMC4-225ENST00000497203 PIEZO1Q92508 2521 aa0.3□□□□□ -2.36
SMC4-225ENST00000497203 CLPSL1A2RUU4 121 aa0.29□□□□□ -2.36
SMC4-225ENST00000497203 SPINK1P00995 79 aa0.29□□□□□ -2.36
SMC4-225ENST00000497203 SELENOWP63302 87 aa0.29□□□□□ -2.36
SMC4-225ENST00000497203 SEC11CQ9BY50 192 aa0.29□□□□□ -2.36
SMC4-225ENST00000497203 NWD2Q9ULI1 1742 aa0.28□□□□□ -2.36
SMC4-225ENST00000497203 SYNE1Q8NF91 8797 aaKnown RBP0.28□□□□□ -2.36
SMC4-225ENST00000497203 PDCD10Q9BUL8 212 aa0.28□□□□□ -2.36
SMC4-225ENST00000497203 IFT140Q96RY7 1462 aa0.28□□□□□ -2.37
SMC4-225ENST00000497203 Q5VV11 94 aa0.27□□□□□ -2.37
SMC4-225ENST00000497203 BAGE3Q86Y29 109 aa0.27□□□□□ -2.37
SMC4-225ENST00000497203 FAM213BQ8TBF2 198 aa0.27□□□□□ -2.37
SMC4-225ENST00000497203 ARL11Q969Q4 196 aa0.27□□□□□ -2.37
SMC4-225ENST00000497203 LINC00312Q9Y6C7 94 aa0.27□□□□□ -2.37
SMC4-225ENST00000497203 ASXL3Q9C0F0 2248 aa0.27□□□□□ -2.37
SMC4-225ENST00000497203 BICRAQ9NZM4 1560 aa0.27□□□□□ -2.37
SMC4-225ENST00000497203 TRAV1-2A0A0B4J238 106 aa0.26□□□□□ -2.37
SMC4-225ENST00000497203 HMGN1P05114 100 aa0.26□□□□□ -2.37
SMC4-225ENST00000497203 TSC22D3Q99576 134 aa0.26□□□□□ -2.37
SMC4-225ENST00000497203 MYH8P13535 1937 aa0.26□□□□□ -2.37
SMC4-225ENST00000497203 OTOGQ6ZRI0 2925 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 GOLGA3Q08378 1498 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 FAM25AB3EWG3 89 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 FAM25CB3EWG5 89 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 FAM25GB3EWG6 89 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 PIN1P1O15428 100 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 NDUFA2O43678 99 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 HIST1H1DP16402 221 aaKnown RBP0.25□□□□□ -2.37
SMC4-225ENST00000497203 C12orf73Q69YU5 71 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 UBE2DNLQ8IWF7 75 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 LINC00470Q9BZP3 86 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 CELSR2Q9HCU4 2923 aa0.25□□□□□ -2.37
SMC4-225ENST00000497203 PXDNQ92626 1479 aa0.24□□□□□ -2.37
SMC4-225ENST00000497203 CASKIN1Q8WXD9 1431 aa0.24□□□□□ -2.37
SMC4-225ENST00000497203 AHCTF1Q8WYP5 2266 aa0.24□□□□□ -2.37
SMC4-225ENST00000497203 SIX6O95475 246 aa0.24□□□□□ -2.37
SMC4-225ENST00000497203 SNRNP25Q9BV90 132 aaKnown RBP0.24□□□□□ -2.37
SMC4-225ENST00000497203 AGPAT4-IT1Q9H0P7 198 aa0.24□□□□□ -2.37
SMC4-225ENST00000497203 RERGLQ9H628 205 aa0.24□□□□□ -2.37
SMC4-225ENST00000497203 MYH7P12883 1935 aa0.24□□□□□ -2.37
SMC4-225ENST00000497203 FAT4Q6V0I7 4981 aa0.24□□□□□ -2.37
SMC4-225ENST00000497203 CFTRP13569 1480 aa0.23□□□□□ -2.37
SMC4-225ENST00000497203 FAM107BQ9H098 131 aa0.23□□□□□ -2.37
SMC4-225ENST00000497203 IGSF10Q6WRI0 2623 aa0.23□□□□□ -2.37
SMC4-225ENST00000497203 NCOR2Q9Y618 2525 aa0.23□□□□□ -2.37
SMC4-225ENST00000497203 IFT172Q9UG01 1749 aa0.22□□□□□ -2.37
SMC4-225ENST00000497203 TRAV13-2A0A0B4J235 113 aa0.22□□□□□ -2.37
SMC4-225ENST00000497203 G3V318 75 aa0.22□□□□□ -2.37
SMC4-225ENST00000497203 AQP10Q96PS8 301 aa0.22□□□□□ -2.37
SMC4-225ENST00000497203 SERP1Q9Y6X1 66 aa0.22□□□□□ -2.37
SMC4-225ENST00000497203 CACNA1CQ13936 2221 aa0.22□□□□□ -2.37
SMC4-225ENST00000497203 ZMYM4Q5VZL5 1548 aa0.22□□□□□ -2.37
SMC4-225ENST00000497203 SPAARA0A1B0GVQ0 90 aa0.21□□□□□ -2.38
SMC4-225ENST00000497203 HCG22E2RYF7 251 aa0.21□□□□□ -2.38
SMC4-225ENST00000497203 PI4KAP42356 2102 aa0.21□□□□□ -2.38
SMC4-225ENST00000497203 Q6AWC8 147 aa0.21□□□□□ -2.38
SMC4-225ENST00000497203 NAA60Q9H7X0 242 aa0.21□□□□□ -2.38
SMC4-225ENST00000497203 R4GMQ9 66 aa0.21□□□□□ -2.38
SMC4-225ENST00000497203 NAIPQ13075 1403 aa0.21□□□□□ -2.38
SMC4-225ENST00000497203 ZNF815PA8K554 130 aa0.2□□□□□ -2.38
SMC4-225ENST00000497203 GNG7O60262 68 aa0.2□□□□□ -2.38
SMC4-225ENST00000497203 MEIG1Q5JSS6 88 aa0.2□□□□□ -2.38
SMC4-225ENST00000497203 SSBP3-AS1Q7Z2R9 100 aa0.2□□□□□ -2.38
SMC4-225ENST00000497203 C1orf54Q8WWF1 131 aa0.2□□□□□ -2.38
SMC4-225ENST00000497203 SYNE2Q8WXH0 6885 aaKnown RBP0.2□□□□□ -2.38
SMC4-225ENST00000497203 A0A0D9SFI3 127 aa0.19□□□□□ -2.38
SMC4-225ENST00000497203 K7EP13 123 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms