RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 I3L3M4 83 aa8.43□□□□□ -1.06
HDAC6-228ENST00000486227 C2orf91Q6ZV80 131 aa8.43□□□□□ -1.06
HDAC6-228ENST00000486227 C15orf53Q8NAA6 179 aa8.43□□□□□ -1.06
HDAC6-228ENST00000486227 EXPH5Q8NEV8 1989 aa8.43□□□□□ -1.06
HDAC6-228ENST00000486227 CFC1BP0CG36 223 aa8.43□□□□□ -1.06
HDAC6-228ENST00000486227 CFC1P0CG37 223 aa8.43□□□□□ -1.06
HDAC6-228ENST00000486227 SPANXB1Q9NS25 103 aaPredicted RBP8.43□□□□□ -1.06
HDAC6-228ENST00000486227 E9PLD3 99 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 INSL3P51460 131 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 GPHB5Q86YW7 130 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 CPAMD8Q8IZJ3 1885 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 TRAV12-1A0A0B4J245 112 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 EBI3Q14213 229 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 RMI2Q96E14 147 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 ATG2AQ2TAZ0 1938 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 K7EMT4 169 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 TM2D2Q9BX73 214 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 SMAD5-AS1Q9Y6J3 95 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 S100A7L2Q5SY68 101 aa8.42□□□□□ -1.06
HDAC6-228ENST00000486227 C4orf3Q8WVX3 66 aa8.41□□□□□ -1.06
HDAC6-228ENST00000486227 TRAV25A0A0B4J276 109 aa8.41□□□□□ -1.06
HDAC6-228ENST00000486227 NOP10Q9NPE3 64 aaKnown RBP8.41□□□□□ -1.06
HDAC6-228ENST00000486227 C9orf47Q6ZRZ4 202 aa8.41□□□□□ -1.06
HDAC6-228ENST00000486227 JPT2Q9H910 190 aa8.41□□□□□ -1.06
HDAC6-228ENST00000486227 Q6YL49 198 aa8.41□□□□□ -1.06
HDAC6-228ENST00000486227 TMEM243Q9BU79 118 aa8.41□□□□□ -1.06
HDAC6-228ENST00000486227 SPART-AS1P0CW21 52 aa8.4□□□□□ -1.06
HDAC6-228ENST00000486227 ZNF561-AS1K7EIQ3 104 aa8.4□□□□□ -1.06
HDAC6-228ENST00000486227 LY6G6DO95868 133 aa8.4□□□□□ -1.07
HDAC6-228ENST00000486227 ANKRD29Q8N6D5 301 aa8.4□□□□□ -1.07
HDAC6-228ENST00000486227 RPL39LQ96EH5 51 aaKnown RBP8.4□□□□□ -1.07
HDAC6-228ENST00000486227 EDA2RQ9HAV5 297 aa8.4□□□□□ -1.07
HDAC6-228ENST00000486227 RHOHQ15669 191 aa8.39□□□□□ -1.07
HDAC6-228ENST00000486227 EPG5Q9HCE0 2579 aa8.39□□□□□ -1.07
HDAC6-228ENST00000486227 U3KQE9 123 aa8.39□□□□□ -1.07
HDAC6-228ENST00000486227 INAFM2P0DMQ5 153 aa8.39□□□□□ -1.07
HDAC6-228ENST00000486227 ZNF625Q96I27 306 aaPredicted RBP8.39□□□□□ -1.07
HDAC6-228ENST00000486227 IGF1P05019 195 aa8.39□□□□□ -1.07
HDAC6-228ENST00000486227 POLQO75417 2590 aa8.39□□□□□ -1.07
HDAC6-228ENST00000486227 SMIM20Q8N5G0 67 aa8.39□□□□□ -1.07
HDAC6-228ENST00000486227 RNF152Q8N8N0 203 aa8.39□□□□□ -1.07
HDAC6-228ENST00000486227 OVOL2Q9BRP0 275 aa8.39□□□□□ -1.07
HDAC6-228ENST00000486227 A0A096LPF7 62 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 CARD19Q96LW7 228 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 A0A0J9YY99 117 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 IGHG4P01861 327 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 ZNF80P51504 273 aaPredicted RBP8.38□□□□□ -1.07
HDAC6-228ENST00000486227 SRSF2Q01130 221 aaKnown RBP8.38□□□□□ -1.07
HDAC6-228ENST00000486227 PRIMA1Q86XR5 153 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 UFSP1Q6NVU6 142 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 Q6ZUT4 128 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 NDUFA11Q86Y39 141 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 TMEM61Q8N0U2 210 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 A0A1W2PPR1 153 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 SHISA2Q6UWI4 295 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 NDUFA12Q9UI09 145 aa8.38□□□□□ -1.07
HDAC6-228ENST00000486227 RNASE13Q5GAN3 156 aaKnown RBP8.37□□□□□ -1.07
HDAC6-228ENST00000486227 FN1P02751 2386 aaKnown RBP8.37□□□□□ -1.07
HDAC6-228ENST00000486227 ATP5G1P05496 136 aa8.37□□□□□ -1.07
HDAC6-228ENST00000486227 GAGE2AQ6NT46 116 aa8.37□□□□□ -1.07
HDAC6-228ENST00000486227 Q8N1Y9 231 aa8.37□□□□□ -1.07
HDAC6-228ENST00000486227 URB1-AS1Q96HZ7 61 aa8.36□□□□□ -1.07
HDAC6-228ENST00000486227 MTORP42345 2549 aa8.36□□□□□ -1.07
HDAC6-228ENST00000486227 PKD1L2Q7Z442 2459 aa8.36□□□□□ -1.07
HDAC6-228ENST00000486227 ANGP03950 147 aaKnown RBP8.36□□□□□ -1.07
HDAC6-228ENST00000486227 Q8N6K4 173 aa8.36□□□□□ -1.07
HDAC6-228ENST00000486227 C16orf74Q96GX8 76 aa8.36□□□□□ -1.07
HDAC6-228ENST00000486227 LAMA2P24043 3122 aaKnown RBP8.36□□□□□ -1.07
HDAC6-228ENST00000486227 CCL18P55774 89 aa8.36□□□□□ -1.07
HDAC6-228ENST00000486227 LINC01620Q4KN68 170 aa8.36□□□□□ -1.07
HDAC6-228ENST00000486227 A4D1N5 150 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 SUMO4Q6EEV6 95 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 C10orf99Q6UWK7 81 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 PTH2Q96A98 100 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 RNF183Q96D59 192 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 IGKV2D-26A0A0A0MRZ7 120 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 TOMM6Q96B49 74 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 SPATA25Q9BR10 227 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 U3KQK5 164 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 LEPROTO15243 131 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 ZFAND3Q9H8U3 227 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 SPANXCQ9NY87 97 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 VWC2LB2RUY7 222 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 DEFB135Q30KP9 77 aa8.35□□□□□ -1.07
HDAC6-228ENST00000486227 MT-ATP8P03928 68 aa8.34□□□□□ -1.07
HDAC6-228ENST00000486227 IGLC6P0CF74 106 aa8.34□□□□□ -1.07
HDAC6-228ENST00000486227 A0A0J9YX75 114 aa8.34□□□□□ -1.07
HDAC6-228ENST00000486227 MRPL23Q16540 153 aaKnown RBP8.34□□□□□ -1.07
HDAC6-228ENST00000486227 BAALCQ8WXS3 180 aa8.34□□□□□ -1.07
HDAC6-228ENST00000486227 ACYP1P07311 99 aa8.34□□□□□ -1.07
HDAC6-228ENST00000486227 Q6ZSV7 163 aa8.34□□□□□ -1.08
HDAC6-228ENST00000486227 HIST1H4AP62805 103 aaKnown RBP8.33□□□□□ -1.08
HDAC6-228ENST00000486227 CITED1Q99966 193 aa8.33□□□□□ -1.08
HDAC6-228ENST00000486227 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.33□□□□□ -1.08
HDAC6-228ENST00000486227 IGKV2-29A2NJV5 120 aaPredicted RBP8.33□□□□□ -1.08
HDAC6-228ENST00000486227 MDFICQ9P1T7 246 aa8.33□□□□□ -1.08
HDAC6-228ENST00000486227 GATD1Q8NB37 220 aa8.32□□□□□ -1.08
HDAC6-228ENST00000486227 IL17DQ8TAD2 202 aa8.32□□□□□ -1.08
HDAC6-228ENST00000486227 CRLF1O75462 422 aa8.32□□□□□ -1.08
HDAC6-228ENST00000486227 Q6ZS46 218 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms