RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MYCBP2O75592 4640 aa12.18□□□□□ -0.46
COL7A1-209ENST00000474432 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.18□□□□□ -0.46
COL7A1-209ENST00000474432 IGKV2D-24A0A075B6R9 120 aa12.18□□□□□ -0.46
COL7A1-209ENST00000474432 A0A087WX48 190 aa12.18□□□□□ -0.46
COL7A1-209ENST00000474432 ENHOQ6UWT2 76 aa12.18□□□□□ -0.46
COL7A1-209ENST00000474432 VAX2Q9UIW0 290 aa12.18□□□□□ -0.46
COL7A1-209ENST00000474432 MEF2BQ02080 365 aaPredicted RBP12.17□□□□□ -0.46
COL7A1-209ENST00000474432 LINC01620Q4KN68 170 aa12.17□□□□□ -0.46
COL7A1-209ENST00000474432 MPV17L2Q567V2 206 aa12.17□□□□□ -0.46
COL7A1-209ENST00000474432 EIF5AL1Q6IS14 154 aaKnown RBP12.17□□□□□ -0.46
COL7A1-209ENST00000474432 RMI2Q96E14 147 aa12.17□□□□□ -0.46
COL7A1-209ENST00000474432 DMBT1Q9UGM3 2413 aaPredicted RBP12.17□□□□□ -0.46
COL7A1-209ENST00000474432 OR2D3Q8NGH3 330 aa12.16□□□□□ -0.46
COL7A1-209ENST00000474432 F5H697 171 aa12.15□□□□□ -0.46
COL7A1-209ENST00000474432 ELOBQ15370 118 aa12.15□□□□□ -0.46
COL7A1-209ENST00000474432 Q6ZNX1 250 aa12.15□□□□□ -0.46
COL7A1-209ENST00000474432 FER1L6-AS1Q8NA97 138 aa12.15□□□□□ -0.46
COL7A1-209ENST00000474432 SMIM12Q96EX1 92 aa12.15□□□□□ -0.46
COL7A1-209ENST00000474432 AP1S3Q96PC3 154 aa12.15□□□□□ -0.46
COL7A1-209ENST00000474432 TMEM262E9PQX1 116 aa12.14□□□□□ -0.47
COL7A1-209ENST00000474432 M0QY20 66 aa12.14□□□□□ -0.47
COL7A1-209ENST00000474432 BCL2P10415 239 aa12.14□□□□□ -0.47
COL7A1-209ENST00000474432 GNG4P50150 75 aa12.14□□□□□ -0.47
COL7A1-209ENST00000474432 SLC51BQ86UW2 128 aa12.14□□□□□ -0.47
COL7A1-209ENST00000474432 Q8N976 141 aa12.14□□□□□ -0.47
COL7A1-209ENST00000474432 FAM229AH3BQW9 127 aa12.13□□□□□ -0.47
COL7A1-209ENST00000474432 TEX46H3BTG2 121 aa12.13□□□□□ -0.47
COL7A1-209ENST00000474432 PDE6DO43924 150 aa12.13□□□□□ -0.47
COL7A1-209ENST00000474432 RPS20P60866 119 aaKnown RBP12.13□□□□□ -0.47
COL7A1-209ENST00000474432 Q0VG73 95 aa12.13□□□□□ -0.47
COL7A1-209ENST00000474432 C15orf54Q8N8G6 183 aa12.13□□□□□ -0.47
COL7A1-209ENST00000474432 MED9Q9NWA0 146 aa12.13□□□□□ -0.47
COL7A1-209ENST00000474432 SUMO4Q6EEV6 95 aa12.12□□□□□ -0.47
COL7A1-209ENST00000474432 DAZAP1Q96EP5 407 aaKnown RBP12.12□□□□□ -0.47
COL7A1-209ENST00000474432 CHCHD5Q9BSY4 110 aa12.12□□□□□ -0.47
COL7A1-209ENST00000474432 TPPP3Q9BW30 176 aa12.12□□□□□ -0.47
COL7A1-209ENST00000474432 SMIM17P0DL12 118 aa12.11□□□□□ -0.47
COL7A1-209ENST00000474432 KRTAP26-1Q6PEX3 210 aa12.11□□□□□ -0.47
COL7A1-209ENST00000474432 PRR34Q9NV39 138 aa12.11□□□□□ -0.47
COL7A1-209ENST00000474432 IFNA1P01562 189 aa12.1□□□□□ -0.47
COL7A1-209ENST00000474432 P01737 135 aa12.1□□□□□ -0.47
COL7A1-209ENST00000474432 RBX1P62877 108 aa12.1□□□□□ -0.47
COL7A1-209ENST00000474432 CACNG7P62955 275 aa12.1□□□□□ -0.47
COL7A1-209ENST00000474432 KCNIP4Q6PIL6 250 aa12.1□□□□□ -0.47
COL7A1-209ENST00000474432 LYZL1Q6UWQ5 148 aa12.1□□□□□ -0.47
COL7A1-209ENST00000474432 C9orf62Q8N4C0 152 aa12.1□□□□□ -0.47
COL7A1-209ENST00000474432 NUDT10Q8NFP7 164 aa12.1□□□□□ -0.47
COL7A1-209ENST00000474432 NUDT11Q96G61 164 aa12.1□□□□□ -0.47
COL7A1-209ENST00000474432 F2Z2F3 143 aa12.09□□□□□ -0.47
COL7A1-209ENST00000474432 ANGP03950 147 aaKnown RBP12.09□□□□□ -0.47
COL7A1-209ENST00000474432 MGPP08493 103 aa12.09□□□□□ -0.47
COL7A1-209ENST00000474432 IQCJQ1A5X6 159 aa12.09□□□□□ -0.47
COL7A1-209ENST00000474432 TMEM97Q5BJF2 176 aa12.09□□□□□ -0.47
COL7A1-209ENST00000474432 C1orf43Q9BWL3 253 aa12.09□□□□□ -0.47
COL7A1-209ENST00000474432 K7EN84 100 aa12.08□□□□□ -0.48
COL7A1-209ENST00000474432 CTRLP40313 264 aa12.08□□□□□ -0.48
COL7A1-209ENST00000474432 GAGE6Q13070 117 aa12.08□□□□□ -0.48
COL7A1-209ENST00000474432 SCXQ7RTU7 201 aa12.08□□□□□ -0.48
COL7A1-209ENST00000474432 NTF3P20783 257 aa12.07□□□□□ -0.48
COL7A1-209ENST00000474432 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.07□□□□□ -0.48
COL7A1-209ENST00000474432 OCC1Q8TAD7 63 aa12.07□□□□□ -0.48
COL7A1-209ENST00000474432 CNFNQ9BYD5 112 aa12.07□□□□□ -0.48
COL7A1-209ENST00000474432 TRBV25-1A0A075B6N4 114 aa12.06□□□□□ -0.48
COL7A1-209ENST00000474432 XKRY2A2RUG3 117 aa12.06□□□□□ -0.48
COL7A1-209ENST00000474432 CRPP02741 224 aa12.06□□□□□ -0.48
COL7A1-209ENST00000474432 NKX2-5P52952 324 aaPredicted RBP12.06□□□□□ -0.48
COL7A1-209ENST00000474432 PKIAP61925 76 aa12.06□□□□□ -0.48
COL7A1-209ENST00000474432 MIAQ16674 131 aa12.06□□□□□ -0.48
COL7A1-209ENST00000474432 WDR73Q6P4I2 378 aa12.06□□□□□ -0.48
COL7A1-209ENST00000474432 RASL11AQ6T310 242 aa12.06□□□□□ -0.48
COL7A1-209ENST00000474432 LINC00528Q8N1L1 170 aa12.06□□□□□ -0.48
COL7A1-209ENST00000474432 RNASE7Q9H1E1 156 aaKnown RBP12.06□□□□□ -0.48
COL7A1-209ENST00000474432 BIN3Q9NQY0 253 aa12.06□□□□□ -0.48
COL7A1-209ENST00000474432 USP17L23D6RBM5 183 aa12.05□□□□□ -0.48
COL7A1-209ENST00000474432 H7C1H1 209 aa12.05□□□□□ -0.48
COL7A1-209ENST00000474432 TAGLN2P37802 199 aaKnown RBP12.05□□□□□ -0.48
COL7A1-209ENST00000474432 CLPSL2Q6UWE3 100 aa12.05□□□□□ -0.48
COL7A1-209ENST00000474432 LINC00269Q8N2A0 174 aa12.05□□□□□ -0.48
COL7A1-209ENST00000474432 CHAC1Q9BUX1 264 aa12.05□□□□□ -0.48
COL7A1-209ENST00000474432 DPH3P1Q9H4G8 78 aa12.05□□□□□ -0.48
COL7A1-209ENST00000474432 IGHV1-24A0A0C4DH33 117 aa12.04□□□□□ -0.48
COL7A1-209ENST00000474432 TRGC1P0CF51 173 aa12.04□□□□□ -0.48
COL7A1-209ENST00000474432 KRTAP10-4P60372 401 aaPredicted RBP12.04□□□□□ -0.48
COL7A1-209ENST00000474432 C20orf203Q8NBC4 194 aa12.04□□□□□ -0.48
COL7A1-209ENST00000474432 LYPD6BQ8NI32 183 aa12.04□□□□□ -0.48
COL7A1-209ENST00000474432 NIT2Q9NQR4 276 aa12.04□□□□□ -0.48
COL7A1-209ENST00000474432 PRSS1P07477 247 aa12.03□□□□□ -0.48
COL7A1-209ENST00000474432 CIRBP-AS1Q8TBR5 109 aa12.03□□□□□ -0.48
COL7A1-209ENST00000474432 DEFB104AQ8WTQ1 72 aa12.03□□□□□ -0.48
COL7A1-209ENST00000474432 GTSF1Q8WW33 167 aa12.03□□□□□ -0.48
COL7A1-209ENST00000474432 GFRA4Q9GZZ7 299 aa12.03□□□□□ -0.48
COL7A1-209ENST00000474432 RPP21Q9H633 154 aaKnown RBP12.03□□□□□ -0.48
COL7A1-209ENST00000474432 IGLV4-60A0A075B6I1 120 aa12.02□□□□□ -0.49
COL7A1-209ENST00000474432 HLA-DQA1P01909 254 aa12.02□□□□□ -0.49
COL7A1-209ENST00000474432 C14orf177Q52M58 125 aa12.02□□□□□ -0.49
COL7A1-209ENST00000474432 ALKAL2Q6UX46 152 aa12.02□□□□□ -0.49
COL7A1-209ENST00000474432 AKAP14Q86UN6 197 aa12.02□□□□□ -0.49
COL7A1-209ENST00000474432 PGLYRP4Q96LB8 373 aa12.02□□□□□ -0.49
COL7A1-209ENST00000474432 GATD1Q8NB37 220 aa12.01□□□□□ -0.49
COL7A1-209ENST00000474432 hCG_2014768A0A024R1R8 64 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms