RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 TEX261Q6UWH6 196 aa10.07□□□□□ -0.8
TRIM54-204ENST00000488321 DAZ4Q86SG3 579 aaKnown RBP10.07□□□□□ -0.8
TRIM54-204ENST00000488321 DAZ3Q9NR90 486 aaKnown RBP10.07□□□□□ -0.8
TRIM54-204ENST00000488321 A0A087WTM6 91 aa10.06□□□□□ -0.8
TRIM54-204ENST00000488321 A0A087WX48 190 aa10.06□□□□□ -0.8
TRIM54-204ENST00000488321 H7C1H1 209 aa10.06□□□□□ -0.8
TRIM54-204ENST00000488321 SRP19P09132 144 aaKnown RBP10.06□□□□□ -0.8
TRIM54-204ENST00000488321 SUMO4Q6EEV6 95 aa10.06□□□□□ -0.8
TRIM54-204ENST00000488321 TRBV6-8A0A0A6YYG3 113 aa10.05□□□□□ -0.8
TRIM54-204ENST00000488321 TMEM262E9PQX1 116 aa10.05□□□□□ -0.8
TRIM54-204ENST00000488321 LAGE3Q14657 143 aa10.05□□□□□ -0.8
TRIM54-204ENST00000488321 WDR73Q6P4I2 378 aa10.05□□□□□ -0.8
TRIM54-204ENST00000488321 FAM231DQ6ZW35 169 aa10.05□□□□□ -0.8
TRIM54-204ENST00000488321 NIT1Q86X76 327 aa10.05□□□□□ -0.8
TRIM54-204ENST00000488321 GTSF1Q8WW33 167 aa10.05□□□□□ -0.8
TRIM54-204ENST00000488321 DPH3P1Q9H4G8 78 aa10.05□□□□□ -0.8
TRIM54-204ENST00000488321 A8MWL6 223 aa10.04□□□□□ -0.8
TRIM54-204ENST00000488321 M0QY20 66 aa10.04□□□□□ -0.8
TRIM54-204ENST00000488321 NDUFS6O75380 124 aaKnown RBP10.04□□□□□ -0.8
TRIM54-204ENST00000488321 FUSP35637 526 aaKnown RBP eCLIP10.04□□□□□ -0.8
TRIM54-204ENST00000488321 LINC01551Q86U37 167 aa10.04□□□□□ -0.8
TRIM54-204ENST00000488321 PGPEP1Q9NXJ5 209 aa10.04□□□□□ -0.8
TRIM54-204ENST00000488321 TRAV8-3A0A0A6YYJ7 113 aa10.03□□□□□ -0.8
TRIM54-204ENST00000488321 SMIM15Q7Z3B0 74 aa10.03□□□□□ -0.8
TRIM54-204ENST00000488321 PGLYRP4Q96LB8 373 aa10.03□□□□□ -0.8
TRIM54-204ENST00000488321 CHCHD5Q9BSY4 110 aa10.03□□□□□ -0.8
TRIM54-204ENST00000488321 TM2D2Q9BX73 214 aa10.03□□□□□ -0.8
TRIM54-204ENST00000488321 CNFNQ9BYD5 112 aa10.03□□□□□ -0.8
TRIM54-204ENST00000488321 TMEM97Q5BJF2 176 aa10.02□□□□□ -0.81
TRIM54-204ENST00000488321 RASL11AQ6T310 242 aa10.02□□□□□ -0.81
TRIM54-204ENST00000488321 DNAJC30Q96LL9 226 aa10.02□□□□□ -0.81
TRIM54-204ENST00000488321 KLK12Q9UKR0 248 aa10.02□□□□□ -0.81
TRIM54-204ENST00000488321 PEA15Q15121 130 aa10.01□□□□□ -0.81
TRIM54-204ENST00000488321 ELOBQ15370 118 aa10.01□□□□□ -0.81
TRIM54-204ENST00000488321 TMEM241Q24JQ0 296 aa10.01□□□□□ -0.81
TRIM54-204ENST00000488321 CT83Q5H943 113 aa10.01□□□□□ -0.81
TRIM54-204ENST00000488321 BORCS7Q96B45 105 aa10.01□□□□□ -0.81
TRIM54-204ENST00000488321 CHCHD7Q9BUK0 85 aa10.01□□□□□ -0.81
TRIM54-204ENST00000488321 LRP1BQ9NZR2 4599 aa10.01□□□□□ -0.81
TRIM54-204ENST00000488321 C9JQL5 133 aa10□□□□□ -0.81
TRIM54-204ENST00000488321 SRSF3P84103 164 aaKnown RBP10□□□□□ -0.81
TRIM54-204ENST00000488321 FAM74A3Q4VXF1 159 aa10□□□□□ -0.81
TRIM54-204ENST00000488321 NTM-AS1Q6ZSK4 140 aa10□□□□□ -0.81
TRIM54-204ENST00000488321 C15orf54Q8N8G6 183 aa10□□□□□ -0.81
TRIM54-204ENST00000488321 UBE2WQ96B02 151 aa10□□□□□ -0.81
TRIM54-204ENST00000488321 NIT2Q9NQR4 276 aa10□□□□□ -0.81
TRIM54-204ENST00000488321 OSTCQ9NRP0 149 aa10□□□□□ -0.81
TRIM54-204ENST00000488321 TRBV25-1A0A075B6N4 114 aa9.99□□□□□ -0.81
TRIM54-204ENST00000488321 TRAV26-2A0A0B4J265 109 aa9.99□□□□□ -0.81
TRIM54-204ENST00000488321 LRCOL1A6NCL2 159 aa9.99□□□□□ -0.81
TRIM54-204ENST00000488321 ADIRFQ15847 76 aa9.99□□□□□ -0.81
TRIM54-204ENST00000488321 CDPF1Q6NVV7 123 aa9.99□□□□□ -0.81
TRIM54-204ENST00000488321 TSKUQ8WUA8 353 aa9.99□□□□□ -0.81
TRIM54-204ENST00000488321 RMI2Q96E14 147 aa9.99□□□□□ -0.81
TRIM54-204ENST00000488321 IGKV2D-24A0A075B6R9 120 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 IGHV1-24A0A0C4DH33 117 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 HIGD1CA8MV81 97 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 CDK2AP2O75956 126 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 CRPP02741 224 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 FOXA3P55318 350 aaPredicted RBP9.98□□□□□ -0.81
TRIM54-204ENST00000488321 PKIAP61925 76 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 RPL23P62829 140 aaKnown RBP9.98□□□□□ -0.81
TRIM54-204ENST00000488321 GAGE6Q13070 117 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 MPV17L2Q567V2 206 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 DEFB104AQ8WTQ1 72 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 ISOC2Q96AB3 205 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 NAT8Q9UHE5 227 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 COX11Q9Y6N1 276 aa9.98□□□□□ -0.81
TRIM54-204ENST00000488321 ANGP03950 147 aaKnown RBP9.97□□□□□ -0.81
TRIM54-204ENST00000488321 Q8N976 141 aa9.97□□□□□ -0.81
TRIM54-204ENST00000488321 GATD1Q8NB37 220 aa9.97□□□□□ -0.81
TRIM54-204ENST00000488321 GFRA4Q9GZZ7 299 aa9.97□□□□□ -0.81
TRIM54-204ENST00000488321 RYR1P21817 5038 aa9.97□□□□□ -0.81
TRIM54-204ENST00000488321 IGLV5-52A0A0A0MRZ9 124 aa9.96□□□□□ -0.82
TRIM54-204ENST00000488321 A0A1B0GUT8 65 aa9.96□□□□□ -0.82
TRIM54-204ENST00000488321 LECT2O14960 151 aa9.96□□□□□ -0.82
TRIM54-204ENST00000488321 IQCJQ1A5X6 159 aa9.96□□□□□ -0.82
TRIM54-204ENST00000488321 ATRAIDQ6UW56 229 aa9.96□□□□□ -0.82
TRIM54-204ENST00000488321 Q8N814 137 aa9.96□□□□□ -0.82
TRIM54-204ENST00000488321 SMDT1Q9H4I9 107 aa9.96□□□□□ -0.82
TRIM54-204ENST00000488321 V9GYV3 84 aa9.96□□□□□ -0.82
TRIM54-204ENST00000488321 DNAH5Q8TE73 4624 aa9.96□□□□□ -0.82
TRIM54-204ENST00000488321 FAM231BA6NCW3 169 aa9.95□□□□□ -0.82
TRIM54-204ENST00000488321 RAB14P61106 215 aa9.95□□□□□ -0.82
TRIM54-204ENST00000488321 Q0VG73 95 aa9.95□□□□□ -0.82
TRIM54-204ENST00000488321 RBX1P62877 108 aa9.94□□□□□ -0.82
TRIM54-204ENST00000488321 COTL1Q14019 142 aa9.94□□□□□ -0.82
TRIM54-204ENST00000488321 WFDC2Q14508 124 aa9.94□□□□□ -0.82
TRIM54-204ENST00000488321 BAALCQ8WXS3 180 aa9.94□□□□□ -0.82
TRIM54-204ENST00000488321 FRZBQ92765 325 aa9.94□□□□□ -0.82
TRIM54-204ENST00000488321 RPL39LQ96EH5 51 aaKnown RBP9.94□□□□□ -0.82
TRIM54-204ENST00000488321 TMEM243Q9BU79 118 aa9.94□□□□□ -0.82
TRIM54-204ENST00000488321 C1orf43Q9BWL3 253 aa9.94□□□□□ -0.82
TRIM54-204ENST00000488321 UBE2L6O14933 153 aa9.93□□□□□ -0.82
TRIM54-204ENST00000488321 GCSHP23434 173 aa9.93□□□□□ -0.82
TRIM54-204ENST00000488321 AMTP48728 403 aa9.93□□□□□ -0.82
TRIM54-204ENST00000488321 CLPSL2Q6UWE3 100 aa9.93□□□□□ -0.82
TRIM54-204ENST00000488321 ENHOQ6UWT2 76 aa9.93□□□□□ -0.82
TRIM54-204ENST00000488321 MAPKAPK5-AS1Q8N8E1 139 aa9.93□□□□□ -0.82
TRIM54-204ENST00000488321 NUP35Q8NFH5 326 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms