RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 RREB1Q92766 1687 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 BCORL1Q5H9F3 1711 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 EPG5Q9HCE0 2579 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 HELZP42694 1942 aaKnown RBP-0.24□□□□□ -2.45
VPS50-216ENST00000484954 TRBV20-1A0A075B6N2 111 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 BORCS7-ASMTA0A0B4J1R7 106 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 KALRNO60229 2985 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 SSBP1Q04837 148 aaKnown RBP-0.24□□□□□ -2.45
VPS50-216ENST00000484954 MORN2Q502X0 79 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 LINC01545Q5VT33 79 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 C4orf33Q8N1A6 199 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 SMIM11BQ8TCY0 68 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 COX7B2Q8TF08 81 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 MRPL40Q9NQ50 206 aaKnown RBP-0.24□□□□□ -2.45
VPS50-216ENST00000484954 NDUFA12Q9UI09 145 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 ERG28Q9UKR5 140 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 DNHD1Q96M86 4753 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 CCDC171Q6TFL3 1326 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 CDK13Q14004 1512 aaKnown RBP-0.24□□□□□ -2.45
VPS50-216ENST00000484954 CASZ1Q86V15 1759 aa-0.24□□□□□ -2.45
VPS50-216ENST00000484954 AHCTF1Q8WYP5 2266 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 TRGV1A0A0A0MS02 117 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 TRBV7-1A0A0A6YYK4 115 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 TRAV12-3A0A0B4J271 114 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 FAM236AA0A1B0GUQ0 79 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 FAM236BA0A1B0GV22 79 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 CLPSL1A2RUU4 121 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 CCDC179H3BU77 68 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 RBP4P02753 201 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 IGLC6P0CF74 106 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 NEFHP12036 1026 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 Q6ZRX8 168 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 STARD9Q9P2P6 4700 aa-0.25□□□□□ -2.45
VPS50-216ENST00000484954 SYNJ1O43426 1573 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 J3QLW9 94 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 COX4I1P13073 169 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 HIST1H1AQ02539 215 aaPredicted RBP-0.26□□□□□ -2.45
VPS50-216ENST00000484954 SPCS2Q15005 226 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 KRTAP19-7Q3SYF9 63 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 MIC13Q5XKP0 118 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 CYP2G1PQ6ZSU1 146 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 FAM213BQ8TBF2 198 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 MAGOHBQ96A72 148 aaKnown RBP-0.26□□□□□ -2.45
VPS50-216ENST00000484954 AIF1LQ9BQI0 150 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 SPANXA1Q9NS26 97 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 SPANXCQ9NY87 97 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 MYO15AQ9UKN7 3530 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 LRRK2Q5S007 2527 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 AKAP6Q13023 2319 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 CELSR3Q9NYQ7 3312 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 MYH1P12882 1939 aa-0.26□□□□□ -2.45
VPS50-216ENST00000484954 LYSTQ99698 3801 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 ERCC6Q03468 1493 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 PTPRQQ9UMZ3 2332 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 KIAA0100Q14667 2235 aaKnown RBP-0.27□□□□□ -2.45
VPS50-216ENST00000484954 G3V318 75 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 M0R129 80 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 YPEL1O60688 119 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 DBIP07108 87 aaKnown RBP-0.27□□□□□ -2.45
VPS50-216ENST00000484954 LINC00694P0DN24 101 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 INSL4Q14641 139 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 CCDC153Q494R4 210 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 C9orf116Q5BN46 136 aaPredicted RBP-0.27□□□□□ -2.45
VPS50-216ENST00000484954 TMEM242Q9NWH2 141 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 V9GYV3 84 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 DNAH3Q8TD57 4116 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 DCHS1Q96JQ0 3298 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 PKD1P98161 4303 aa-0.27□□□□□ -2.45
VPS50-216ENST00000484954 GCN1Q92616 2671 aaKnown RBP-0.28□□□□□ -2.45
VPS50-216ENST00000484954 DOCK11Q5JSL3 2073 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 A0A0C4DFX4 3053 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 WNK1Q9H4A3 2382 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 VIRMAQ69YN4 1812 aaKnown RBP-0.28□□□□□ -2.45
VPS50-216ENST00000484954 XIRP1Q702N8 1843 aaKnown RBP-0.28□□□□□ -2.45
VPS50-216ENST00000484954 TMEM14DPA8MWL7 114 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 TSPAN19P0C672 248 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 PIRTP0C851 137 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 SCGB1A1P11684 91 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 NCS1P62166 190 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 SLC48A1Q6P1K1 146 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 C10orf82Q8WW14 230 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 WFDC6Q9BQY6 131 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 LAMB1P07942 1786 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 TNRC18O15417 2968 aaPredicted RBP-0.28□□□□□ -2.45
VPS50-216ENST00000484954 ZMYM4Q5VZL5 1548 aa-0.28□□□□□ -2.45
VPS50-216ENST00000484954 SVEP1Q4LDE5 3571 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 ANK3Q12955 4377 aaKnown RBP-0.29□□□□□ -2.46
VPS50-216ENST00000484954 IBTKQ9P2D0 1353 aaPredicted RBP-0.29□□□□□ -2.46
VPS50-216ENST00000484954 UNC80Q8N2C7 3258 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 ARPC5O15511 151 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 APODP05090 189 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 ACYP2P14621 99 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 EDDM3BP56851 147 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 UBE2G1P62253 170 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 FAM74A4Q5TZK3 123 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 SSBP3-AS1Q7Z2R9 100 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 VSTM2AQ8TAG5 236 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 SAR1AQ9NR31 198 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 CEP295Q9C0D2 2601 aa-0.29□□□□□ -2.46
VPS50-216ENST00000484954 SPTBN2O15020 2390 aa-0.3□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms