RNA–Protein interactions for RNA: ENST00000495630.1

TMEM53-209, Transcript of transmembrane protein 53, human

TSL 2

Gene TMEM53, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM53-209	ENST00000495630	IGHV3-64	A0A075B6Q5	118 aa		11.15	□□□□□ -0.62
TMEM53-209	ENST00000495630		A0A087WYN8	130 aa		11.15	□□□□□ -0.62
TMEM53-209	ENST00000495630		F5H697	171 aa		11.15	□□□□□ -0.62
TMEM53-209	ENST00000495630	GAGE6	Q13070	117 aa		11.15	□□□□□ -0.62
TMEM53-209	ENST00000495630	CLPSL2	Q6UWE3	100 aa		11.15	□□□□□ -0.62
TMEM53-209	ENST00000495630	DPH3P1	Q9H4G8	78 aa		11.15	□□□□□ -0.62
TMEM53-209	ENST00000495630	TRBV25-1	A0A075B6N4	114 aa		11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	BORCS7-ASMT	A0A0B4J1R7	106 aa		11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	TRAV8-4	A0A0B4J246	113 aa		11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	hDV102S1	A0JD36	115 aa		11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630		P01737	135 aa		11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	CXCL1	P09341	107 aa		11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	FHIT	P49789	147 aa		11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	RPL7L1	Q6DKI1	246 aa	Known RBP	11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	OR10AG1	Q8NH19	301 aa		11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	SSBP4	Q9BWG4	385 aa	Predicted RBP	11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	AP5S1	Q9NUS5	200 aa		11.14	□□□□□ -0.63
TMEM53-209	ENST00000495630	REG3A	Q06141	175 aa		11.13	□□□□□ -0.63
TMEM53-209	ENST00000495630	IQCJ	Q1A5X6	159 aa		11.13	□□□□□ -0.63
TMEM53-209	ENST00000495630	LRP2	P98164	4655 aa		11.12	□□□□□ -0.63
TMEM53-209	ENST00000495630	SNAI2	O43623	268 aa		11.12	□□□□□ -0.63
TMEM53-209	ENST00000495630	GZMB	P10144	247 aa		11.12	□□□□□ -0.63
TMEM53-209	ENST00000495630	AKR1C8P	Q5T2L2	129 aa		11.12	□□□□□ -0.63
TMEM53-209	ENST00000495630	SPANXN1	Q5VSR9	72 aa		11.12	□□□□□ -0.63
TMEM53-209	ENST00000495630	INO80E	Q8NBZ0	244 aa	Predicted RBP	11.12	□□□□□ -0.63
TMEM53-209	ENST00000495630	PLAC8	Q9NZF1	115 aa		11.12	□□□□□ -0.63
TMEM53-209	ENST00000495630	IGHV1-24	A0A0C4DH33	117 aa		11.11	□□□□□ -0.63
TMEM53-209	ENST00000495630	SLPI	P03973	132 aa		11.11	□□□□□ -0.63
TMEM53-209	ENST00000495630	OR5AL1	P0C617	328 aa		11.11	□□□□□ -0.63
TMEM53-209	ENST00000495630	CST9LP1	Q5W188	147 aa		11.11	□□□□□ -0.63
TMEM53-209	ENST00000495630	SPACA4	Q8TDM5	124 aa		11.11	□□□□□ -0.63
TMEM53-209	ENST00000495630	LINC01600	Q96MT4	127 aa		11.11	□□□□□ -0.63
TMEM53-209	ENST00000495630	ALG5	Q9Y673	324 aa		11.11	□□□□□ -0.63
TMEM53-209	ENST00000495630	IGLV10-54	A0A075B6I4	117 aa		11.1	□□□□□ -0.63
TMEM53-209	ENST00000495630	S100A9	P06702	114 aa	Known RBP	11.1	□□□□□ -0.63
TMEM53-209	ENST00000495630		Q5BKY6	102 aa		11.1	□□□□□ -0.63
TMEM53-209	ENST00000495630	KIF25-AS1	Q9Y6Z4	181 aa		11.1	□□□□□ -0.63
TMEM53-209	ENST00000495630		A0A1B0GUV1	79 aa		11.09	□□□□□ -0.63
TMEM53-209	ENST00000495630	MAP1LC3B2	A6NCE7	125 aa		11.09	□□□□□ -0.63
TMEM53-209	ENST00000495630	CHTF8	P0CG12	524 aa		11.09	□□□□□ -0.63
TMEM53-209	ENST00000495630	SMIM17	P0DL12	118 aa		11.09	□□□□□ -0.63
TMEM53-209	ENST00000495630	AKR1C3	P42330	323 aa		11.09	□□□□□ -0.63
TMEM53-209	ENST00000495630	C20orf203	Q8NBC4	194 aa		11.09	□□□□□ -0.63
TMEM53-209	ENST00000495630	STOML3	Q8TAV4	291 aa		11.09	□□□□□ -0.63
TMEM53-209	ENST00000495630	C7orf33	Q8WU49	177 aa		11.09	□□□□□ -0.63
TMEM53-209	ENST00000495630	MAP1LC3B	Q9GZQ8	125 aa		11.09	□□□□□ -0.63
TMEM53-209	ENST00000495630	MUC21	A0A0G2JKD1	596 aa		11.08	□□□□□ -0.64
TMEM53-209	ENST00000495630	MUC21	A0A140T8X8	626 aa		11.08	□□□□□ -0.64
TMEM53-209	ENST00000495630	PHOX2A	O14813	284 aa		11.08	□□□□□ -0.64
TMEM53-209	ENST00000495630	MLST8	Q9BVC4	326 aa		11.08	□□□□□ -0.64
TMEM53-209	ENST00000495630	MED28	Q9H204	178 aa		11.08	□□□□□ -0.64
TMEM53-209	ENST00000495630	TNXB	P22105	4242 aa		11.08	□□□□□ -0.64
TMEM53-209	ENST00000495630	RNF213	Q63HN8	5207 aa		11.07	□□□□□ -0.64
TMEM53-209	ENST00000495630	SST	P61278	116 aa		11.06	□□□□□ -0.64
TMEM53-209	ENST00000495630	BAGE2	Q86Y30	109 aa		11.06	□□□□□ -0.64
TMEM53-209	ENST00000495630	IGLV4-60	A0A075B6I1	120 aa		11.05	□□□□□ -0.64
TMEM53-209	ENST00000495630		H7C1H1	209 aa		11.05	□□□□□ -0.64
TMEM53-209	ENST00000495630		M0QY20	66 aa		11.05	□□□□□ -0.64
TMEM53-209	ENST00000495630	GIP	P09681	153 aa	Predicted RBP	11.05	□□□□□ -0.64
TMEM53-209	ENST00000495630	RAB5C	P51148	216 aa		11.05	□□□□□ -0.64
TMEM53-209	ENST00000495630	CFAP161	Q6P656	301 aa		11.05	□□□□□ -0.64
TMEM53-209	ENST00000495630	AP1S3	Q96PC3	154 aa		11.05	□□□□□ -0.64
TMEM53-209	ENST00000495630	TMEM243	Q9BU79	118 aa		11.05	□□□□□ -0.64
TMEM53-209	ENST00000495630	PAGE4	O60829	102 aa		11.04	□□□□□ -0.64
TMEM53-209	ENST00000495630	GTSF1	Q8WW33	167 aa		11.04	□□□□□ -0.64
TMEM53-209	ENST00000495630	FXYD6-FXYD2	A0A087WZ82	144 aa		11.03	□□□□□ -0.64
TMEM53-209	ENST00000495630	RPS10	P46783	165 aa	Known RBP	11.03	□□□□□ -0.64
TMEM53-209	ENST00000495630	COX6A2	Q02221	97 aa		11.03	□□□□□ -0.64
TMEM53-209	ENST00000495630	GFRA4	Q9GZZ7	299 aa		11.03	□□□□□ -0.64
TMEM53-209	ENST00000495630		A0A0J9YXV3	536 aa		11.02	□□□□□ -0.65
TMEM53-209	ENST00000495630	KRTAP10-8	P60410	259 aa		11.02	□□□□□ -0.65
TMEM53-209	ENST00000495630	WDR73	Q6P4I2	378 aa		11.02	□□□□□ -0.65
TMEM53-209	ENST00000495630	NDUFS6	O75380	124 aa	Known RBP	11.01	□□□□□ -0.65
TMEM53-209	ENST00000495630	PRR3	P79522	188 aa	Known RBP	11.01	□□□□□ -0.65
TMEM53-209	ENST00000495630	MAJIN	Q3KP22	176 aa		11.01	□□□□□ -0.65
TMEM53-209	ENST00000495630	SCO2	A0A1W2PP80	73 aa		11	□□□□□ -0.65
TMEM53-209	ENST00000495630	MGP	P08493	103 aa		11	□□□□□ -0.65
TMEM53-209	ENST00000495630	SULT1A2	P50226	295 aa		11	□□□□□ -0.65
TMEM53-209	ENST00000495630	SUMO4	Q6EEV6	95 aa		11	□□□□□ -0.65
TMEM53-209	ENST00000495630	TMUB2	Q71RG4	321 aa		11	□□□□□ -0.65
TMEM53-209	ENST00000495630	C15orf56	Q8N910	161 aa		11	□□□□□ -0.65
TMEM53-209	ENST00000495630	PRSS3P2	Q8NHM4	247 aa		11	□□□□□ -0.65
TMEM53-209	ENST00000495630	PGLYRP4	Q96LB8	373 aa		11	□□□□□ -0.65
TMEM53-209	ENST00000495630	BATF3	Q9NR55	127 aa		11	□□□□□ -0.65
TMEM53-209	ENST00000495630	UBE2L6	O14933	153 aa		10.99	□□□□□ -0.65
TMEM53-209	ENST00000495630	NKX2-5	P52952	324 aa	Predicted RBP	10.99	□□□□□ -0.65
TMEM53-209	ENST00000495630	RASL11A	Q6T310	242 aa		10.99	□□□□□ -0.65
TMEM53-209	ENST00000495630	SPINK6	Q6UWN8	80 aa		10.99	□□□□□ -0.65
TMEM53-209	ENST00000495630	STPG4	Q8N801	248 aa		10.99	□□□□□ -0.65
TMEM53-209	ENST00000495630	MBD3L1	Q8WWY6	194 aa		10.99	□□□□□ -0.65
TMEM53-209	ENST00000495630	CYTL1	Q9NRR1	136 aa		10.99	□□□□□ -0.65
TMEM53-209	ENST00000495630	GAGE12H	A6NDE8	117 aa		10.98	□□□□□ -0.65
TMEM53-209	ENST00000495630	PFDN1	O60925	122 aa		10.98	□□□□□ -0.65
TMEM53-209	ENST00000495630	ODF1	Q14990	250 aa		10.98	□□□□□ -0.65
TMEM53-209	ENST00000495630	REG3G	Q6UW15	175 aa		10.98	□□□□□ -0.65
TMEM53-209	ENST00000495630	SFT2D1	Q8WV19	159 aa		10.98	□□□□□ -0.65
TMEM53-209	ENST00000495630	NIT2	Q9NQR4	276 aa		10.98	□□□□□ -0.65
TMEM53-209	ENST00000495630	CACNG7	P62955	275 aa		10.97	□□□□□ -0.65
TMEM53-209	ENST00000495630	IGKV2-24	A0A0C4DH68	120 aa		10.96	□□□□□ -0.65

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