RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 DEFB104AQ8WTQ1 72 aa12.5□□□□□ -0.41
COL9A3-206ENST00000466532 KANTRA0A1W2PQU2 76 aa12.49□□□□□ -0.41
COL9A3-206ENST00000466532 ANGP03950 147 aaKnown RBP12.49□□□□□ -0.41
COL9A3-206ENST00000466532 H2AFB1P0C5Y9 115 aa12.49□□□□□ -0.41
COL9A3-206ENST00000466532 CHCHD5Q9BSY4 110 aa12.49□□□□□ -0.41
COL9A3-206ENST00000466532 BCL2L11O43521 198 aa12.48□□□□□ -0.41
COL9A3-206ENST00000466532 TMUB2Q71RG4 321 aa12.48□□□□□ -0.41
COL9A3-206ENST00000466532 A0A0D9SG52 128 aa12.47□□□□□ -0.41
COL9A3-206ENST00000466532 HMSDA8MTL9 139 aa12.47□□□□□ -0.41
COL9A3-206ENST00000466532 KRTAP29-1A8MX34 341 aaPredicted RBP12.47□□□□□ -0.41
COL9A3-206ENST00000466532 SMIM17P0DL12 118 aa12.47□□□□□ -0.41
COL9A3-206ENST00000466532 PKIAP61925 76 aa12.47□□□□□ -0.41
COL9A3-206ENST00000466532 CIRBP-AS1Q8TBR5 109 aa12.47□□□□□ -0.41
COL9A3-206ENST00000466532 HLA-DQA1P01909 254 aa12.46□□□□□ -0.41
COL9A3-206ENST00000466532 RPL35P42766 123 aaKnown RBP12.46□□□□□ -0.41
COL9A3-206ENST00000466532 TMEM97Q5BJF2 176 aa12.46□□□□□ -0.41
COL9A3-206ENST00000466532 NTM-AS1Q6ZSK4 140 aa12.46□□□□□ -0.41
COL9A3-206ENST00000466532 AP1S3Q96PC3 154 aa12.46□□□□□ -0.41
COL9A3-206ENST00000466532 KIF25-AS1Q9Y6Z4 181 aa12.46□□□□□ -0.41
COL9A3-206ENST00000466532 USP17L23D6RBM5 183 aa12.45□□□□□ -0.42
COL9A3-206ENST00000466532 EIF5AP63241 154 aaKnown RBP12.45□□□□□ -0.42
COL9A3-206ENST00000466532 MIAQ16674 131 aa12.45□□□□□ -0.42
COL9A3-206ENST00000466532 VAX2Q9UIW0 290 aa12.45□□□□□ -0.42
COL9A3-206ENST00000466532 DERL1Q9BUN8 251 aa12.44□□□□□ -0.42
COL9A3-206ENST00000466532 KRTAP10-4P60372 401 aaPredicted RBP12.43□□□□□ -0.42
COL9A3-206ENST00000466532 GAGE6Q13070 117 aa12.43□□□□□ -0.42
COL9A3-206ENST00000466532 CLPSL2Q6UWE3 100 aa12.43□□□□□ -0.42
COL9A3-206ENST00000466532 TPPP3Q9BW30 176 aa12.43□□□□□ -0.42
COL9A3-206ENST00000466532 MANBALQ9NQG1 85 aa12.43□□□□□ -0.42
COL9A3-206ENST00000466532 GNG13Q9P2W3 67 aa12.43□□□□□ -0.42
COL9A3-206ENST00000466532 LRP1Q07954 4544 aaKnown RBP12.43□□□□□ -0.42
COL9A3-206ENST00000466532 TRBV25-1A0A075B6N4 114 aa12.42□□□□□ -0.42
COL9A3-206ENST00000466532 IGLV2-8P01709 118 aa12.42□□□□□ -0.42
COL9A3-206ENST00000466532 GZMBP10144 247 aa12.42□□□□□ -0.42
COL9A3-206ENST00000466532 RBX1P62877 108 aa12.42□□□□□ -0.42
COL9A3-206ENST00000466532 CCL20P78556 96 aa12.42□□□□□ -0.42
COL9A3-206ENST00000466532 C11orf52Q96A22 123 aa12.42□□□□□ -0.42
COL9A3-206ENST00000466532 FAT3Q8TDW7 4589 aa12.42□□□□□ -0.42
COL9A3-206ENST00000466532 MGPP08493 103 aa12.41□□□□□ -0.42
COL9A3-206ENST00000466532 CENPWQ5EE01 88 aa12.41□□□□□ -0.42
COL9A3-206ENST00000466532 LINC00269Q8N2A0 174 aa12.41□□□□□ -0.42
COL9A3-206ENST00000466532 DAZAP1Q96EP5 407 aaKnown RBP12.41□□□□□ -0.42
COL9A3-206ENST00000466532 PRR34Q9NV39 138 aa12.41□□□□□ -0.42
COL9A3-206ENST00000466532 PKHD1L1Q86WI1 4243 aa12.41□□□□□ -0.42
COL9A3-206ENST00000466532 PRSS1P07477 247 aa12.4□□□□□ -0.42
COL9A3-206ENST00000466532 IGLC6P0CF74 106 aa12.4□□□□□ -0.42
COL9A3-206ENST00000466532 FER1L6-AS1Q8NA97 138 aa12.4□□□□□ -0.42
COL9A3-206ENST00000466532 IGHV1-24A0A0C4DH33 117 aa12.39□□□□□ -0.43
COL9A3-206ENST00000466532 H7C1H1 209 aa12.39□□□□□ -0.43
COL9A3-206ENST00000466532 M0QY20 66 aa12.39□□□□□ -0.43
COL9A3-206ENST00000466532 RPS20P60866 119 aaKnown RBP12.39□□□□□ -0.43
COL9A3-206ENST00000466532 IQCJQ1A5X6 159 aa12.39□□□□□ -0.43
COL9A3-206ENST00000466532 OR2D3Q8NGH3 330 aa12.39□□□□□ -0.43
COL9A3-206ENST00000466532 CACNG7P62955 275 aa12.38□□□□□ -0.43
COL9A3-206ENST00000466532 SUMO4Q6EEV6 95 aa12.38□□□□□ -0.43
COL9A3-206ENST00000466532 DGAT2L7PQ6IED9 249 aa12.38□□□□□ -0.43
COL9A3-206ENST00000466532 KRTAP26-1Q6PEX3 210 aa12.38□□□□□ -0.43
COL9A3-206ENST00000466532 TRAV1-1A0A0B4J248 108 aa12.37□□□□□ -0.43
COL9A3-206ENST00000466532 RAB19A4D1S5 217 aa12.37□□□□□ -0.43
COL9A3-206ENST00000466532 C19orf71A6NCJ1 209 aa12.37□□□□□ -0.43
COL9A3-206ENST00000466532 GNG4P50150 75 aa12.37□□□□□ -0.43
COL9A3-206ENST00000466532 TEX46H3BTG2 121 aa12.36□□□□□ -0.43
COL9A3-206ENST00000466532 RAB5CP51148 216 aa12.36□□□□□ -0.43
COL9A3-206ENST00000466532 REG3AQ06141 175 aa12.36□□□□□ -0.43
COL9A3-206ENST00000466532 C9orf163Q8N9P6 203 aa12.36□□□□□ -0.43
COL9A3-206ENST00000466532 IGLV10-54A0A075B6I4 117 aa12.35□□□□□ -0.43
COL9A3-206ENST00000466532 NKX2-5P52952 324 aaPredicted RBP12.35□□□□□ -0.43
COL9A3-206ENST00000466532 SMIM12Q96EX1 92 aa12.35□□□□□ -0.43
COL9A3-206ENST00000466532 XKRY2A2RUG3 117 aa12.34□□□□□ -0.43
COL9A3-206ENST00000466532 P01737 135 aa12.34□□□□□ -0.43
COL9A3-206ENST00000466532 RPL37AP61513 92 aaKnown RBP12.34□□□□□ -0.43
COL9A3-206ENST00000466532 MEF2BQ02080 365 aaPredicted RBP12.34□□□□□ -0.43
COL9A3-206ENST00000466532 EIF5AL1Q6IS14 154 aaKnown RBP12.34□□□□□ -0.43
COL9A3-206ENST00000466532 RASL11AQ6T310 242 aa12.34□□□□□ -0.43
COL9A3-206ENST00000466532 F2Z2F3 143 aa12.33□□□□□ -0.44
COL9A3-206ENST00000466532 PDE6DO43924 150 aa12.33□□□□□ -0.44
COL9A3-206ENST00000466532 OXTP01178 125 aa12.33□□□□□ -0.44
COL9A3-206ENST00000466532 TRGC1P0CF51 173 aa12.33□□□□□ -0.44
COL9A3-206ENST00000466532 C20orf203Q8NBC4 194 aa12.33□□□□□ -0.44
COL9A3-206ENST00000466532 TMEM243Q9BU79 118 aa12.33□□□□□ -0.44
COL9A3-206ENST00000466532 IFNA1P01562 189 aa12.32□□□□□ -0.44
COL9A3-206ENST00000466532 SULT1A2P50226 295 aa12.32□□□□□ -0.44
COL9A3-206ENST00000466532 LYZL1Q6UWQ5 148 aa12.32□□□□□ -0.44
COL9A3-206ENST00000466532 CLRN3Q8NCR9 226 aa12.32□□□□□ -0.44
COL9A3-206ENST00000466532 DPH3P1Q9H4G8 78 aa12.32□□□□□ -0.44
COL9A3-206ENST00000466532 MED9Q9NWA0 146 aa12.32□□□□□ -0.44
COL9A3-206ENST00000466532 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.32□□□□□ -0.44
COL9A3-206ENST00000466532 TRBV20OR9-2A0A075B6H5 130 aa12.31□□□□□ -0.44
COL9A3-206ENST00000466532 IGLV4-60A0A075B6I1 120 aa12.31□□□□□ -0.44
COL9A3-206ENST00000466532 TRAV8-4A0A0B4J246 113 aa12.31□□□□□ -0.44
COL9A3-206ENST00000466532 A0A1B0GUV1 79 aa12.31□□□□□ -0.44
COL9A3-206ENST00000466532 NIT2Q9NQR4 276 aa12.31□□□□□ -0.44
COL9A3-206ENST00000466532 BIN3Q9NQY0 253 aa12.31□□□□□ -0.44
COL9A3-206ENST00000466532 hDV102S1A0JD36 115 aa12.3□□□□□ -0.44
COL9A3-206ENST00000466532 PANO1I0J062 215 aa12.3□□□□□ -0.44
COL9A3-206ENST00000466532 NTF3P20783 257 aa12.3□□□□□ -0.44
COL9A3-206ENST00000466532 SERTAD4-AS1Q5TG53 156 aa12.3□□□□□ -0.44
COL9A3-206ENST00000466532 PGLYRP4Q96LB8 373 aa12.3□□□□□ -0.44
COL9A3-206ENST00000466532 GFRA4Q9GZZ7 299 aa12.3□□□□□ -0.44
COL9A3-206ENST00000466532 UBE2L6O14933 153 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 130.1 ms