RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 OR5AL1P0C617 328 aa14.3□□□□□ -0.12
HDDC3-203ENST00000494993 MIAQ16674 131 aa14.3□□□□□ -0.12
HDDC3-203ENST00000494993 BAGE2Q86Y30 109 aa14.3□□□□□ -0.12
HDDC3-203ENST00000494993 SFT2D1Q8WV19 159 aa14.3□□□□□ -0.12
HDDC3-203ENST00000494993 MBD3L1Q8WWY6 194 aa14.3□□□□□ -0.12
HDDC3-203ENST00000494993 F5H697 171 aa14.29□□□□□ -0.12
HDDC3-203ENST00000494993 PFDN1O60925 122 aa14.29□□□□□ -0.12
HDDC3-203ENST00000494993 TMEM97Q5BJF2 176 aa14.29□□□□□ -0.12
HDDC3-203ENST00000494993 SERTAD4-AS1Q5TG53 156 aa14.29□□□□□ -0.12
HDDC3-203ENST00000494993 NTM-AS1Q6ZSK4 140 aa14.29□□□□□ -0.12
HDDC3-203ENST00000494993 FAM213BQ8TBF2 198 aa14.29□□□□□ -0.12
HDDC3-203ENST00000494993 VAX2Q9UIW0 290 aa14.29□□□□□ -0.12
HDDC3-203ENST00000494993 HMCN2Q8NDA2 5059 aa14.29□□□□□ -0.12
HDDC3-203ENST00000494993 A0A1B0GV50 99 aa14.28□□□□□ -0.12
HDDC3-203ENST00000494993 KCNRGQ8N5I3 272 aa14.27□□□□□ -0.13
HDDC3-203ENST00000494993 PRR34Q9NV39 138 aa14.27□□□□□ -0.13
HDDC3-203ENST00000494993 KIF25-AS1Q9Y6Z4 181 aa14.27□□□□□ -0.13
HDDC3-203ENST00000494993 UMAD1C9J7I0 102 aa14.26□□□□□ -0.13
HDDC3-203ENST00000494993 SMLR1H3BR10 107 aa14.26□□□□□ -0.13
HDDC3-203ENST00000494993 PRSS1P07477 247 aa14.26□□□□□ -0.13
HDDC3-203ENST00000494993 SSTP61278 116 aa14.26□□□□□ -0.13
HDDC3-203ENST00000494993 ZNF345Q14585 488 aa14.26□□□□□ -0.13
HDDC3-203ENST00000494993 SMIM17P0DL12 118 aa14.25□□□□□ -0.13
HDDC3-203ENST00000494993 RPL37AP61513 92 aaKnown RBP14.25□□□□□ -0.13
HDDC3-203ENST00000494993 RBX1P62877 108 aa14.25□□□□□ -0.13
HDDC3-203ENST00000494993 DGAT2L7PQ6IED9 249 aa14.25□□□□□ -0.13
HDDC3-203ENST00000494993 CLPSL2Q6UWE3 100 aa14.25□□□□□ -0.13
HDDC3-203ENST00000494993 AP1S3Q96PC3 154 aa14.25□□□□□ -0.13
HDDC3-203ENST00000494993 DERL1Q9BUN8 251 aa14.25□□□□□ -0.13
HDDC3-203ENST00000494993 TRBV25-1A0A075B6N4 114 aa14.24□□□□□ -0.13
HDDC3-203ENST00000494993 GAGE6Q13070 117 aa14.24□□□□□ -0.13
HDDC3-203ENST00000494993 KRTAP26-1Q6PEX3 210 aa14.24□□□□□ -0.13
HDDC3-203ENST00000494993 LINC00269Q8N2A0 174 aa14.24□□□□□ -0.13
HDDC3-203ENST00000494993 C9orf163Q8N9P6 203 aa14.24□□□□□ -0.13
HDDC3-203ENST00000494993 TMUB2Q71RG4 321 aa14.23□□□□□ -0.13
HDDC3-203ENST00000494993 RGS21Q2M5E4 152 aa14.22□□□□□ -0.13
HDDC3-203ENST00000494993 H2AFB1P0C5Y9 115 aa14.21□□□□□ -0.13
HDDC3-203ENST00000494993 RPL35P42766 123 aaKnown RBP14.21□□□□□ -0.13
HDDC3-203ENST00000494993 IQCJQ1A5X6 159 aa14.21□□□□□ -0.13
HDDC3-203ENST00000494993 IGHV1-24A0A0C4DH33 117 aa14.2□□□□□ -0.14
HDDC3-203ENST00000494993 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.2□□□□□ -0.14
HDDC3-203ENST00000494993 MGPP08493 103 aa14.19□□□□□ -0.14
HDDC3-203ENST00000494993 HNRNPA3P51991 378 aaKnown RBP14.19□□□□□ -0.14
HDDC3-203ENST00000494993 A0A0D9SG52 128 aa14.18□□□□□ -0.14
HDDC3-203ENST00000494993 HMSDA8MTL9 139 aa14.18□□□□□ -0.14
HDDC3-203ENST00000494993 M0QY20 66 aa14.18□□□□□ -0.14
HDDC3-203ENST00000494993 BCL2L11O43521 198 aa14.18□□□□□ -0.14
HDDC3-203ENST00000494993 C11orf52Q96A22 123 aa14.18□□□□□ -0.14
HDDC3-203ENST00000494993 DAZAP1Q96EP5 407 aaKnown RBP14.18□□□□□ -0.14
HDDC3-203ENST00000494993 KANTRA0A1W2PQU2 76 aa14.17□□□□□ -0.14
HDDC3-203ENST00000494993 H7C1H1 209 aa14.17□□□□□ -0.14
HDDC3-203ENST00000494993 PANO1I0J062 215 aa14.17□□□□□ -0.14
HDDC3-203ENST00000494993 IGLC6P0CF74 106 aa14.17□□□□□ -0.14
HDDC3-203ENST00000494993 GZMBP10144 247 aa14.17□□□□□ -0.14
HDDC3-203ENST00000494993 REG3AQ06141 175 aa14.17□□□□□ -0.14
HDDC3-203ENST00000494993 SDIM1Q6ZPB5 146 aa14.17□□□□□ -0.14
HDDC3-203ENST00000494993 FER1L6-AS1Q8NA97 138 aa14.17□□□□□ -0.14
HDDC3-203ENST00000494993 CLRN3Q8NCR9 226 aa14.17□□□□□ -0.14
HDDC3-203ENST00000494993 TPPP3Q9BW30 176 aa14.17□□□□□ -0.14
HDDC3-203ENST00000494993 IGLV10-54A0A075B6I4 117 aa14.16□□□□□ -0.14
HDDC3-203ENST00000494993 SUMO4Q6EEV6 95 aa14.16□□□□□ -0.14
HDDC3-203ENST00000494993 MANBALQ9NQG1 85 aa14.16□□□□□ -0.14
HDDC3-203ENST00000494993 RPS20P60866 119 aaKnown RBP14.15□□□□□ -0.14
HDDC3-203ENST00000494993 CENPWQ5EE01 88 aa14.15□□□□□ -0.14
HDDC3-203ENST00000494993 C20orf203Q8NBC4 194 aa14.15□□□□□ -0.14
HDDC3-203ENST00000494993 OR2D3Q8NGH3 330 aa14.15□□□□□ -0.14
HDDC3-203ENST00000494993 GNG13Q9P2W3 67 aa14.15□□□□□ -0.14
HDDC3-203ENST00000494993 PLA2G2DQ9UNK4 145 aa14.15□□□□□ -0.14
HDDC3-203ENST00000494993 CNBPP62633 177 aaKnown RBP14.14□□□□□ -0.15
HDDC3-203ENST00000494993 CACNG7P62955 275 aa14.14□□□□□ -0.15
HDDC3-203ENST00000494993 EIF5AP63241 154 aaKnown RBP14.14□□□□□ -0.15
HDDC3-203ENST00000494993 CCL20P78556 96 aa14.14□□□□□ -0.15
HDDC3-203ENST00000494993 UBR4Q5T4S7 5183 aa14.13□□□□□ -0.15
HDDC3-203ENST00000494993 TRAV8-4A0A0B4J246 113 aa14.13□□□□□ -0.15
HDDC3-203ENST00000494993 C19orf71A6NCJ1 209 aa14.13□□□□□ -0.15
HDDC3-203ENST00000494993 P01737 135 aa14.13□□□□□ -0.15
HDDC3-203ENST00000494993 NKX2-5P52952 324 aaPredicted RBP14.13□□□□□ -0.15
HDDC3-203ENST00000494993 TMEM243Q9BU79 118 aa14.13□□□□□ -0.15
HDDC3-203ENST00000494993 IGLV4-60A0A075B6I1 120 aa14.12□□□□□ -0.15
HDDC3-203ENST00000494993 A0A1B0GUV1 79 aa14.12□□□□□ -0.15
HDDC3-203ENST00000494993 hDV102S1A0JD36 115 aa14.12□□□□□ -0.15
HDDC3-203ENST00000494993 CIRBPQ14011 172 aaKnown RBP14.12□□□□□ -0.15
HDDC3-203ENST00000494993 RASL11AQ6T310 242 aa14.12□□□□□ -0.15
HDDC3-203ENST00000494993 GFRA4Q9GZZ7 299 aa14.11□□□□□ -0.15
HDDC3-203ENST00000494993 TRAV1-1A0A0B4J248 108 aa14.1□□□□□ -0.15
HDDC3-203ENST00000494993 SMIM12Q96EX1 92 aa14.1□□□□□ -0.15
HDDC3-203ENST00000494993 PGLYRP4Q96LB8 373 aa14.1□□□□□ -0.15
HDDC3-203ENST00000494993 XKRY2A2RUG3 117 aa14.09□□□□□ -0.15
HDDC3-203ENST00000494993 RAB19A4D1S5 217 aa14.09□□□□□ -0.15
HDDC3-203ENST00000494993 F2Z2F3 143 aa14.09□□□□□ -0.15
HDDC3-203ENST00000494993 TRGC1P0CF51 173 aa14.09□□□□□ -0.15
HDDC3-203ENST00000494993 DPH3P1Q9H4G8 78 aa14.09□□□□□ -0.15
HDDC3-203ENST00000494993 NIT2Q9NQR4 276 aa14.09□□□□□ -0.15
HDDC3-203ENST00000494993 IGHV3-64A0A075B6Q5 118 aa14.08□□□□□ -0.16
HDDC3-203ENST00000494993 GNG4P50150 75 aa14.08□□□□□ -0.16
HDDC3-203ENST00000494993 AP5S1Q9NUS5 200 aa14.08□□□□□ -0.16
HDDC3-203ENST00000494993 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.07□□□□□ -0.16
HDDC3-203ENST00000494993 RAB5CP51148 216 aa14.07□□□□□ -0.16
HDDC3-203ENST00000494993 LYZL1Q6UWQ5 148 aa14.07□□□□□ -0.16
HDDC3-203ENST00000494993 UBE2L6O14933 153 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms