RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 STOML3Q8TAV4 291 aa10.45□□□□□ -0.74
COL7A1-204ENST00000462475 PAGE4O60829 102 aa10.44□□□□□ -0.74
COL7A1-204ENST00000462475 IGLV2-8P01709 118 aa10.44□□□□□ -0.74
COL7A1-204ENST00000462475 C14orf177Q52M58 125 aa10.44□□□□□ -0.74
COL7A1-204ENST00000462475 ZNF471Q9BX82 626 aaPredicted RBP10.44□□□□□ -0.74
COL7A1-204ENST00000462475 MUC21A0A0G2JKD1 596 aa10.43□□□□□ -0.74
COL7A1-204ENST00000462475 MUC21A0A140T8X8 626 aa10.43□□□□□ -0.74
COL7A1-204ENST00000462475 USP17L23D6RBM5 183 aa10.43□□□□□ -0.74
COL7A1-204ENST00000462475 HLA-DQA1P01909 254 aa10.43□□□□□ -0.74
COL7A1-204ENST00000462475 ANGP03950 147 aaKnown RBP10.43□□□□□ -0.74
COL7A1-204ENST00000462475 SCO2A0A1W2PP80 73 aa10.42□□□□□ -0.74
COL7A1-204ENST00000462475 SNAI2O43623 268 aa10.42□□□□□ -0.74
COL7A1-204ENST00000462475 CXCL1P09341 107 aa10.42□□□□□ -0.74
COL7A1-204ENST00000462475 EIF5AP63241 154 aaKnown RBP10.42□□□□□ -0.74
COL7A1-204ENST00000462475 NDUFA5Q16718 116 aa10.42□□□□□ -0.74
COL7A1-204ENST00000462475 CHCHD5Q9BSY4 110 aa10.42□□□□□ -0.74
COL7A1-204ENST00000462475 A0A1B0GV50 99 aa10.41□□□□□ -0.74
COL7A1-204ENST00000462475 NTM-AS1Q6ZSK4 140 aa10.41□□□□□ -0.74
COL7A1-204ENST00000462475 MLST8Q9BVC4 326 aa10.41□□□□□ -0.74
COL7A1-204ENST00000462475 UBR4Q5T4S7 5183 aa10.41□□□□□ -0.74
COL7A1-204ENST00000462475 OXTP01178 125 aa10.4□□□□□ -0.74
COL7A1-204ENST00000462475 PRSS1P07477 247 aa10.4□□□□□ -0.74
COL7A1-204ENST00000462475 CLPSL2Q6UWE3 100 aa10.4□□□□□ -0.74
COL7A1-204ENST00000462475 SFT2D1Q8WV19 159 aa10.4□□□□□ -0.74
COL7A1-204ENST00000462475 SSBP4Q9BWG4 385 aaPredicted RBP10.4□□□□□ -0.74
COL7A1-204ENST00000462475 F5H697 171 aa10.39□□□□□ -0.75
COL7A1-204ENST00000462475 S100A9P06702 114 aaKnown RBP10.39□□□□□ -0.75
COL7A1-204ENST00000462475 OR5AL1P0C617 328 aa10.39□□□□□ -0.75
COL7A1-204ENST00000462475 SSTP61278 116 aa10.39□□□□□ -0.75
COL7A1-204ENST00000462475 MIAQ16674 131 aa10.39□□□□□ -0.75
COL7A1-204ENST00000462475 SERTAD4-AS1Q5TG53 156 aa10.39□□□□□ -0.75
COL7A1-204ENST00000462475 SPANXN1Q5VSR9 72 aa10.39□□□□□ -0.75
COL7A1-204ENST00000462475 BAGE2Q86Y30 109 aa10.39□□□□□ -0.75
COL7A1-204ENST00000462475 FAM213BQ8TBF2 198 aa10.39□□□□□ -0.75
COL7A1-204ENST00000462475 HNRNPA3P51991 378 aaKnown RBP10.38□□□□□ -0.75
COL7A1-204ENST00000462475 RAB14P61106 215 aa10.38□□□□□ -0.75
COL7A1-204ENST00000462475 RPL37AP61513 92 aaKnown RBP10.38□□□□□ -0.75
COL7A1-204ENST00000462475 PKIAP61925 76 aa10.38□□□□□ -0.75
COL7A1-204ENST00000462475 RBX1P62877 108 aa10.38□□□□□ -0.75
COL7A1-204ENST00000462475 GAGE6Q13070 117 aa10.38□□□□□ -0.75
COL7A1-204ENST00000462475 KRTAP26-1Q6PEX3 210 aa10.38□□□□□ -0.75
COL7A1-204ENST00000462475 ALKAL2Q6UX46 152 aa10.38□□□□□ -0.75
COL7A1-204ENST00000462475 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.38□□□□□ -0.75
COL7A1-204ENST00000462475 MBD3L1Q8WWY6 194 aa10.38□□□□□ -0.75
COL7A1-204ENST00000462475 PRR34Q9NV39 138 aa10.38□□□□□ -0.75
COL7A1-204ENST00000462475 VAX2Q9UIW0 290 aa10.38□□□□□ -0.75
COL7A1-204ENST00000462475 KIF25-AS1Q9Y6Z4 181 aa10.38□□□□□ -0.75
COL7A1-204ENST00000462475 CLLU1Q5K131 121 aa10.37□□□□□ -0.75
COL7A1-204ENST00000462475 EIF5AL1Q6IS14 154 aaKnown RBP10.37□□□□□ -0.75
COL7A1-204ENST00000462475 DERL1Q9BUN8 251 aa10.37□□□□□ -0.75
COL7A1-204ENST00000462475 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.37□□□□□ -0.75
COL7A1-204ENST00000462475 PANO1I0J062 215 aa10.36□□□□□ -0.75
COL7A1-204ENST00000462475 TMEM97Q5BJF2 176 aa10.36□□□□□ -0.75
COL7A1-204ENST00000462475 LINC00269Q8N2A0 174 aa10.36□□□□□ -0.75
COL7A1-204ENST00000462475 AP1S3Q96PC3 154 aa10.36□□□□□ -0.75
COL7A1-204ENST00000462475 UMAD1C9J7I0 102 aa10.35□□□□□ -0.75
COL7A1-204ENST00000462475 SMIM17P0DL12 118 aa10.35□□□□□ -0.75
COL7A1-204ENST00000462475 DGAT2L7PQ6IED9 249 aa10.35□□□□□ -0.75
COL7A1-204ENST00000462475 C9orf163Q8N9P6 203 aa10.35□□□□□ -0.75
COL7A1-204ENST00000462475 DAZAP1Q96EP5 407 aaKnown RBP10.35□□□□□ -0.75
COL7A1-204ENST00000462475 TRBV25-1A0A075B6N4 114 aa10.34□□□□□ -0.75
COL7A1-204ENST00000462475 RPL35P42766 123 aaKnown RBP10.34□□□□□ -0.75
COL7A1-204ENST00000462475 IGLV10-54A0A075B6I4 117 aa10.33□□□□□ -0.76
COL7A1-204ENST00000462475 LINC00862A6NCI5 91 aa10.33□□□□□ -0.76
COL7A1-204ENST00000462475 MGPP08493 103 aa10.33□□□□□ -0.76
COL7A1-204ENST00000462475 GZMBP10144 247 aa10.33□□□□□ -0.76
COL7A1-204ENST00000462475 IQCJQ1A5X6 159 aa10.33□□□□□ -0.76
COL7A1-204ENST00000462475 IGHV1-24A0A0C4DH33 117 aa10.32□□□□□ -0.76
COL7A1-204ENST00000462475 M0QY20 66 aa10.32□□□□□ -0.76
COL7A1-204ENST00000462475 SDIM1Q6ZPB5 146 aa10.32□□□□□ -0.76
COL7A1-204ENST00000462475 SLC7A5P1Q8MH63 180 aa10.32□□□□□ -0.76
COL7A1-204ENST00000462475 TPPP3Q9BW30 176 aa10.32□□□□□ -0.76
COL7A1-204ENST00000462475 PLA2G2DQ9UNK4 145 aa10.32□□□□□ -0.76
COL7A1-204ENST00000462475 H2AFB1P0C5Y9 115 aa10.31□□□□□ -0.76
COL7A1-204ENST00000462475 IGLC6P0CF74 106 aa10.31□□□□□ -0.76
COL7A1-204ENST00000462475 REG3AQ06141 175 aa10.31□□□□□ -0.76
COL7A1-204ENST00000462475 SUMO4Q6EEV6 95 aa10.31□□□□□ -0.76
COL7A1-204ENST00000462475 C20orf203Q8NBC4 194 aa10.31□□□□□ -0.76
COL7A1-204ENST00000462475 ATP6V1G1O75348 118 aa10.3□□□□□ -0.76
COL7A1-204ENST00000462475 SULT1A2P50226 295 aa10.3□□□□□ -0.76
COL7A1-204ENST00000462475 CENPWQ5EE01 88 aa10.3□□□□□ -0.76
COL7A1-204ENST00000462475 FER1L6-AS1Q8NA97 138 aa10.3□□□□□ -0.76
COL7A1-204ENST00000462475 C11orf52Q96A22 123 aa10.3□□□□□ -0.76
COL7A1-204ENST00000462475 GFRA4Q9GZZ7 299 aa10.3□□□□□ -0.76
COL7A1-204ENST00000462475 IGLV4-60A0A075B6I1 120 aa10.29□□□□□ -0.76
COL7A1-204ENST00000462475 RAB5CP51148 216 aa10.29□□□□□ -0.76
COL7A1-204ENST00000462475 CNBPP62633 177 aaKnown RBP10.29□□□□□ -0.76
COL7A1-204ENST00000462475 CCL20P78556 96 aa10.29□□□□□ -0.76
COL7A1-204ENST00000462475 CLRN3Q8NCR9 226 aa10.29□□□□□ -0.76
COL7A1-204ENST00000462475 OR2D3Q8NGH3 330 aa10.29□□□□□ -0.76
COL7A1-204ENST00000462475 MED9Q9NWA0 146 aa10.29□□□□□ -0.76
COL7A1-204ENST00000462475 GNG13Q9P2W3 67 aa10.29□□□□□ -0.76
COL7A1-204ENST00000462475 hDV102S1A0JD36 115 aa10.28□□□□□ -0.76
COL7A1-204ENST00000462475 H7C1H1 209 aa10.28□□□□□ -0.76
COL7A1-204ENST00000462475 CIRBPQ14011 172 aaKnown RBP10.28□□□□□ -0.76
COL7A1-204ENST00000462475 C19orf71A6NCJ1 209 aa10.27□□□□□ -0.77
COL7A1-204ENST00000462475 BLOC1S1P78537 153 aa10.27□□□□□ -0.77
COL7A1-204ENST00000462475 TMEM243Q9BU79 118 aa10.27□□□□□ -0.77
COL7A1-204ENST00000462475 MANBALQ9NQG1 85 aa10.27□□□□□ -0.77
COL7A1-204ENST00000462475 TRAV8-4A0A0B4J246 113 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms