RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 GNG13Q9P2W3 67 aa14.11□□□□□ -0.15
USP40-215ENST00000484528 CRPP02741 224 aa14.1□□□□□ -0.15
USP40-215ENST00000484528 Q0VG73 95 aa14.1□□□□□ -0.15
USP40-215ENST00000484528 ENHOQ6UWT2 76 aa14.1□□□□□ -0.15
USP40-215ENST00000484528 CHCHD5Q9BSY4 110 aa14.1□□□□□ -0.15
USP40-215ENST00000484528 C1orf43Q9BWL3 253 aa14.1□□□□□ -0.15
USP40-215ENST00000484528 ANGP03950 147 aaKnown RBP14.09□□□□□ -0.15
USP40-215ENST00000484528 PLA2G1BP04054 148 aaKnown RBP14.09□□□□□ -0.15
USP40-215ENST00000484528 GZMBP10144 247 aa14.09□□□□□ -0.15
USP40-215ENST00000484528 EIF5AP63241 154 aaKnown RBP14.09□□□□□ -0.15
USP40-215ENST00000484528 AP1S3Q96PC3 154 aa14.08□□□□□ -0.16
USP40-215ENST00000484528 TPPP3Q9BW30 176 aa14.08□□□□□ -0.16
USP40-215ENST00000484528 SMIM17P0DL12 118 aa14.07□□□□□ -0.16
USP40-215ENST00000484528 CENPWQ5EE01 88 aa14.07□□□□□ -0.16
USP40-215ENST00000484528 NTM-AS1Q6ZSK4 140 aa14.07□□□□□ -0.16
USP40-215ENST00000484528 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.07□□□□□ -0.16
USP40-215ENST00000484528 C11orf52Q96A22 123 aa14.07□□□□□ -0.16
USP40-215ENST00000484528 MANBALQ9NQG1 85 aa14.07□□□□□ -0.16
USP40-215ENST00000484528 KIF25-AS1Q9Y6Z4 181 aa14.07□□□□□ -0.16
USP40-215ENST00000484528 HLA-DQA1P01909 254 aa14.06□□□□□ -0.16
USP40-215ENST00000484528 MGPP08493 103 aa14.06□□□□□ -0.16
USP40-215ENST00000484528 CLPSL2Q6UWE3 100 aa14.06□□□□□ -0.16
USP40-215ENST00000484528 J3QL48 77 aa14.05□□□□□ -0.16
USP40-215ENST00000484528 IGLV2-8P01709 118 aa14.04□□□□□ -0.16
USP40-215ENST00000484528 GAGE6Q13070 117 aa14.04□□□□□ -0.16
USP40-215ENST00000484528 OR2D3Q8NGH3 330 aa14.04□□□□□ -0.16
USP40-215ENST00000484528 CHAC1Q9BUX1 264 aa14.04□□□□□ -0.16
USP40-215ENST00000484528 VAX2Q9UIW0 290 aa14.04□□□□□ -0.16
USP40-215ENST00000484528 RAB19A4D1S5 217 aa14.03□□□□□ -0.16
USP40-215ENST00000484528 IGLC6P0CF74 106 aa14.03□□□□□ -0.16
USP40-215ENST00000484528 C14orf177Q52M58 125 aa14.03□□□□□ -0.16
USP40-215ENST00000484528 FER1L6-AS1Q8NA97 138 aa14.03□□□□□ -0.16
USP40-215ENST00000484528 CIRBP-AS1Q8TBR5 109 aa14.03□□□□□ -0.16
USP40-215ENST00000484528 USP17L23D6RBM5 183 aa14.02□□□□□ -0.17
USP40-215ENST00000484528 RBX1P62877 108 aa14.02□□□□□ -0.17
USP40-215ENST00000484528 DAZAP1Q96EP5 407 aaKnown RBP14.02□□□□□ -0.17
USP40-215ENST00000484528 TRBV25-1A0A075B6N4 114 aa14.01□□□□□ -0.17
USP40-215ENST00000484528 TRAV1-1A0A0B4J248 108 aa14.01□□□□□ -0.17
USP40-215ENST00000484528 PKIAP61925 76 aa14.01□□□□□ -0.17
USP40-215ENST00000484528 MIAQ16674 131 aa14.01□□□□□ -0.17
USP40-215ENST00000484528 TMEM97Q5BJF2 176 aa14.01□□□□□ -0.17
USP40-215ENST00000484528 GNG4P50150 75 aa14□□□□□ -0.17
USP40-215ENST00000484528 SUMO4Q6EEV6 95 aa14□□□□□ -0.17
USP40-215ENST00000484528 LINC00269Q8N2A0 174 aa14□□□□□ -0.17
USP40-215ENST00000484528 C19orf71A6NCJ1 209 aa13.99□□□□□ -0.17
USP40-215ENST00000484528 M0QY20 66 aa13.99□□□□□ -0.17
USP40-215ENST00000484528 RPS20P60866 119 aaKnown RBP13.99□□□□□ -0.17
USP40-215ENST00000484528 PRSS1P07477 247 aa13.98□□□□□ -0.17
USP40-215ENST00000484528 RAB5CP51148 216 aa13.98□□□□□ -0.17
USP40-215ENST00000484528 MEF2BQ02080 365 aaPredicted RBP13.98□□□□□ -0.17
USP40-215ENST00000484528 DEFB104AQ8WTQ1 72 aa13.98□□□□□ -0.17
USP40-215ENST00000484528 TRBV20OR9-2A0A075B6H5 130 aa13.97□□□□□ -0.17
USP40-215ENST00000484528 TEX46H3BTG2 121 aa13.97□□□□□ -0.17
USP40-215ENST00000484528 SULT1A2P50226 295 aa13.97□□□□□ -0.17
USP40-215ENST00000484528 NKX2-5P52952 324 aaPredicted RBP13.97□□□□□ -0.17
USP40-215ENST00000484528 IQCJQ1A5X6 159 aa13.97□□□□□ -0.17
USP40-215ENST00000484528 PRR34Q9NV39 138 aa13.97□□□□□ -0.17
USP40-215ENST00000484528 MED9Q9NWA0 146 aa13.97□□□□□ -0.17
USP40-215ENST00000484528 IGLV10-54A0A075B6I4 117 aa13.96□□□□□ -0.17
USP40-215ENST00000484528 IGHV1-24A0A0C4DH33 117 aa13.96□□□□□ -0.17
USP40-215ENST00000484528 H7C1H1 209 aa13.96□□□□□ -0.17
USP40-215ENST00000484528 P01737 135 aa13.96□□□□□ -0.17
USP40-215ENST00000484528 KRTAP10-4P60372 401 aaPredicted RBP13.96□□□□□ -0.17
USP40-215ENST00000484528 CACNG7P62955 275 aa13.96□□□□□ -0.17
USP40-215ENST00000484528 EIF5AL1Q6IS14 154 aaKnown RBP13.96□□□□□ -0.17
USP40-215ENST00000484528 IFNA1P01562 189 aa13.95□□□□□ -0.18
USP40-215ENST00000484528 KRTAP26-1Q6PEX3 210 aa13.95□□□□□ -0.18
USP40-215ENST00000484528 LYZL1Q6UWQ5 148 aa13.95□□□□□ -0.18
USP40-215ENST00000484528 PDE6DO43924 150 aa13.94□□□□□ -0.18
USP40-215ENST00000484528 BCL2P10415 239 aa13.94□□□□□ -0.18
USP40-215ENST00000484528 SMIM12Q96EX1 92 aa13.94□□□□□ -0.18
USP40-215ENST00000484528 XKRY2A2RUG3 117 aa13.93□□□□□ -0.18
USP40-215ENST00000484528 KRTAP29-1A8MX34 341 aaPredicted RBP13.93□□□□□ -0.18
USP40-215ENST00000484528 REG3AQ06141 175 aa13.93□□□□□ -0.18
USP40-215ENST00000484528 RASL11AQ6T310 242 aa13.93□□□□□ -0.18
USP40-215ENST00000484528 F2Z2F3 143 aa13.92□□□□□ -0.18
USP40-215ENST00000484528 TRGC1P0CF51 173 aa13.92□□□□□ -0.18
USP40-215ENST00000484528 C20orf203Q8NBC4 194 aa13.92□□□□□ -0.18
USP40-215ENST00000484528 TMEM243Q9BU79 118 aa13.92□□□□□ -0.18
USP40-215ENST00000484528 NTF3P20783 257 aa13.91□□□□□ -0.18
USP40-215ENST00000484528 GFRA4Q9GZZ7 299 aa13.91□□□□□ -0.18
USP40-215ENST00000484528 DPH3P1Q9H4G8 78 aa13.91□□□□□ -0.18
USP40-215ENST00000484528 LRP1Q07954 4544 aaKnown RBP13.9□□□□□ -0.18
USP40-215ENST00000484528 IGLV4-60A0A075B6I1 120 aa13.9□□□□□ -0.18
USP40-215ENST00000484528 NUDT10Q8NFP7 164 aa13.9□□□□□ -0.18
USP40-215ENST00000484528 NUDT11Q96G61 164 aa13.9□□□□□ -0.18
USP40-215ENST00000484528 CTRLP40313 264 aa13.89□□□□□ -0.19
USP40-215ENST00000484528 DGAT2L7PQ6IED9 249 aa13.89□□□□□ -0.19
USP40-215ENST00000484528 TCTE3Q8IZS6 198 aa13.89□□□□□ -0.19
USP40-215ENST00000484528 C9orf163Q8N9P6 203 aa13.89□□□□□ -0.19
USP40-215ENST00000484528 NIT2Q9NQR4 276 aa13.89□□□□□ -0.19
USP40-215ENST00000484528 BIN3Q9NQY0 253 aa13.89□□□□□ -0.19
USP40-215ENST00000484528 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.89□□□□□ -0.19
USP40-215ENST00000484528 PANO1I0J062 215 aa13.88□□□□□ -0.19
USP40-215ENST00000484528 SLC51BQ86UW2 128 aa13.88□□□□□ -0.19
USP40-215ENST00000484528 RNASE7Q9H1E1 156 aaKnown RBP13.88□□□□□ -0.19
USP40-215ENST00000484528 RPL37AP61513 92 aaKnown RBP13.87□□□□□ -0.19
USP40-215ENST00000484528 TWIST1Q15672 202 aa13.87□□□□□ -0.19
USP40-215ENST00000484528 C9orf62Q8N4C0 152 aa13.87□□□□□ -0.19
USP40-215ENST00000484528 TRAV26-2A0A0B4J265 109 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms