RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	HIGD2B	Q4VC39	106 aa		3.18	□□□□□ -1.9
PTPN4-209	ENST00000469511	C20orf203	Q8NBC4	194 aa		3.18	□□□□□ -1.9
PTPN4-209	ENST00000469511	LINC00526	Q96FQ7	95 aa		3.18	□□□□□ -1.9
PTPN4-209	ENST00000469511	CHCHD5	Q9BSY4	110 aa		3.18	□□□□□ -1.9
PTPN4-209	ENST00000469511	SLIRP	Q9GZT3	109 aa	Known RBP	3.18	□□□□□ -1.9
PTPN4-209	ENST00000469511	SH3BGRL3	Q9H299	93 aa		3.18	□□□□□ -1.9
PTPN4-209	ENST00000469511	MBD2	Q9UBB5	411 aa		3.18	□□□□□ -1.9
PTPN4-209	ENST00000469511	RSL24D1	Q9UHA3	163 aa	Known RBP	3.18	□□□□□ -1.9
PTPN4-209	ENST00000469511	IGLV4-60	A0A075B6I1	120 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	TRBV7-3	A0A075B6L6	115 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511		A0A1W2PNN7	141 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	FAM231B	A6NCW3	169 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	FAM25E	A8MYX2	175 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511		H3BVH4	76 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	TAAR5	O14804	337 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	NDUFS6	O75380	124 aa	Known RBP	3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	NDUFB6	O95139	128 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	ARMS2	P0C7Q2	107 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	S100A11	P31949	105 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	BTC	P35070	178 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	RPL24	P83731	157 aa	Known RBP	3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	REG3A	Q06141	175 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	IL15RA	Q13261	267 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	PYDC2	Q56P42	97 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	KCNIP4	Q6PIL6	250 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	VCX3A	Q9NNX9	186 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	OTOR	Q9NRC9	128 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	LYRM2	Q9NU23	88 aa	Predicted RBP	3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	PSG8	Q9UQ74	426 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511		V9GYH0	126 aa		3.17	□□□□□ -1.9
PTPN4-209	ENST00000469511	IGKV2D-30	A0A075B6S6	120 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	TRAV26-2	A0A0B4J265	109 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511		A0A1B0GUV1	79 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	FAU	P35544	74 aa	Known RBP	3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	CRIP1	P50238	77 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	DEFA3	P59666	94 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	S100A10	P60903	97 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	RPL36A	P83881	106 aa	Known RBP	3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511		Q6ZRP5	223 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	PRNT	Q86SH4	94 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	KRTAP11-1	Q8IUC1	163 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	OR5C1	Q8NGR4	320 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	CMTM2	Q8TAZ6	248 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	MITD1	Q8WV92	249 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	SFRP2	Q96HF1	295 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	RABL2A	Q9UBK7	228 aa	Predicted RBP	3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	PSORS1C2	Q9UIG4	136 aa		3.16	□□□□□ -1.9
PTPN4-209	ENST00000469511	TRAV34	A0A0B4J273	112 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511		M0R036	132 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511		M0R381	172 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	TSPAN13	O95857	204 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	TCRA	P04437	139 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	KRTAP1-4	P0C5Y4	121 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	S100A4	P26447	101 aa	Known RBP	3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	RPS10	P46783	165 aa	Known RBP	3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	CACNG7	P62955	275 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	ATP6V1F	Q16864	119 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	PRR27	Q6MZM9	219 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	ZNF664	Q8N3J9	261 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	OR10G8	Q8NGN5	311 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	SEC22C	Q9BRL7	303 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	WDR61	Q9GZS3	305 aa	Known RBP	3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	IL36B	Q9NZH7	164 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	OR5AC2	Q9NZP5	309 aa		3.15	□□□□□ -1.91
PTPN4-209	ENST00000469511	TMSB15B	A0A087X1C1	80 aa		3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	TRBV10-1	A0A0K0K1A3	114 aa		3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	MUC21	A0A140T8X8	626 aa		3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	KRBOX1	C9JBD0	128 aa		3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511		H3BMQ9	156 aa		3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	IFNA7	P01567	189 aa		3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	FLI1	Q01543	452 aa	Predicted RBP	3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	SMUG1	Q53HV7	270 aa		3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	PHF5A	Q7RTV0	110 aa	Known RBP	3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	SUN5	Q8TC36	379 aa		3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	SDHC	Q99643	169 aa	Predicted RBP	3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	ZNF471	Q9BX82	626 aa	Predicted RBP	3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	KRTAP4-1	Q9BYQ7	146 aa		3.14	□□□□□ -1.91
PTPN4-209	ENST00000469511	IGLV5-45	A0A087WSX0	123 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	IGKV3OR2-268	A0A0C4DH90	116 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	TRBV6-1	A0A0K0K1D8	114 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511		B4DEV8	164 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	SIX6	O95475	246 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	AP3S2	P59780	193 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	RAB2A	P61019	212 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	HBG1	P69891	147 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	HBG2	P69892	147 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	KHDC3L	Q587J8	217 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	C1orf137	Q5JT78	98 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	STX12	Q86Y82	276 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	OR11H4	Q8NGC9	324 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	DERL1	Q9BUN8	251 aa		3.13	□□□□□ -1.91
PTPN4-209	ENST00000469511	TRAV8-4	A0A0B4J246	113 aa		3.12	□□□□□ -1.91
PTPN4-209	ENST00000469511	FABP5P3	A8MUU1	101 aa		3.12	□□□□□ -1.91
PTPN4-209	ENST00000469511	SH2D1A	O60880	128 aa		3.12	□□□□□ -1.91
PTPN4-209	ENST00000469511		P01737	135 aa		3.12	□□□□□ -1.91
PTPN4-209	ENST00000469511	PVALB	P20472	110 aa	Predicted RBP	3.12	□□□□□ -1.91
PTPN4-209	ENST00000469511	SST	P61278	116 aa		3.12	□□□□□ -1.91
PTPN4-209	ENST00000469511	ZNF56	Q15929	161 aa		3.12	□□□□□ -1.91
PTPN4-209	ENST00000469511	IQCJ	Q1A5X6	159 aa		3.12	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms