RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 HLA-DQA1P01909 254 aa11.56□□□□□ -0.56
COL7A1-206ENST00000466591 OR5AL1P0C617 328 aa11.56□□□□□ -0.56
COL7A1-206ENST00000466591 LINC01620Q4KN68 170 aa11.56□□□□□ -0.56
COL7A1-206ENST00000466591 DNAJC30Q96LL9 226 aa11.56□□□□□ -0.56
COL7A1-206ENST00000466591 SNAI2O43623 268 aa11.55□□□□□ -0.56
COL7A1-206ENST00000466591 IFNA1P01562 189 aa11.55□□□□□ -0.56
COL7A1-206ENST00000466591 CENPWQ5EE01 88 aa11.55□□□□□ -0.56
COL7A1-206ENST00000466591 LINC00528Q8N1L1 170 aa11.55□□□□□ -0.56
COL7A1-206ENST00000466591 XKRY2A2RUG3 117 aa11.54□□□□□ -0.56
COL7A1-206ENST00000466591 H7C1H1 209 aa11.54□□□□□ -0.56
COL7A1-206ENST00000466591 GNG4P50150 75 aa11.54□□□□□ -0.56
COL7A1-206ENST00000466591 RAB5CP51148 216 aa11.54□□□□□ -0.56
COL7A1-206ENST00000466591 RPS20P60866 119 aaKnown RBP11.54□□□□□ -0.56
COL7A1-206ENST00000466591 OR2D3Q8NGH3 330 aa11.54□□□□□ -0.56
COL7A1-206ENST00000466591 DERL1Q9BUN8 251 aa11.54□□□□□ -0.56
COL7A1-206ENST00000466591 MLST8Q9BVC4 326 aa11.54□□□□□ -0.56
COL7A1-206ENST00000466591 TRBV25-1A0A075B6N4 114 aa11.53□□□□□ -0.56
COL7A1-206ENST00000466591 MPV17L2Q567V2 206 aa11.53□□□□□ -0.56
COL7A1-206ENST00000466591 FER1L6-AS1Q8NA97 138 aa11.53□□□□□ -0.56
COL7A1-206ENST00000466591 GAGE6Q13070 117 aa11.52□□□□□ -0.57
COL7A1-206ENST00000466591 SSBP4Q9BWG4 385 aaPredicted RBP11.52□□□□□ -0.57
COL7A1-206ENST00000466591 FAT1Q14517 4588 aa11.51□□□□□ -0.57
COL7A1-206ENST00000466591 P01737 135 aa11.51□□□□□ -0.57
COL7A1-206ENST00000466591 CACNG7P62955 275 aa11.51□□□□□ -0.57
COL7A1-206ENST00000466591 MIAQ16674 131 aa11.51□□□□□ -0.57
COL7A1-206ENST00000466591 CLPSL2Q6UWE3 100 aa11.51□□□□□ -0.57
COL7A1-206ENST00000466591 BIN3Q9NQY0 253 aa11.51□□□□□ -0.57
COL7A1-206ENST00000466591 PDE6DO43924 150 aa11.5□□□□□ -0.57
COL7A1-206ENST00000466591 GZMBP10144 247 aa11.5□□□□□ -0.57
COL7A1-206ENST00000466591 ATRAIDQ6UW56 229 aa11.5□□□□□ -0.57
COL7A1-206ENST00000466591 SCXQ7RTU7 201 aa11.5□□□□□ -0.57
COL7A1-206ENST00000466591 C11orf52Q96A22 123 aa11.5□□□□□ -0.57
COL7A1-206ENST00000466591 MED9Q9NWA0 146 aa11.5□□□□□ -0.57
COL7A1-206ENST00000466591 IGHV1-24A0A0C4DH33 117 aa11.49□□□□□ -0.57
COL7A1-206ENST00000466591 TRGC1P0CF51 173 aa11.49□□□□□ -0.57
COL7A1-206ENST00000466591 CCL20P78556 96 aa11.49□□□□□ -0.57
COL7A1-206ENST00000466591 MEF2BQ02080 365 aaPredicted RBP11.49□□□□□ -0.57
COL7A1-206ENST00000466591 ENHOQ6UWT2 76 aa11.49□□□□□ -0.57
COL7A1-206ENST00000466591 Q6ZSA8 131 aa11.49□□□□□ -0.57
COL7A1-206ENST00000466591 DEFB104AQ8WTQ1 72 aa11.48□□□□□ -0.57
COL7A1-206ENST00000466591 SMIM12Q96EX1 92 aa11.48□□□□□ -0.57
COL7A1-206ENST00000466591 TRAV1-1A0A0B4J248 108 aa11.47□□□□□ -0.57
COL7A1-206ENST00000466591 RAB19A4D1S5 217 aa11.47□□□□□ -0.57
COL7A1-206ENST00000466591 USP17L23D6RBM5 183 aa11.47□□□□□ -0.57
COL7A1-206ENST00000466591 F2Z2F3 143 aa11.47□□□□□ -0.57
COL7A1-206ENST00000466591 UBE2L6O14933 153 aa11.47□□□□□ -0.57
COL7A1-206ENST00000466591 RBX1P62877 108 aa11.47□□□□□ -0.57
COL7A1-206ENST00000466591 LINC00269Q8N2A0 174 aa11.47□□□□□ -0.57
COL7A1-206ENST00000466591 CHAC1Q9BUX1 264 aa11.47□□□□□ -0.57
COL7A1-206ENST00000466591 DMBT1Q9UGM3 2413 aaPredicted RBP11.47□□□□□ -0.57
COL7A1-206ENST00000466591 NKX2-5P52952 324 aaPredicted RBP11.46□□□□□ -0.57
COL7A1-206ENST00000466591 SUMO4Q6EEV6 95 aa11.46□□□□□ -0.57
COL7A1-206ENST00000466591 VAX2Q9UIW0 290 aa11.46□□□□□ -0.57
COL7A1-206ENST00000466591 SULT1A2P50226 295 aa11.45□□□□□ -0.58
COL7A1-206ENST00000466591 RASL11AQ6T310 242 aa11.45□□□□□ -0.58
COL7A1-206ENST00000466591 IGLC6P0CF74 106 aa11.44□□□□□ -0.58
COL7A1-206ENST00000466591 BCL2P10415 239 aa11.44□□□□□ -0.58
COL7A1-206ENST00000466591 NTM-AS1Q6ZSK4 140 aa11.44□□□□□ -0.58
COL7A1-206ENST00000466591 SMIM15Q7Z3B0 74 aa11.44□□□□□ -0.58
COL7A1-206ENST00000466591 TMEM243Q9BU79 118 aa11.44□□□□□ -0.58
COL7A1-206ENST00000466591 DPH3P1Q9H4G8 78 aa11.44□□□□□ -0.58
COL7A1-206ENST00000466591 KIF25-AS1Q9Y6Z4 181 aa11.44□□□□□ -0.58
COL7A1-206ENST00000466591 IGLV10-54A0A075B6I4 117 aa11.43□□□□□ -0.58
COL7A1-206ENST00000466591 M0QY20 66 aa11.43□□□□□ -0.58
COL7A1-206ENST00000466591 TAGLN2P37802 199 aaKnown RBP11.43□□□□□ -0.58
COL7A1-206ENST00000466591 REG3AQ06141 175 aa11.43□□□□□ -0.58
COL7A1-206ENST00000466591 TWIST1Q15672 202 aa11.43□□□□□ -0.58
COL7A1-206ENST00000466591 IQCJQ1A5X6 159 aa11.43□□□□□ -0.58
COL7A1-206ENST00000466591 LYZL1Q6UWQ5 148 aa11.43□□□□□ -0.58
COL7A1-206ENST00000466591 C19orf71A6NCJ1 209 aa11.42□□□□□ -0.58
COL7A1-206ENST00000466591 WDR73Q6P4I2 378 aa11.42□□□□□ -0.58
COL7A1-206ENST00000466591 SLC51BQ86UW2 128 aa11.42□□□□□ -0.58
COL7A1-206ENST00000466591 CIRBP-AS1Q8TBR5 109 aa11.42□□□□□ -0.58
COL7A1-206ENST00000466591 IGLV2-8P01709 118 aa11.41□□□□□ -0.58
COL7A1-206ENST00000466591 NTF3P20783 257 aa11.41□□□□□ -0.58
COL7A1-206ENST00000466591 AMTP48728 403 aa11.41□□□□□ -0.58
COL7A1-206ENST00000466591 COTL1Q14019 142 aa11.41□□□□□ -0.58
COL7A1-206ENST00000466591 DGAT2L7PQ6IED9 249 aa11.41□□□□□ -0.58
COL7A1-206ENST00000466591 NIT2Q9NQR4 276 aa11.41□□□□□ -0.58
COL7A1-206ENST00000466591 AP5S1Q9NUS5 200 aa11.41□□□□□ -0.58
COL7A1-206ENST00000466591 FLG2Q5D862 2391 aaPredicted RBP11.41□□□□□ -0.58
COL7A1-206ENST00000466591 VPS13BQ7Z7G8 4022 aa11.41□□□□□ -0.58
COL7A1-206ENST00000466591 DPH3Q96FX2 82 aa11.4□□□□□ -0.58
COL7A1-206ENST00000466591 PRR34Q9NV39 138 aa11.4□□□□□ -0.58
COL7A1-206ENST00000466591 SRRM2Q9UQ35 2752 aaKnown RBP11.39□□□□□ -0.59
COL7A1-206ENST00000466591 TRAV8-4A0A0B4J246 113 aa11.39□□□□□ -0.59
COL7A1-206ENST00000466591 hDV102S1A0JD36 115 aa11.39□□□□□ -0.59
COL7A1-206ENST00000466591 PRSS1P07477 247 aa11.39□□□□□ -0.59
COL7A1-206ENST00000466591 TCTE3Q8IZS6 198 aa11.39□□□□□ -0.59
COL7A1-206ENST00000466591 CLRN3Q8NCR9 226 aa11.39□□□□□ -0.59
COL7A1-206ENST00000466591 RPP21Q9H633 154 aaKnown RBP11.39□□□□□ -0.59
COL7A1-206ENST00000466591 AMMECR1LQ6DCA0 310 aa11.38□□□□□ -0.59
COL7A1-206ENST00000466591 NUDT10Q8NFP7 164 aa11.38□□□□□ -0.59
COL7A1-206ENST00000466591 NUDT11Q96G61 164 aa11.38□□□□□ -0.59
COL7A1-206ENST00000466591 DNAH8Q96JB1 4490 aa11.38□□□□□ -0.59
COL7A1-206ENST00000466591 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.37□□□□□ -0.59
COL7A1-206ENST00000466591 IGKV3OR2-268A0A0C4DH90 116 aa11.37□□□□□ -0.59
COL7A1-206ENST00000466591 CEBPGP53567 150 aa11.37□□□□□ -0.59
COL7A1-206ENST00000466591 RPL37AP61513 92 aaKnown RBP11.37□□□□□ -0.59
COL7A1-206ENST00000466591 BORCS7Q96B45 105 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms