RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 Q6ZSN1 163 aa7.19□□□□□ -1.26
SKA1-204ENST00000488454 SH2D6Q7Z4S9 175 aa7.19□□□□□ -1.26
SKA1-204ENST00000488454 ATP5L2Q7Z4Y8 100 aa7.19□□□□□ -1.26
SKA1-204ENST00000488454 TMEM191AQ9H0A3 160 aa7.19□□□□□ -1.26
SKA1-204ENST00000488454 APLNQ9ULZ1 77 aa7.19□□□□□ -1.26
SKA1-204ENST00000488454 KIF25-AS1Q9Y6Z4 181 aa7.19□□□□□ -1.26
SKA1-204ENST00000488454 RYR3Q15413 4870 aa7.19□□□□□ -1.26
SKA1-204ENST00000488454 TRBV10-1A0A0K0K1A3 114 aa7.18□□□□□ -1.26
SKA1-204ENST00000488454 DNAH7Q8WXX0 4024 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 TRAV9-1A0A075B6T8 112 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 GAGE12JA6NER3 117 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 PLA2G1BP04054 148 aaKnown RBP7.17□□□□□ -1.26
SKA1-204ENST00000488454 CCL18P55774 89 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 LINC00315P59091 139 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 RPL36AP83881 106 aaKnown RBP7.17□□□□□ -1.26
SKA1-204ENST00000488454 GAGE1Q13065 139 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 GAGE4Q13068 117 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 GAGE5Q13069 117 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 GAGE13Q4V321 117 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 NEGR1Q7Z3B1 354 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.17□□□□□ -1.26
SKA1-204ENST00000488454 RPL36ALQ969Q0 106 aaKnown RBP7.17□□□□□ -1.26
SKA1-204ENST00000488454 TNFRSF18Q9Y5U5 241 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 URGCP-MRPS24S4R325 110 aa7.17□□□□□ -1.26
SKA1-204ENST00000488454 KMT2CQ8NEZ4 4911 aaKnown RBP7.17□□□□□ -1.26
SKA1-204ENST00000488454 A0A096LPF7 62 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 LOC100131303A0A0U1RQF7 123 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 P0DMU3 169 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 FAM231AP0DMU4 169 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 FAM231CP0DMU5 169 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 SUMO4Q6EEV6 95 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 RASL11AQ6T310 242 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 UBE2DNLQ8IWF7 75 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 AMN1Q8IY45 258 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 ZNRF2Q8NHG8 242 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 FRZBQ92765 325 aa7.16□□□□□ -1.26
SKA1-204ENST00000488454 TRBV7-3A0A075B6L6 115 aa7.15□□□□□ -1.26
SKA1-204ENST00000488454 A0A1B0GXF2 115 aa7.15□□□□□ -1.26
SKA1-204ENST00000488454 M0QY20 66 aa7.15□□□□□ -1.26
SKA1-204ENST00000488454 RAB4AP20338 218 aa7.15□□□□□ -1.26
SKA1-204ENST00000488454 FAM104BQ5XKR9 115 aa7.15□□□□□ -1.26
SKA1-204ENST00000488454 ATP6V0E2Q8NHE4 81 aa7.15□□□□□ -1.26
SKA1-204ENST00000488454 MRAP2Q96G30 205 aa7.15□□□□□ -1.26
SKA1-204ENST00000488454 DNAJC30Q96LL9 226 aa7.15□□□□□ -1.26
SKA1-204ENST00000488454 NIT2Q9NQR4 276 aa7.15□□□□□ -1.26
SKA1-204ENST00000488454 STARD9Q9P2P6 4700 aa7.14□□□□□ -1.27
SKA1-204ENST00000488454 TRAV26-2A0A0B4J265 109 aa7.14□□□□□ -1.27
SKA1-204ENST00000488454 PPP1R17O96001 155 aa7.14□□□□□ -1.27
SKA1-204ENST00000488454 LCE1DQ5T752 114 aa7.14□□□□□ -1.27
SKA1-204ENST00000488454 ATRAIDQ6UW56 229 aa7.14□□□□□ -1.27
SKA1-204ENST00000488454 GATD1Q8NB37 220 aa7.14□□□□□ -1.27
SKA1-204ENST00000488454 SMCO4Q9NRQ5 59 aa7.14□□□□□ -1.27
SKA1-204ENST00000488454 LY6G6CO95867 125 aa7.13□□□□□ -1.27
SKA1-204ENST00000488454 CKS2P33552 79 aa7.13□□□□□ -1.27
SKA1-204ENST00000488454 ESRGQ1W209 222 aa7.13□□□□□ -1.27
SKA1-204ENST00000488454 COX19Q49B96 90 aa7.13□□□□□ -1.27
SKA1-204ENST00000488454 LGALS9CQ6DKI2 356 aa7.13□□□□□ -1.27
SKA1-204ENST00000488454 LYPD5Q6UWN5 251 aa7.13□□□□□ -1.27
SKA1-204ENST00000488454 NEXN-AS1Q8NBZ9 246 aa7.13□□□□□ -1.27
SKA1-204ENST00000488454 RNF185Q96GF1 192 aa7.13□□□□□ -1.27
SKA1-204ENST00000488454 GTSF1LQ9H1H1 148 aa7.13□□□□□ -1.27
SKA1-204ENST00000488454 Q9UF83 564 aa7.13□□□□□ -1.27
SKA1-204ENST00000488454 PLECQ15149 4684 aaKnown RBP7.13□□□□□ -1.27
SKA1-204ENST00000488454 DYNC2H1Q8NCM8 4307 aaKnown RBP7.13□□□□□ -1.27
SKA1-204ENST00000488454 NACAE9PAV3 2078 aa7.12□□□□□ -1.27
SKA1-204ENST00000488454 MRPL51Q4U2R6 128 aaKnown RBP7.12□□□□□ -1.27
SKA1-204ENST00000488454 OR10J3Q5JRS4 329 aa7.12□□□□□ -1.27
SKA1-204ENST00000488454 DAZ4Q86SG3 579 aaKnown RBP7.12□□□□□ -1.27
SKA1-204ENST00000488454 DAZ3Q9NR90 486 aaKnown RBP7.12□□□□□ -1.27
SKA1-204ENST00000488454 TGIF2-C20orf24A0A0A6YYL0 155 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 PPBPP02775 128 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 S100A1P23297 94 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 TIRAPP58753 221 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 UBE2D3P61077 147 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 UBE2D2P62837 147 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 ELOBQ15370 118 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 TMEM97Q5BJF2 176 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 TMEM136Q6ZRR5 245 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 RPL39LQ96EH5 51 aaKnown RBP7.11□□□□□ -1.27
SKA1-204ENST00000488454 GNB1LQ9BYB4 327 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 KRTAP17-1Q9BYP8 105 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 CDIP1Q9H305 208 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 ST20Q9HBF5 79 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 LINC00588Q9Y4M8 146 aa7.11□□□□□ -1.27
SKA1-204ENST00000488454 TRBV24-1A0A075B6N3 115 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 TRAV8-6A0A0B4J262 113 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 KRTAP9-7A8MTY7 169 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 D6R8Y8 96 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 SMKR1H3BMG3 65 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 NCR2O95944 276 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 HLA-DQA1P01909 254 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 APCSP02743 223 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 MT-ND6P03923 174 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 LINC00694P0DN24 101 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 ORMDL3Q8N138 153 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 LINC00476Q8WZB0 136 aa7.1□□□□□ -1.27
SKA1-204ENST00000488454 MRPS16Q9Y3D3 137 aaKnown RBP7.1□□□□□ -1.27
SKA1-204ENST00000488454 IGHV3-38A0A0C4DH36 116 aa7.09□□□□□ -1.27
SKA1-204ENST00000488454 TRBV6-5A0A0K0K1A5 114 aa7.09□□□□□ -1.27
SKA1-204ENST00000488454 PMCHP20382 165 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms