RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 IGHV3-30-5P0DP03 117 aa10.01□□□□□ -0.81
USP4-212ENST00000486549 SUMO4Q6EEV6 95 aa10.01□□□□□ -0.81
USP4-212ENST00000486549 TNFRSF18Q9Y5U5 241 aa10.01□□□□□ -0.81
USP4-212ENST00000486549 A0A087WWC5 75 aa10□□□□□ -0.81
USP4-212ENST00000486549 IFITM2Q01629 132 aa10□□□□□ -0.81
USP4-212ENST00000486549 LINC01556Q5JQF7 62 aa10□□□□□ -0.81
USP4-212ENST00000486549 Q8N3U1 123 aa10□□□□□ -0.81
USP4-212ENST00000486549 TSKUQ8WUA8 353 aa10□□□□□ -0.81
USP4-212ENST00000486549 BORCS7Q96B45 105 aa10□□□□□ -0.81
USP4-212ENST00000486549 V9GYV3 84 aa10□□□□□ -0.81
USP4-212ENST00000486549 HIGD1CA8MV81 97 aa9.99□□□□□ -0.81
USP4-212ENST00000486549 H7C1H1 209 aa9.99□□□□□ -0.81
USP4-212ENST00000486549 M0QY20 66 aa9.99□□□□□ -0.81
USP4-212ENST00000486549 CLLU1Q5K131 121 aa9.99□□□□□ -0.81
USP4-212ENST00000486549 SMIM15Q7Z3B0 74 aa9.99□□□□□ -0.81
USP4-212ENST00000486549 C10orf126Q8N4M7 172 aa9.99□□□□□ -0.81
USP4-212ENST00000486549 PKD1P98161 4303 aa9.98□□□□□ -0.81
USP4-212ENST00000486549 K7EP13 123 aa9.98□□□□□ -0.81
USP4-212ENST00000486549 FOXA3P55318 350 aaPredicted RBP9.98□□□□□ -0.81
USP4-212ENST00000486549 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.98□□□□□ -0.81
USP4-212ENST00000486549 GFRA4Q9GZZ7 299 aa9.98□□□□□ -0.81
USP4-212ENST00000486549 RASL11AQ6T310 242 aa9.97□□□□□ -0.81
USP4-212ENST00000486549 TRAV26-2A0A0B4J265 109 aa9.96□□□□□ -0.82
USP4-212ENST00000486549 A0A1B0GUT8 65 aa9.96□□□□□ -0.82
USP4-212ENST00000486549 FAM231BA6NCW3 169 aa9.96□□□□□ -0.82
USP4-212ENST00000486549 Q6ZRN7 208 aaPredicted RBP9.96□□□□□ -0.82
USP4-212ENST00000486549 NFE4Q86UQ8 179 aa9.96□□□□□ -0.82
USP4-212ENST00000486549 DNAJC30Q96LL9 226 aa9.96□□□□□ -0.82
USP4-212ENST00000486549 Q9HAA7 133 aa9.96□□□□□ -0.82
USP4-212ENST00000486549 TRBV6-8A0A0A6YYG3 113 aa9.95□□□□□ -0.82
USP4-212ENST00000486549 DAZ4Q86SG3 579 aaKnown RBP9.95□□□□□ -0.82
USP4-212ENST00000486549 NUP35Q8NFH5 326 aa9.95□□□□□ -0.82
USP4-212ENST00000486549 DAZ3Q9NR90 486 aaKnown RBP9.95□□□□□ -0.82
USP4-212ENST00000486549 URGCP-MRPS24S4R325 110 aa9.95□□□□□ -0.82
USP4-212ENST00000486549 IBA57-AS1B1ANH7 110 aa9.94□□□□□ -0.82
USP4-212ENST00000486549 NIT1Q86X76 327 aa9.94□□□□□ -0.82
USP4-212ENST00000486549 GATD1Q8NB37 220 aa9.94□□□□□ -0.82
USP4-212ENST00000486549 NIT2Q9NQR4 276 aa9.94□□□□□ -0.82
USP4-212ENST00000486549 NAT8BQ9UHF3 227 aa9.94□□□□□ -0.82
USP4-212ENST00000486549 A0A087WX48 190 aa9.93□□□□□ -0.82
USP4-212ENST00000486549 TMEM262E9PQX1 116 aa9.93□□□□□ -0.82
USP4-212ENST00000486549 RIGQ13278 110 aa9.93□□□□□ -0.82
USP4-212ENST00000486549 KCNIP4Q6PIL6 250 aa9.93□□□□□ -0.82
USP4-212ENST00000486549 DEFB104AQ8WTQ1 72 aa9.93□□□□□ -0.82
USP4-212ENST00000486549 CHCHD5Q9BSY4 110 aa9.93□□□□□ -0.82
USP4-212ENST00000486549 PKHD1P08F94 4074 aa9.93□□□□□ -0.82
USP4-212ENST00000486549 DNAH11Q96DT5 4516 aa9.92□□□□□ -0.82
USP4-212ENST00000486549 SMIM27A0A1W2PRY6 76 aa9.92□□□□□ -0.82
USP4-212ENST00000486549 TMEM97Q5BJF2 176 aa9.92□□□□□ -0.82
USP4-212ENST00000486549 NTM-AS1Q6ZSK4 140 aa9.92□□□□□ -0.82
USP4-212ENST00000486549 RPL39LQ96EH5 51 aaKnown RBP9.92□□□□□ -0.82
USP4-212ENST00000486549 PSCAO43653 123 aa9.91□□□□□ -0.82
USP4-212ENST00000486549 TMEM191AQ9H0A3 160 aa9.91□□□□□ -0.82
USP4-212ENST00000486549 TRBV25-1A0A075B6N4 114 aa9.9□□□□□ -0.82
USP4-212ENST00000486549 IGHV1-24A0A0C4DH33 117 aa9.9□□□□□ -0.82
USP4-212ENST00000486549 C16orf90A8MZG2 172 aa9.9□□□□□ -0.82
USP4-212ENST00000486549 GAGE6Q13070 117 aa9.9□□□□□ -0.82
USP4-212ENST00000486549 LAGE3Q14657 143 aa9.9□□□□□ -0.82
USP4-212ENST00000486549 SPATA12Q7Z6I5 190 aa9.9□□□□□ -0.82
USP4-212ENST00000486549 AMN1Q8IY45 258 aa9.9□□□□□ -0.82
USP4-212ENST00000486549 KLK12Q9UKR0 248 aa9.9□□□□□ -0.82
USP4-212ENST00000486549 CAMPP49913 170 aa9.89□□□□□ -0.83
USP4-212ENST00000486549 PNRC1Q12796 327 aaPredicted RBP9.89□□□□□ -0.83
USP4-212ENST00000486549 MPV17L2Q567V2 206 aa9.89□□□□□ -0.83
USP4-212ENST00000486549 FRZBQ92765 325 aa9.89□□□□□ -0.83
USP4-212ENST00000486549 CHCHD7Q9BUK0 85 aa9.89□□□□□ -0.83
USP4-212ENST00000486549 DYNC1H1Q14204 4646 aaKnown RBP9.89□□□□□ -0.83
USP4-212ENST00000486549 EREGO14944 169 aa9.88□□□□□ -0.83
USP4-212ENST00000486549 GAS8-AS1O95177 125 aa9.88□□□□□ -0.83
USP4-212ENST00000486549 RAB4AP20338 218 aa9.88□□□□□ -0.83
USP4-212ENST00000486549 IQCJQ1A5X6 159 aa9.88□□□□□ -0.83
USP4-212ENST00000486549 MRPL54Q6P161 138 aaKnown RBP9.88□□□□□ -0.83
USP4-212ENST00000486549 UQCC3Q6UW78 93 aa9.88□□□□□ -0.83
USP4-212ENST00000486549 COMMD7Q86VX2 200 aa9.88□□□□□ -0.83
USP4-212ENST00000486549 UBE2WQ96B02 151 aa9.88□□□□□ -0.83
USP4-212ENST00000486549 RNF185Q96GF1 192 aa9.88□□□□□ -0.83
USP4-212ENST00000486549 A0A087WTM6 91 aa9.87□□□□□ -0.83
USP4-212ENST00000486549 TRAV8-3A0A0A6YYJ7 113 aa9.87□□□□□ -0.83
USP4-212ENST00000486549 PPP1R2P9O14990 202 aa9.87□□□□□ -0.83
USP4-212ENST00000486549 KRTAP10-2P60368 255 aa9.87□□□□□ -0.83
USP4-212ENST00000486549 PKIAP61925 76 aa9.87□□□□□ -0.83
USP4-212ENST00000486549 COTL1Q14019 142 aa9.87□□□□□ -0.83
USP4-212ENST00000486549 ELOBQ15370 118 aa9.87□□□□□ -0.83
USP4-212ENST00000486549 ATRAIDQ6UW56 229 aa9.87□□□□□ -0.83
USP4-212ENST00000486549 Q8N976 141 aa9.87□□□□□ -0.83
USP4-212ENST00000486549 SDHAF1A6NFY7 115 aa9.86□□□□□ -0.83
USP4-212ENST00000486549 F8W036 122 aa9.86□□□□□ -0.83
USP4-212ENST00000486549 SMKR1H3BMG3 65 aa9.86□□□□□ -0.83
USP4-212ENST00000486549 NCR2O95944 276 aa9.86□□□□□ -0.83
USP4-212ENST00000486549 MT-ND4LP03901 98 aa9.86□□□□□ -0.83
USP4-212ENST00000486549 ANGP03950 147 aaKnown RBP9.86□□□□□ -0.83
USP4-212ENST00000486549 ADCYAP1P18509 176 aa9.86□□□□□ -0.83
USP4-212ENST00000486549 AMTP48728 403 aa9.86□□□□□ -0.83
USP4-212ENST00000486549 MRAP2Q96G30 205 aa9.86□□□□□ -0.83
USP4-212ENST00000486549 TMEM243Q9BU79 118 aa9.86□□□□□ -0.83
USP4-212ENST00000486549 TM2D2Q9BX73 214 aa9.86□□□□□ -0.83
USP4-212ENST00000486549 TMEM218A2RU14 115 aa9.85□□□□□ -0.83
USP4-212ENST00000486549 CRPP02741 224 aa9.85□□□□□ -0.83
USP4-212ENST00000486549 FUSP35637 526 aaKnown RBP eCLIP9.85□□□□□ -0.83
USP4-212ENST00000486549 RPS10P46783 165 aaKnown RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 133.3 ms