RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 FAM213BQ8TBF2 198 aa4.56□□□□□ -1.68
HDAC3-207ENST00000475549 RPL36ALQ969Q0 106 aaKnown RBP4.56□□□□□ -1.68
HDAC3-207ENST00000475549 CHAC1Q9BUX1 264 aa4.56□□□□□ -1.68
HDAC3-207ENST00000475549 URGCP-MRPS24S4R325 110 aa4.56□□□□□ -1.68
HDAC3-207ENST00000475549 A0A087WX48 190 aa4.55□□□□□ -1.68
HDAC3-207ENST00000475549 TMEM262E9PQX1 116 aa4.55□□□□□ -1.68
HDAC3-207ENST00000475549 PLA2G1BP04054 148 aaKnown RBP4.55□□□□□ -1.68
HDAC3-207ENST00000475549 OR5AL1P0C617 328 aa4.55□□□□□ -1.68
HDAC3-207ENST00000475549 KRTAP26-1Q6PEX3 210 aa4.55□□□□□ -1.68
HDAC3-207ENST00000475549 C15orf54Q8N8G6 183 aa4.55□□□□□ -1.68
HDAC3-207ENST00000475549 STOML3Q8TAV4 291 aa4.55□□□□□ -1.68
HDAC3-207ENST00000475549 RMI2Q96E14 147 aa4.55□□□□□ -1.68
HDAC3-207ENST00000475549 CHCHD7Q9BUK0 85 aa4.55□□□□□ -1.68
HDAC3-207ENST00000475549 DERL1Q9BUN8 251 aa4.55□□□□□ -1.68
HDAC3-207ENST00000475549 ZNF471Q9BX82 626 aaPredicted RBP4.55□□□□□ -1.68
HDAC3-207ENST00000475549 HMCN2Q8NDA2 5059 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 HMSDA8MTL9 139 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 UMAD1C9J7I0 102 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 M0QY20 66 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 IGLV2-8P01709 118 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 S100A9P06702 114 aaKnown RBP4.54□□□□□ -1.68
HDAC3-207ENST00000475549 PRSS1P07477 247 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 CXCL1P09341 107 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 H2AFB1P0C5Y9 115 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 GZMBP10144 247 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 RPL35P42766 123 aaKnown RBP4.54□□□□□ -1.68
HDAC3-207ENST00000475549 Q0VG73 95 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 ELOBQ15370 118 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 ZNF56Q15929 161 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 PRR34Q9NV39 138 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 VAX2Q9UIW0 290 aa4.54□□□□□ -1.68
HDAC3-207ENST00000475549 F5H697 171 aa4.53□□□□□ -1.68
HDAC3-207ENST00000475549 PANO1I0J062 215 aa4.53□□□□□ -1.68
HDAC3-207ENST00000475549 BCL2L11O43521 198 aa4.53□□□□□ -1.68
HDAC3-207ENST00000475549 RBX1P62877 108 aa4.53□□□□□ -1.68
HDAC3-207ENST00000475549 LINC00269Q8N2A0 174 aa4.53□□□□□ -1.68
HDAC3-207ENST00000475549 DEFB104AQ8WTQ1 72 aa4.53□□□□□ -1.68
HDAC3-207ENST00000475549 CHCHD5Q9BSY4 110 aa4.53□□□□□ -1.68
HDAC3-207ENST00000475549 TRBV20OR9-2A0A075B6H5 130 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 TRAV1-1A0A0B4J248 108 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 A0A0D9SG52 128 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 RAB19A4D1S5 217 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 C19orf71A6NCJ1 209 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 USP17L23D6RBM5 183 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 ANGP03950 147 aaKnown RBP4.52□□□□□ -1.69
HDAC3-207ENST00000475549 SLPIP03973 132 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 IGLC6P0CF74 106 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 HNRNPA3P51991 378 aaKnown RBP4.52□□□□□ -1.69
HDAC3-207ENST00000475549 GAGE6Q13070 117 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 SPANXN1Q5VSR9 72 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 C11orf52Q96A22 123 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 DAZAP1Q96EP5 407 aaKnown RBP4.52□□□□□ -1.69
HDAC3-207ENST00000475549 C1orf43Q9BWL3 253 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 GFRA4Q9GZZ7 299 aa4.52□□□□□ -1.69
HDAC3-207ENST00000475549 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.52□□□□□ -1.69
HDAC3-207ENST00000475549 KANTRA0A1W2PQU2 76 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 PFDN1O60925 122 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 HLA-DQA1P01909 254 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 MIAQ16674 131 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 IQCJQ1A5X6 159 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 CENPWQ5EE01 88 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 SUMO4Q6EEV6 95 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 KCNIP4Q6PIL6 250 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 CLPSL2Q6UWE3 100 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 SDIM1Q6ZPB5 146 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 GNG13Q9P2W3 67 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 UBR4Q5T4S7 5183 aa4.51□□□□□ -1.69
HDAC3-207ENST00000475549 FAT3Q8TDW7 4589 aa4.5□□□□□ -1.69
HDAC3-207ENST00000475549 IGLV4-60A0A075B6I1 120 aa4.5□□□□□ -1.69
HDAC3-207ENST00000475549 IGLV10-54A0A075B6I4 117 aa4.5□□□□□ -1.69
HDAC3-207ENST00000475549 CRPP02741 224 aa4.5□□□□□ -1.69
HDAC3-207ENST00000475549 DGAT2L7PQ6IED9 249 aa4.5□□□□□ -1.69
HDAC3-207ENST00000475549 C9orf163Q8N9P6 203 aa4.5□□□□□ -1.69
HDAC3-207ENST00000475549 FER1L6-AS1Q8NA97 138 aa4.5□□□□□ -1.69
HDAC3-207ENST00000475549 C20orf203Q8NBC4 194 aa4.5□□□□□ -1.69
HDAC3-207ENST00000475549 OR2D3Q8NGH3 330 aa4.5□□□□□ -1.69
HDAC3-207ENST00000475549 TPPP3Q9BW30 176 aa4.5□□□□□ -1.69
HDAC3-207ENST00000475549 TRBV25-1A0A075B6N4 114 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 LOC100996750A0A140TA64 210 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 SMIM17P0DL12 118 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 NTF3P20783 257 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 RAB5CP51148 216 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 NKX2-5P52952 324 aaPredicted RBP4.49□□□□□ -1.69
HDAC3-207ENST00000475549 REG3AQ06141 175 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 C14orf177Q52M58 125 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 LYZL1Q6UWQ5 148 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 C9orf62Q8N4C0 152 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 AP1S3Q96PC3 154 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 KRTAP4-6Q9BYQ5 205 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 MANBALQ9NQG1 85 aa4.49□□□□□ -1.69
HDAC3-207ENST00000475549 IGHV1-24A0A0C4DH33 117 aa4.48□□□□□ -1.69
HDAC3-207ENST00000475549 A0A1B0GUV1 79 aa4.48□□□□□ -1.69
HDAC3-207ENST00000475549 OXTP01178 125 aa4.48□□□□□ -1.69
HDAC3-207ENST00000475549 MGPP08493 103 aa4.48□□□□□ -1.69
HDAC3-207ENST00000475549 SULT1A2P50226 295 aa4.48□□□□□ -1.69
HDAC3-207ENST00000475549 FOXA3P55318 350 aaPredicted RBP4.48□□□□□ -1.69
HDAC3-207ENST00000475549 EIF5AP63241 154 aaKnown RBP4.48□□□□□ -1.69
HDAC3-207ENST00000475549 MEF2BQ02080 365 aaPredicted RBP4.48□□□□□ -1.69
HDAC3-207ENST00000475549 TMEM97Q5BJF2 176 aa4.48□□□□□ -1.69
HDAC3-207ENST00000475549 NUDT10Q8NFP7 164 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms