RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	ASB13	Q8WXK3	278 aa		2.56	□□□□□ -2
SNRNP40-205	ENST00000486941	RMI2	Q96E14	147 aa		2.56	□□□□□ -2
SNRNP40-205	ENST00000486941	TVP23C	Q96ET8	276 aa		2.56	□□□□□ -2
SNRNP40-205	ENST00000486941	HYLS1	Q96M11	299 aa		2.56	□□□□□ -2
SNRNP40-205	ENST00000486941	C9orf85	Q96MD7	179 aa		2.56	□□□□□ -2
SNRNP40-205	ENST00000486941	CHAC1	Q9BUX1	264 aa		2.56	□□□□□ -2
SNRNP40-205	ENST00000486941	NMES1	Q9C002	83 aa		2.56	□□□□□ -2
SNRNP40-205	ENST00000486941	TREM1	Q9NP99	234 aa		2.56	□□□□□ -2
SNRNP40-205	ENST00000486941	MBD2	Q9UBB5	411 aa		2.56	□□□□□ -2
SNRNP40-205	ENST00000486941	LRP1	Q07954	4544 aa	Known RBP	2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	2.55	□□□□□ -2
SNRNP40-205	ENST00000486941		A0A087WWC5	75 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	TRAV8-1	A0A0A6YYK1	113 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	IGHV3-73	A0A0B4J1V6	119 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	FAM240B	A0A1B0GVZ2	78 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	SERTM2	A0A1B0GWG4	89 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	RBFOX3	A6NFN3	312 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	GGTLC3	B5MD39	225 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941		F6UZH7	168 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	TAAR5	O14804	337 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	LECT2	O14960	151 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	SEC11B	P0C7V7	166 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	LINC00694	P0DN24	101 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	FGF8	P55075	233 aa	Predicted RBP	2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	ACOT6	Q3I5F7	207 aa	Predicted RBP	2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	ZNF506	Q5JVG8	444 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	DPPA3	Q6W0C5	159 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	ZFP2	Q6ZN57	461 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	LINC00299	Q6ZSB3	139 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	GOLT1A	Q6ZVE7	132 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	DAZ4	Q86SG3	579 aa	Known RBP	2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	CYB561D1	Q8N8Q1	229 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	CIRBP-AS1	Q8TBR5	109 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	SCGB1C1	Q8TD33	95 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	BAALC	Q8WXS3	180 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	NDFIP1	Q9BT67	221 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	DAZ3	Q9NR90	486 aa	Known RBP	2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	OR5AC2	Q9NZP5	309 aa		2.55	□□□□□ -2
SNRNP40-205	ENST00000486941	UBR4	Q5T4S7	5183 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941		A0A1W2PPV4	95 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941		A8MWV9	139 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941		K7EQM0	130 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	SIX6	O95475	246 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	GCG	P01275	180 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	IGLV2-8	P01709	118 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	RNASE3	P12724	160 aa	Known RBP	2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	ZNF80	P51504	273 aa	Predicted RBP	2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	ELOB	Q15370	118 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	LRRC37A5P	Q49AS3	106 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	LINC01620	Q4KN68	170 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	SAPCD1	Q5SSQ6	148 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	ATRAID	Q6UW56	229 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	NIT1	Q86X76	327 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	OR10G9	Q8NGN4	311 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	SUN5	Q8TC36	379 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	CHCHD7	Q9BUK0	85 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	CCDC32	Q9BV29	185 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	PARL	Q9H300	379 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	RPH3AL	Q9UNE2	315 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	PSG8	Q9UQ74	426 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	HSPB11	Q9Y547	144 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	URGCP-MRPS24	S4R325	110 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	HMCN2	Q8NDA2	5059 aa		2.54	□□□□□ -2
SNRNP40-205	ENST00000486941	IGKV2D-24	A0A075B6R9	120 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	KRTAP5-8	O75690	187 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	EIF3G	O75821	320 aa	Known RBP eCLIP	2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	MPC2	O95563	127 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	TCRA	P04437	139 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	STAG3L2	P0CL84	134 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	STAG3L3	P0CL85	134 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	PET100	P0DJ07	73 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	RPL12	P30050	165 aa	Known RBP	2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	H2BFS	P57053	126 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	GNG5	P63218	68 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	FLI1	Q01543	452 aa	Predicted RBP	2.53	□□□□□ -2
SNRNP40-205	ENST00000486941		Q0VG73	95 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	ZNF674	Q2M3X9	581 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	LGALSL	Q3ZCW2	172 aa	Predicted RBP	2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	UFSP1	Q6NVU6	142 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	TMEM75	Q8N9X5	138 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	C5orf17	Q8NAS9	161 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	OR10G7	Q8NGN6	311 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	OR2T35	Q8NGX2	323 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	PPP1R1C	Q8WVI7	109 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	SAMD10	Q9BYL1	202 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941		Q9UF83	564 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	KLK12	Q9UKR0	248 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	EPDR1	Q9UM22	224 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	KIF25-AS1	Q9Y6Z4	181 aa		2.53	□□□□□ -2
SNRNP40-205	ENST00000486941	FAT3	Q8TDW7	4589 aa		2.52	□□□□□ -2.01
SNRNP40-205	ENST00000486941		A0A087WX48	190 aa		2.52	□□□□□ -2.01
SNRNP40-205	ENST00000486941	FABP5P3	A8MUU1	101 aa		2.52	□□□□□ -2.01
SNRNP40-205	ENST00000486941	INMT-MINDY4	F8WBC2	141 aa		2.52	□□□□□ -2.01
SNRNP40-205	ENST00000486941	HMGB3	O15347	200 aa	Known RBP	2.52	□□□□□ -2.01
SNRNP40-205	ENST00000486941	ARL14EPL	P0DKL9	152 aa		2.52	□□□□□ -2.01
SNRNP40-205	ENST00000486941	S100A4	P26447	101 aa	Known RBP	2.52	□□□□□ -2.01
SNRNP40-205	ENST00000486941	ASIP	P42127	132 aa		2.52	□□□□□ -2.01
SNRNP40-205	ENST00000486941	CDC34	P49427	236 aa	Predicted RBP	2.52	□□□□□ -2.01
SNRNP40-205	ENST00000486941	RAB2A	P61019	212 aa		2.52	□□□□□ -2.01
SNRNP40-205	ENST00000486941	RPL37A	P61513	92 aa	Known RBP	2.52	□□□□□ -2.01

Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms