RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SYS1-DBNDD2H3BUS1 97 aa10.19□□□□□ -0.78
CUX1-209ENST00000487284 RHODO00212 210 aa10.19□□□□□ -0.78
CUX1-209ENST00000487284 RS1O15537 224 aa10.19□□□□□ -0.78
CUX1-209ENST00000487284 DAZ2Q13117 558 aaKnown RBP10.19□□□□□ -0.78
CUX1-209ENST00000487284 LAGE3Q14657 143 aa10.19□□□□□ -0.78
CUX1-209ENST00000487284 CFAP126Q5VTH2 177 aa10.19□□□□□ -0.78
CUX1-209ENST00000487284 TEX43Q6ZNM6 134 aa10.19□□□□□ -0.78
CUX1-209ENST00000487284 ST20Q9HBF5 79 aa10.19□□□□□ -0.78
CUX1-209ENST00000487284 POLR2KP53803 58 aaKnown RBP10.18□□□□□ -0.78
CUX1-209ENST00000487284 S100A12P80511 92 aa10.18□□□□□ -0.78
CUX1-209ENST00000487284 RRN3P1Q2M238 152 aa10.18□□□□□ -0.78
CUX1-209ENST00000487284 DEFB135Q30KP9 77 aa10.18□□□□□ -0.78
CUX1-209ENST00000487284 LGALS9BQ3B8N2 356 aa10.18□□□□□ -0.78
CUX1-209ENST00000487284 DEFB121Q5J5C9 76 aa10.18□□□□□ -0.78
CUX1-209ENST00000487284 MAP1LC3CQ9BXW4 147 aa10.18□□□□□ -0.78
CUX1-209ENST00000487284 H7C1H1 209 aa10.18□□□□□ -0.78
CUX1-209ENST00000487284 TCAPO15273 167 aa10.17□□□□□ -0.78
CUX1-209ENST00000487284 PET117Q6UWS5 81 aa10.17□□□□□ -0.78
CUX1-209ENST00000487284 ZFP2Q6ZN57 461 aa10.17□□□□□ -0.78
CUX1-209ENST00000487284 SPATA12Q7Z6I5 190 aa10.17□□□□□ -0.78
CUX1-209ENST00000487284 TRGV1A0A0A0MS02 117 aa10.16□□□□□ -0.78
CUX1-209ENST00000487284 SDHAF1A6NFY7 115 aa10.16□□□□□ -0.78
CUX1-209ENST00000487284 ORMDL2Q53FV1 153 aa10.16□□□□□ -0.78
CUX1-209ENST00000487284 Q6ZTI0 123 aa10.16□□□□□ -0.78
CUX1-209ENST00000487284 OVOL2Q9BRP0 275 aa10.16□□□□□ -0.78
CUX1-209ENST00000487284 TRBV27A0A0K0K1C4 114 aa10.15□□□□□ -0.78
CUX1-209ENST00000487284 PCP4L1A6NKN8 68 aa10.15□□□□□ -0.78
CUX1-209ENST00000487284 VCYO14598 125 aa10.15□□□□□ -0.78
CUX1-209ENST00000487284 IGHV3-53P01767 116 aa10.15□□□□□ -0.78
CUX1-209ENST00000487284 MRAPQ8TCY5 172 aa10.15□□□□□ -0.78
CUX1-209ENST00000487284 TENM3Q9P273 2699 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 IGHV3-73A0A0B4J1V6 119 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 IFI27L1Q96BM0 104 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 NOP10Q9NPE3 64 aaKnown RBP10.14□□□□□ -0.79
CUX1-209ENST00000487284 X6R8D5 127 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 DNAH9Q9NYC9 4486 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 TRAV4A0A0B4J268 109 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 C20orf202A1L168 122 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 SMIM9A6NGZ8 99 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 DEFA6Q01524 100 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 LINC01545Q5VT33 79 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 Q6ZSN1 163 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 NEGR1Q7Z3B1 354 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 SBSPONQ8IVN8 264 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 ZNF664Q8N3J9 261 aa10.14□□□□□ -0.79
CUX1-209ENST00000487284 NUDT3O95989 172 aa10.13□□□□□ -0.79
CUX1-209ENST00000487284 PKIAP61925 76 aa10.13□□□□□ -0.79
CUX1-209ENST00000487284 OR4C5Q8NGB2 326 aa10.13□□□□□ -0.79
CUX1-209ENST00000487284 RNF183Q96D59 192 aa10.13□□□□□ -0.79
CUX1-209ENST00000487284 KIR2DL4Q99706 377 aa10.13□□□□□ -0.79
CUX1-209ENST00000487284 VAMP8Q9BV40 100 aa10.13□□□□□ -0.79
CUX1-209ENST00000487284 RETNQ9HD89 108 aa10.13□□□□□ -0.79
CUX1-209ENST00000487284 ATP5LO75964 103 aa10.12□□□□□ -0.79
CUX1-209ENST00000487284 OR11H2Q8NH07 326 aa10.12□□□□□ -0.79
CUX1-209ENST00000487284 TOMM6Q96B49 74 aa10.12□□□□□ -0.79
CUX1-209ENST00000487284 TSTD3H0UI37 97 aa10.11□□□□□ -0.79
CUX1-209ENST00000487284 P0DMU3 169 aa10.11□□□□□ -0.79
CUX1-209ENST00000487284 FAM231AP0DMU4 169 aa10.11□□□□□ -0.79
CUX1-209ENST00000487284 FAM231CP0DMU5 169 aa10.11□□□□□ -0.79
CUX1-209ENST00000487284 ZNF479Q96JC4 524 aa10.11□□□□□ -0.79
CUX1-209ENST00000487284 DNAJC30Q96LL9 226 aa10.11□□□□□ -0.79
CUX1-209ENST00000487284 C18orf15Q96N68 181 aa10.11□□□□□ -0.79
CUX1-209ENST00000487284 HUWE1Q7Z6Z7 4374 aaKnown RBP10.11□□□□□ -0.79
CUX1-209ENST00000487284 PRKDCP78527 4128 aaKnown RBP10.11□□□□□ -0.79
CUX1-209ENST00000487284 CIDEAO60543 219 aa10.1□□□□□ -0.79
CUX1-209ENST00000487284 G0S2P27469 103 aa10.1□□□□□ -0.79
CUX1-209ENST00000487284 LGALS9CQ6DKI2 356 aa10.1□□□□□ -0.79
CUX1-209ENST00000487284 LINC00612Q8N6U2 182 aa10.1□□□□□ -0.79
CUX1-209ENST00000487284 PRO1933Q9H354 126 aa10.1□□□□□ -0.79
CUX1-209ENST00000487284 GAGE12BA1L429 117 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 LINC01549A6NIU2 74 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 H0Y8G0 127 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 I3L3M4 83 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 GAGE7O76087 117 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 TSHBP01222 138 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 GAGE12FP0CL80 117 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 GAGE12GP0CL81 117 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 GAGE12IP0CL82 117 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 RHOHQ15669 191 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 C2orf66Q6UXQ4 117 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 ATOH7Q8N100 152 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 NEXN-AS1Q8NBZ9 246 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 TP53TG1Q9Y2A0 90 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 TM2D3Q9BRN9 247 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 Q9UF83 564 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 CYSLTR1Q9Y271 337 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 PAM16Q9Y3D7 125 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 TNFRSF18Q9Y5U5 241 aa10.09□□□□□ -0.79
CUX1-209ENST00000487284 COL7A1Q02388 2944 aa10.08□□□□□ -0.8
CUX1-209ENST00000487284 TRGV2A0A075B6R0 118 aa10.08□□□□□ -0.8
CUX1-209ENST00000487284 TRAV9-2A0A087WT02 112 aa10.08□□□□□ -0.8
CUX1-209ENST00000487284 TRBV10-1A0A0K0K1A3 114 aa10.07□□□□□ -0.8
CUX1-209ENST00000487284 K7EQD1 137 aa10.07□□□□□ -0.8
CUX1-209ENST00000487284 ERASQ7Z444 233 aa10.07□□□□□ -0.8
CUX1-209ENST00000487284 SCGB3A1Q96QR1 104 aa10.07□□□□□ -0.8
CUX1-209ENST00000487284 B9D2Q9BPU9 175 aa10.07□□□□□ -0.8
CUX1-209ENST00000487284 PMCHL2Q9BQD1 86 aa10.07□□□□□ -0.8
CUX1-209ENST00000487284 SPATA25Q9BR10 227 aa10.07□□□□□ -0.8
CUX1-209ENST00000487284 IGHV4-28A0A0C4DH34 117 aa10.06□□□□□ -0.8
CUX1-209ENST00000487284 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms